perm1



Basic Information


Item Value
gene id perm1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9006742 ~ 9021145 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026920737.2
ATGGTGTGGGTAAATGAAAGAGTGGTGACAGTCCTGCTCTTGTTATCAGAGCAGATGAGTGACGAGCAGAACGATGCCATTGCTGTTTCCACCCCAGCACATCATAAGGCCCATGTGAGACTGCTCTCTGTGGCATGGCACGGGCCTTCAAAGTGTTCATACTATCCCTCAGAAAGCACAGAGAGCACGCAGGACAGCAGCAGTGGCACTGCAGAACAACTGAACAGTTTCCACTTTACTATGGATGATTTTGAGTACAGTGTCCAAATCTCTGATCTTGACTGGGACTCCTTCTTCCAAGCATGTGAAGAGTGTAACATGTTGCCCCCAGGGTTAGCAGGCCTGGATGACTCAGGAATGAGTGACATGGATGACATGGTGAACCAGCGAACACAGACTGCCACACAGACTACCTCACATGACCCAGAGCTTCAAATCGACGGCCCCCCTGACTGTGAAGGCTCTCCTGTGGAGCTTTACCTGAGCAAATATGGCTTGAGCAGTCCAGATCAAGTTCTCTCTGGCAGTGAGGACGACTTCCACTTGGAGGCTGTCAATGTGTTCTTTGAGAGGTTGAAAAGTGTCTCAGTGATGGAGGATCACACAAATTTGGGGAGTAATATGGCTGGCCGTTCAGAGGAATCTGATGTGAAAGAAGACACTAAAGAGATAGCAGTGTCTGCAGAAATATCGCAGTCATACAGAAATCAGACGGCACAGAGAAATGACTGTCATACCTATGTGCACACTGTGTCTACAGATGATGATTTAGACCAAGAAGTAAATAAATCTACCTGTCCTGGAACAGAGCTGTTTATCAGAGAAGACGACTGGTCACTGGATGAATTTAAAGAGGGAGATGAAAGGGAGGCTAAGATGAGGACACAACCAGACAAGGAAAAGAGTCCATGCAATGTTCGAGTCAATGGGAAAGAGCTTACAGACCCAAACCAGGTCAAAGAAGCAAATGACAATCAGCTAGTAACAATCAATAATTCTGACTTGCTAGTAGTTCAGGGTCAAGCTTCCAACATTACCCCAAGAAGgcgaagaagaaagaaaaagagaataagTGTAGAACTAGTGGAAATGGTTCCTGGATATGAGACTCAACTGCCAAGCAAAGTGAGTGACTCTGATGAAGACACATATGGGAGAAGAGGAGAAATGGATCGAGAGAGTCGTATGGCTGAAAACTGTGGCTCAGGGACTGTTTCTGAGGCATGCTGTGCACCTCGTGACTTTCTAGCACATCCtataaaaaattgtatttcagagaatttctcagtattttcacagtcagtcccagtgaaaggaGATATCAGGAAGTCTACACTGGTAAACCCTAATTTACAAAAAGAGCTCAGTAAGAGTGCAGTAAGCAAGAGAGAAATGGACATAATGTCTGATAGTAATCTGACTGGGAAACCAGCAGAAACTGGGCAACTTGCCATGAGAGCAGATCTCAAATCTCCTGAGCCTGGTCTTTCTGTTACAGAGACACCTCAAAGTGATGACAGTCTATCGGCACATGATAATGGAGTTAATGCAGGAAATCGTTTACAGCTTAACAGTCATTTGCCATCAGAAATGCTAGTATCTATTGCCAGCTCTGATGTATCAAAGATTGAGAGAAAACCTGTAAACATAGAAGATCTTGTTAAATTATCTGTATCACATCACACAGATGATGTCAATTCACAAAAACATAGTGCAGCATTACAGCTAGCACCTTTGATACCATCACATAATGTTGTTTACCCAGAGACACTCAAAAGTCAATTTGAAGATAGAGTGACGTTATCAGACTTTCAGTTTGATGGGCCTAGTGCAGTAGGTCAAAGGGAAACCTCAATTTCCTGTGCAACATTTCCTGAGTTAACAGACAAGTCACTCTTCTCAGCATCttacaaaaacactgaaaagaaagagaatgattTGAGAGCTAAGGGGAGTCTTTCAGAAACGTCTAATTTCAAATTATTGACACTGGCAGATCATGAAAATATGGCCCAGATAAATCACCAGAATGATCACATGACACAAATGATTGCAGCCCAAATACCAAAAGCAGACGAGATCATGGATGCTCCATCAGTTGAACCAAAAGCAGAAGTTGCAAACCAAAAAGTGTCAAAAAAGCCTGGCATCTCAAATACATCTGTGAATTCACAAAGTGAAGATTGGACAGAAGAGAAATCCCCATCTTTAAGATCAAAGAATGTGCATGAAAGCCAGAAAGGCATAAATATGAAAGCTGTTGAAATTCTGTCCCCTGGTATCAAAGGAGACCGAAATGAGGAACTGTCTCGTAAGGGGCAGATCAAGGAATACCAGACTCTGATGCACACCACTGAACCAGACAGTCAACTTTCAGATTACTCAAAGTCAGAACTCACAATGTCTAATATTCTTACAAGTGGTGAAGAAGTAAAAGGTCAAATTCTCTATGTAGATACACCACCTTGTTTTTCATCTAAAGACCATGACCTGTCACCTACTATAGTTGTACAGCATTCaccatctcctcctcctgagTCAACAGGTGGAGCTAAAAGTCTAGAAATGGTAGATCCTGATCCTGTAAGTCAACTCACGCCTCCTATATATGCTATATCTTCCTTTTGGAATGAAATGGAGAAGCTGACCATAAATGATATTTTGCGACTCCGTCTGGTTGGCCAAGCTCAGTACCCCAGTGTGCTACTCCAGCCAGAGGATAGCAGTATTGCAGATGTGACAAATGCAGGGGATTCAGGATATTTTACGCACTCGGATGAATCCAAGCCTGACCATTCCATTAGGAATATGTCATTCATATCTGACTTTGATGGAGAGCTTGCACAGCTCCTATCTCCAGATGCAGCTAAACTAGATGAGGGGATAAGAGAGTCTCCTAACCCAACAGGCATCCTTTGGGAAAGTGATCCAAATCTGTCTGGAACTGCACCTGGAGTGGAAGACGTGTTTAATTCAGATACAGCCCATTCATCTTCTCTCTATAGAAATAATTCCAATCATTGCTTCAGGaagatgtgcaaaaatattaGTGTCCAGAACTTGCAAGCTCTTGAAGGTCAAAACCTGGGAAAAATCCTGAGAAATGCCTCTCATCACTCCATCCATTCTGTTTACTCCACTCATTCCGAAGTTGAGGATGACTATGTAGATCCATTCGATCGTGTTGAAACTTCATCCCCAGTGTATCTCTCTGATGAGGAGGAGATGGACAGCACTGGCATCACTTTCTCAGAGATCATTGAGTATCTGTTTGGTACGGATGAACCTGAGCAGTCTGCCTCTGAGGCACACACTATAGCTGCTTCTTATCTCAATGGAACTGAGACCTCTGTCCCTGAGATGTATGACCATTTCTTTTCAGAGTTTGAGcctgaaaatttattttaccCACTTGCAGACAACAACAGCAGTACGAACGATGAGCTGGTTCCCATTTTCTCCTCCTCACGCTCAGCAACCCGGAACGTCCAGTTCCCTGAGGTGTATGATTACTTTTTTCCAGACGATTCCCCTGTTCActcagatgaagatgaggaaCCTGAGCATACAGTCATACGAGTGGTCACACGATATGACCACATGCCAACCAAGAACCATGATTCTGTGGCAGCCTCAGACCCACACAAACAATTTTTCCCTGAGAAAGATAATAGCTGGAACTTCCTGTGGACAAACCCTTTTTCATTTAGGAAAGTCAGGCGCACAGGATTCACAGTCCCACCTGAGGAGTCCAGTTCTCAGGCTCTGACGCCTGTAAAAAATACTGGCAGGTCATTTCGTGGAGGAATTCAACCTATAAACATATTGGGTATTGATGAGAGCCCATTTCCAGACCCGCTGATTCTCAGCCTGGAGAACCGCATCTTCAGACAGCTGGCAGAGCAGCAGAAGATATGCAACAAGATGCAGACAGCTGTTGCTGATCCAAGACTGGATGCACCACTGTTGCCCATTAAACAGGCAGATATGTGCTTGGTTTGCATTGCCTTTGCCTCATGGGTCCTGAAGTCAGTCAACCCTCAAGGAGCTGATACATGGAAAGCTGTTCTATTGGCGAATGTAAGTGCTCTGTCTGCCATCCGATACCTCCGGAGATTCACGAGGGATGAGGCGGCCAAGATATCTCCACTGCGTCAGATCAAGCCTGCGTAAATCTGACCACAGGCCTCTGAGTGTTGCCAGGTCACCTTTCAGTCAGTCACTCCATTTTCCTATGTAACCCTATACATATCATAAGCTGTGCTTGCAAAAAATATCATGTGATTAATTAATAATCTTCATCTATAAACTTGCTCATTGAGCCAAGACAACGGGCATTAGCTTTCATATTCTTCAAGGAACACTTCATAACAatgcagtataaaataaaatgaccaaaTCTTGAGATTTCATGAGCAGTGTAGTACAGTTCTGCCAGTTTTTTGTGGGCAAAGAGAATCAGGTAAGTTTTTGATCGTTAGTAAGGTAAGATAAGTGGGAGTATAATATAAGGTGTTGATCATGAGGTAAGATAAGGGCATTAACTTTCATCACATGCAATATTCTTGAAACTGACCAATCCTGTGATGAAAGGTATGCTATAAGTgatgatgtttaaaatggtATTTCTTGTGGACAGGAGAAACAGCATTCAGCAGAAGGTAGAAGAGAAAGTGAATAAGGGCAGTTGTACAGTGGCTCAtagaaattaatgaaatgaaattaacaaaatgctgaaatttgGGTCCAAGCACAAAAATGCTTTCAGTTGTGACAAGTTGTGCATCACTAAAGGATAAActatatcatttaatttattatgaatGCCCATAACCTGTGAATGAGGTTGCTTATGGAGCACATACAGCTATACAGCTGTGATATAAAGCCCAATTGTGttgataaatacataaataattttagGGACTTGATCTAATATATTGGTGTTCGAGTGCTATCTACTGCTATGTATCCTTACAATAATAGTGCTAacatatcatatatttattatcacctctacttctttgttttgttttgtttttcttcttagaCAGTCCTTTCTGGACAGTGCAAGA

Function


NR:

description
PREDICTED: uncharacterized protein LOC106572134

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026920737.2 True 5075 mRNA 0.42 5 9006742 9021145

Neighbor


gene id symbol gene type direction distance location
her9 hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146 coding upstream 47547 8957394 ~ 8959195 (+)
arhgef19 arhgef19,LOC103150465,LOC106926263 coding upstream 454349 8533132 ~ 8552393 (+)
ano11 ano7l1,LOC107737547,LOC107716119,LOC107591089,LOC107593934 coding upstream 475071 8513140 ~ 8531671 (+)
plekhm2 plekhm2 coding upstream 497566 8493582 ~ 8509176 (+)
ddost ddost,LOC107673085,LOC107687429 coding upstream 515935 8483668 ~ 8490807 (+)
noc2l noc2l coding downstream 47560 9068705 ~ 9107223 (+)
ca6 ca6 coding downstream 390328 9411473 ~ 9417779 (+)
spsb1 spsb1,LOC103042472,LOC107716103,LOC107703063,LOC107687410,LOC107591103 coding downstream 448927 9470072 ~ 9489862 (+)
phc2a phc2,LOC108434472 coding downstream 658457 9679602 ~ 9728769 (+)
ephb2a LOC108275960,LOC108434494 coding downstream 770633 9791778 ~ 9847969 (+)
G251462 NA non-coding upstream 334503 8651601 ~ 8672239 (+)
G251463 NA non-coding upstream 372957 8629935 ~ 8633785 (+)
LOC117599296 NA non-coding upstream 406624 8597737 ~ 8600118 (+)
G251424 NA non-coding upstream 497095 8509434 ~ 8509647 (+)
G251418 NA non-coding upstream 523185 8483292 ~ 8483557 (+)
G251747 NA non-coding downstream 18050 9039195 ~ 9039398 (+)
G251760 NA non-coding downstream 53211 9074356 ~ 9074629 (+)
G251783 NA non-coding downstream 109806 9130951 ~ 9223205 (+)
G251782 NA non-coding downstream 199797 9220942 ~ 9231917 (+)
G251801 NA non-coding downstream 212068 9233213 ~ 9238533 (+)
LOC113530359 rnf223 other upstream 379717 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 561137 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 624559 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 668676 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 750594 8253674 ~ 8256148 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 1249658 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 1751526 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 1822466 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 1850884 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 2210233 11231378 ~ 11237367 (+)

Expression



Co-expression Network