LOC113530581


Basic Information

Item Value
gene id LOC113530581
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15519342 ~ 15540730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920719.1
TTCACGTAACTGGCATACTGTCAAGAGGCAGAAGCAGCTGCAAGTGCAGCAGCAAGAAGGCAAGAGGGGAGCTACGCCAGGATGACAATTCCAGCGTTCAACTCAGTCCATTTTCCCTAGCAGACTTTCATGTATCCTCCGGACCCGTTTGATGGCTCTGAAGACCTCATGAAAGGATTCCTGCTTCAGAGCCAAATATATTTTGATAGCCTGTTGAACCCCAAGCCTGAAAAGAAGAAGTGGATCATGTTCTTGCTGTCCTGGTTGACCGGCAGGGCCTGCTGGTGGGCGGAGCTTCTGATAACCACGGGAACCATCGGCCTTGGAAGCGTGGCTGAAATCATTAGTCTACTGAGAATGATTTACCGGGAGGGCAACTTTAACTTCAACCTGGAAAATTTTTGGGGGAGGGCTAGCCTGTCGGATGAACCCACTCGGCAGTTCAGTAGCTTTTACGAGGAGAAGTGGGCTGGAAATGAAGAGGCCGACAAGGTGGCCTCACCTGCAGAGCTCCCTCCAGAGTCCGACAGGGCGGTCTCCTCACCTaagctccagccagaggctgATGGGCGGCCTCACGTACCGAGCTCCCTAAAGAGGCTGACGGGGCATCCTCCTAACCCAAGCTCCAGCCTGAGGCCAATGATGCGGCATCCCATATCCTGCTCAAGCCTGAGGCAGACGGGGCGGCCTCCCAATACCTGCTTATGCCTAAGGCCGTCAAGGCGGCCTCCAAAGTCCAGCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920719.1 True 747 mRNA 0.55 2 15519342 15540730

Neighbor

gene id symbol gene type direction distance location
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 113695 15399806 ~ 15405647 (+)
ddx23 ddx23 coding upstream 128179 15364156 ~ 15391163 (+)
soga1 soga1 coding upstream 466951 15008121 ~ 15052391 (+)
lama5 lama5 coding upstream 546351 14899630 ~ 14972991 (+)
mapre1b mapre1b,LOC100304488,LOC108429292,LOC107559863,LOC107666429 coding upstream 642439 14868292 ~ 14876903 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding downstream 354913 15895643 ~ 15943003 (+)
edem2 edem2,LOC107697010 coding downstream 436166 15976896 ~ 16034838 (+)
baz2a baz2a coding downstream 518582 16059312 ~ 16173060 (+)
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding downstream 1048660 16589390 ~ 16620443 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding downstream 1254570 16795300 ~ 16823847 (+)
G255507 NA non-coding upstream 64025 15454955 ~ 15455317 (+)
G255227 LOC108275774 non-coding upstream 261607 15247697 ~ 15257735 (+)
G255229 NA non-coding upstream 280106 15229733 ~ 15239236 (+)
LOC117599280 NA non-coding upstream 342120 15175584 ~ 15177222 (+)
G255218 NA non-coding upstream 423723 15093813 ~ 15095619 (+)
G255645 uckl1 non-coding downstream 71195 15611925 ~ 15623220 (+)
G255649 NA non-coding downstream 112116 15652846 ~ 15657627 (+)
G255650 NA non-coding downstream 117047 15657777 ~ 15658142 (+)
LOC113530859 NA non-coding downstream 282558 15823288 ~ 15825452 (+)
G255780 NA non-coding downstream 340656 15881386 ~ 15881865 (+)
rps21 rps21,LOC107666483 other upstream 351674 15117070 ~ 15167668 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 845390 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 1447126 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 2549333 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 2664962 12837051 ~ 12854380 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 669360 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 691283 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 822816 16363546 ~ 16396245 (+)
G256046 NA other downstream 967295 16508025 ~ 16508380 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 1530406 17071136 ~ 17124951 (+)

Expression


Co-expression Network