mrgbp (mrgbp)


Basic Information

Item Value
gene id mrgbp
gene name mrgbp
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14042572 ~ 14048229 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920724.2
ACCAAAACCATAAACTCGACTAGAAGAAGAAACCCCAGGACGCTTGAATAGAAAGATGGGGGAGGCTGAAGTTGTCTCTACAGACGAAAAACAAGTGGATTCCGGGGCTTGTGCTGCTGAAGAGTCAGTGGTATGGAGTCAAGAAGTGGAAGTGTGTCTGTTTCACGCGATGTTGGGTCACAAACCAGTCGGGGTCAATCGTCATTTCCACATGATTTGCATACGTGATAAATTTAGCCAAAACATTGGAAGGCAAGTGTCATCAAAGGTCATCTGGGATCACCTGGGAACCATGTATGACATGCAGGCACTGCACGAGTCTGAAATCCTTCCTTTTCCCAACTCTGAAAAGAGCTTTGTCCTACCTGAGGATATAATACAGGAGGTCAGAGAAGGGAAAGTAGGTTCAGAGGATGATATAAAGGAAGAGTTTAAAGAAGAGAGGGATCTTTCAGCCACCCATGAAGAAGGCAGCAACTCTTCAGTGAAGATGACTGAACGCTCAAGCAGTGGgcgagagaaggagaaggagcgAGAGCGTGAGAGGGAGAAAGGGAATTCAGTTGAGTCAGGTGGTGGCTCCAAGGAGGCCGCGGGTGAGAAGCGGAAGCGAAATCGGGCCACAGAAAAAACAATGAGAAACCCATCCAGCCCTGGGGGAGCCAAACGCCGCAGAACATAGTGATGGCCAACAGGGGGCATTTGGAGGATCGAACTCATCGGGACTGAGATGGCTTACTTTAGGCCTACCAGAGGCTTGGCCATGGTTAAAGTGATGCGTTGTGAGGCAGTGTTTCTGTATGAGAGGATGGTCCTCTGTTTGAGCTTTTTCAGAAGCTTGGTGTATGAGGGAACACACCAGTGCACACGTATACACAGTCTACTGAACAATAATCAGGACTCCAGTAGAAAGTATCAGCAATGATTAGAGAAGATCTTAAAAGCTTCCAGGTTGTGGATCATAGTACAGACAAATGTgcttacattgttttttttttttttttccctttggaAAGTAAGCTTTAGGTAGCAGTTTATATCTCGTTTTGTTCAAGTAACTCTGAGTAATTTCTGTACCTGAACAGAATGTTTGATGGCATTCCTTGAAAGTGGTCTGTGACTGTCATGATGATCAATTAGGGATAGGAGGCTTAGTACTTAGCTCTTAGTGCAGCTTGCTTGGTGATTACAATACAGTTCTTGCTTAAAATGCTTCTGTCGCGATTTCCTTTGGATTTCCAGACTGTCTACATGGTGAGTGTAACCTAAGTGAGATAGACTCAATGCAGGTTCCTGTATTTCCATTATGTGTTTGTTAAGAAGGAATGTGATTTTTAcaaccatctgtatttattaatttcccatttttttaaaaaaagatgtgagCAAGCCTTAAATCAGGCTTAATGTtggtttgttgtttattttataaaaaaataaatcctaatCCTTTGAATA

Function

symbol description
mrgbp Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. Orthologous to human MRGBP (MRG domain binding protein).

NR:

description
MRG/MORF4L-binding protein-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component

KEGG:

id description
K11343 MRGBP; MRG-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920724.2 True 1458 mRNA 0.43 6 14042572 14048229

Neighbor

gene id symbol gene type direction distance location
eef1a2 eef1a2,LOC108276238,LOC107724190,LOC107705720,LOC108429306,LOC107696983,LOC107551525,LOC107693560 coding downstream 105 14035800 ~ 14042467 (-)
sulf2b sulf2,sulf2b,LOC108429304,LOC107724188,LOC107705722,LOC107693554,LOC107551524 coding downstream 95003 13814838 ~ 13947569 (-)
si:ch211-218g4.2 LOC108275877,LOC108429303,LOC107724193,LOC107696985 coding downstream 229217 13733088 ~ 13813355 (-)
phf20b phf20,LOC107594424 coding downstream 320842 13700436 ~ 13721730 (-)
ndrg3b ndrg3,ndrg3b,LOC103029397,LOC108429301,LOC107724194,LOC107705728,LOC107696989 coding downstream 343530 13635812 ~ 13699042 (-)
sac3d1 sac3d1 coding upstream 2215 14050444 ~ 14054172 (-)
haus8 haus8 coding upstream 7173 14055402 ~ 14060447 (-)
pigt pigt coding upstream 23930 14072159 ~ 14086054 (-)
ppp1r3da LOC108275498,LOC108438215 coding upstream 103198 14151427 ~ 14153632 (-)
ttll9 ttll9 coding upstream 114297 14162526 ~ 14172104 (-)
G254567 NA non-coding downstream 342167 13700009 ~ 13700405 (-)
G254600 NA non-coding downstream 345952 13692797 ~ 13696620 (-)
G254599 NA non-coding downstream 377099 13664893 ~ 13665473 (-)
G254587 NA non-coding downstream 427909 13614428 ~ 13614663 (-)
G254568 cables2 non-coding downstream 451602 13590500 ~ 13590970 (-)
G255020 NA non-coding upstream 482596 14530825 ~ 14532588 (-)
G255306 NA non-coding upstream 827415 14875644 ~ 14878506 (-)
G255403 NA non-coding upstream 1132157 15180386 ~ 15180640 (-)
G255385 NA non-coding upstream 1133928 15182157 ~ 15227960 (-)
G255435 NA non-coding upstream 1283897 15332126 ~ 15332451 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 758687 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 1108264 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 1874777 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 2183226 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 2473969 11549394 ~ 11568603 (-)
LOC113530423 LOC108276099 other upstream 80734 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 651043 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1210256 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 1610107 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 2599594 16647823 ~ 16695031 (-)

Expression


Co-expression Network