eef1a2 (eef1a2,LOC108276238,LOC107724190,LOC107705720,LOC108429306,LOC107696983,LOC107551525,LOC107693560)


Basic Information

Item Value
gene id eef1a2
gene name eef1a2,LOC108276238,LOC107724190,LOC107705720,LOC108429306,LOC107696983,LOC107551525,LOC107693560
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14035800 ~ 14042467 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920723.2
GATGGTCTCAACAGTGCATACCTGGCCCACTTAGGAAAAAAGTGATTCATCAGGTTTTAAAACTGAAGAAATTTGGGTCAACATGCTGAGTCACtgaggtttgtgtgtggtgtttttctctctcttctctatcTGCCTACTTTGTCCTGCTGCCTTTGCAGTTCTCTAgcttcagtctctctctctctctctctctctctctctcaccctctctcacCCTCCCTTACCCTCCCTCTGTCAACCGCCCTCTTCACTTAAAGTGCTGCATTGCGTTCCCTGGGCAGACACAGTTGGAGCGTGCCAGCCCCAGTGTTCTTGAGTGTATAGAAGGAGCACACAGAGCCGCCTGTATACAGCTGTGGGTGCATAACTCCACTGCCAGAGAACTCTGGGTGGATACGTACTCACTTCTTTACATCTGTGATTCCTTCGTTATGGGGAAGGAGAAGATCCATATTAATATAGTTGTGATTGGCCATGTCGATTCTGGGAAGTCCACCACCACTGGCCACCTCATTTATAAGTGTGGTGGCATTGACAAGAGAACCATCGAGAAATTCGAGAAGGAGGCTGCAGAGATGGGGAAAGGTTCGTTTAAGTATGCTTGGGTTCTGGACAAGCTGAAGGCAGAACGAGAGAGAGGCATCACAATAGACATCTCCTTGTGGAAGTTTGAGACCTCTAAATACTACATCACCATCATCGATGCTCCAGGACACAGAGATTTCATCAAGAACATGATTACAGGAACTTCCCAGGCAGACTGTGCTGTTCTTATTGTGGCAGCTGGGGTAGGTGAGTTCGAGGCGGGTATCTCTAAGAATGGACAGACGCGTGAACATGCCCTGCTGGCATACACGCTGGGTGTCAAGCAGCTGATTGTTGCCGTTAACAAAATGGACTCCACAGAGCCTTCTTACAGCGAGAAGCGCTATGACGAGATTGTTAAAGAGGTCAGTGCTTACATCAAGAAGATTGGCTACAGCCCTGCCTCTGTACCCTTCGTCCCCATTTCTGGATGGCATGGGGACAACATGCTGGAACCTTCCCCTAATATGGCATGGTTTAAAGGCTGGAAACTTGACCGGAAGGAGCAGCATGCCACTGGAATCACTCTCCTTGAGGCCTTGGACACTATCATGCCTCCTACACGTCCCACTGACAAGCCTTTACGCCTTCCTCTGCAGGATGTTTACAAAATTGGAGGCATCGGGACAGTACCTGTGGGCAGAGTGGAAACCGGCATCCTGCGTCCAGGCATGGTGGTGACCTTTGCCCCTGTCAATATCACCACAGAAGTGAAGTCTGTTGAGATGCACCACGAGTCCCTGAGTGAAGCAGTACCAGGTGATAATGTAGGATTCAATGTGAAGAACGTGTCAGTGAAGGACATTCGCAGGGGGAATGTGTGTGGAGACAGCCGGTCAGACCCACCCCAGGAAGCTTCAGGCTTCACAGCACAGGTTATCATTCTAAATCATCCAGGGCAAATCAGTGCCGGCTACTCCCCCGTCCTCGACTGTCACACGGCTCACATCGCCTGCAAGTTTGCCGAGCTGAGGGAGAAGATTGACCGTCGCTCAGGGAAGAAGCTGGAAGACAACCCCAAGTCCCTGAAGTCTGGAGATGCTGCCATTGTAGACATGATTCCAGGGAAACCCATGTGTGTGGAGAGCTTTTCTCAGTATCCTCCTTTGGGACGCTTTGCTGTGCGAGATATGAGACAAACCGTTGCTGTTGGCGTCATCAAGAACGTAGAAAAGAAAATTGGTGGGAGCGGCAAAATCACCAAATCAGCCCAAAAAGCTCAGAAAGCTGGCAAATGAATCTTGTTGCCCTTGTAGCATTGTAGTTCTGCTcccaagcagcagcagcagcagcagccccCATATTATATCTGGGCATGCTCACCTGGCCTATTGCACTTCAATCCCATTCTACATCACTGACTGGATGATTGTCATTCACATTCAGATGACTGCAAATATTTATTGAATGTTTGACATGGCTTTATTGTAATTTAAGCTCCCAGACTTAGGTCTTTACtataatatgtattataataCTGAtgttatgtatatgtaaatgtgtataaaattcaTACATAGCAGAAAGTTTCCATTTGAGGTTTGTGCTGCAGTCATAAAATGAGAGATTGTGATCAGGTTAAAGATTTGTTGTGGATTTATTCAAAACTGTGGATGCCAATAGGCTTTGACTTGATTCCTGTTTTTGTAAGCTGGACTTAATGAATGAACCAtttagaagaaataaaataaggttgTTTGACA

Function

symbol description
eef1a2 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. Is expressed in central nervous system; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 38; developmental and epileptic encephalopathy 33; and ovarian cancer. Orthologous to human EEF1A2 (eukaryotic translation elongation factor 1 alpha 2).

NR:

description
PREDICTED: elongation factor 1-alpha 2 isoform X1

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920723.2 True 2291 mRNA 0.47 8 14035800 14042467

Neighbor

gene id symbol gene type direction distance location
sulf2b sulf2,sulf2b,LOC108429304,LOC107724188,LOC107705722,LOC107693554,LOC107551524 coding downstream 88231 13814838 ~ 13947569 (-)
si:ch211-218g4.2 LOC108275877,LOC108429303,LOC107724193,LOC107696985 coding downstream 222445 13733088 ~ 13813355 (-)
phf20b phf20,LOC107594424 coding downstream 314070 13700436 ~ 13721730 (-)
ndrg3b ndrg3,ndrg3b,LOC103029397,LOC108429301,LOC107724194,LOC107705728,LOC107696989 coding downstream 336758 13635812 ~ 13699042 (-)
sla2 sla2 coding downstream 403779 13625898 ~ 13632021 (-)
mrgbp mrgbp coding upstream 105 14042572 ~ 14048229 (-)
sac3d1 sac3d1 coding upstream 7977 14050444 ~ 14054172 (-)
haus8 haus8 coding upstream 12935 14055402 ~ 14060447 (-)
pigt pigt coding upstream 29692 14072159 ~ 14086054 (-)
ppp1r3da LOC108275498,LOC108438215 coding upstream 108960 14151427 ~ 14153632 (-)
G254567 NA non-coding downstream 335395 13700009 ~ 13700405 (-)
G254600 NA non-coding downstream 339180 13692797 ~ 13696620 (-)
G254599 NA non-coding downstream 370327 13664893 ~ 13665473 (-)
G254587 NA non-coding downstream 421137 13614428 ~ 13614663 (-)
G254568 cables2 non-coding downstream 444830 13590500 ~ 13590970 (-)
G255020 NA non-coding upstream 488358 14530825 ~ 14532588 (-)
G255306 NA non-coding upstream 833177 14875644 ~ 14878506 (-)
G255403 NA non-coding upstream 1137919 15180386 ~ 15180640 (-)
G255385 NA non-coding upstream 1139690 15182157 ~ 15227960 (-)
G255435 NA non-coding upstream 1289659 15332126 ~ 15332451 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 751915 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 1101492 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 1868005 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 2176454 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 2467197 11549394 ~ 11568603 (-)
LOC113530423 LOC108276099 other upstream 86496 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 656805 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1216018 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 1615869 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 2605356 16647823 ~ 16695031 (-)

Expression


Co-expression Network