edem2 (edem2,LOC107697010)


Basic Information

Item Value
gene id edem2
gene name edem2,LOC107697010
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15976896 ~ 16034838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920739.2
CTTCCTGTATCAACTGAGCCATAAAGCTATCTGAAGTGTCTTGTAATAAATGTACCTTGGAATTATTATAGTGCTTAATTTTTCTAACATATCACAGCTTCATGCTTACTTTCCTGCTTAACGCCATTTTCTGCGCAACATACCTGTTTCCGATCAACAGCCATGCCTTTACTAAGCGGGAAATGTCTCATTATAGAGACAGAATAAAGTCCATGTTTTACCATGCCTACAACAACTACTTGGAAAATGCATATCCATATGATGAGCTCCGGCCATTGACATGTGATGGACAGGATACATGGGGCAGTTTTTCACTTACTCTTATTGATGCCCTGGATACCTTGCTGATATTGGGGAACCACACAGAGTTTCAACGGGTGGCCACTCTTCTTCAGGACAATGTGAATTTTGACATTGATGTAAATGCCTCAGTGTTTGAGACAAACATACGAGTGGTCGGTGGTCTCCTCTCAGCTCACCTGTTGTCCAAGCAGGCTGGGATCACTGTAGAGGAGGGCTGGCCATGCTCTGGTCCTCTGCTCCGCTTGGCTGAGGATGCAGCACGCAAACTTCTCCCAGCATTCCACACACCCACTGGTATGCCCTATGGCACAGTGAACCTGCTGAGGGGTGTCAGCCCCACTGAGACTCCCATTACCTGCACAGCTGGCGTGGGCACATTCATCCTGGAGTTTTCCACCCTGAGCCATCTCACTGGAGATCCTGTGTTTGAAGACGTGGCCCGAAAGGCTCTCGTTGCCCTGTGGAAAACCCGGTCGGATATTGGCCTGGTTGGGAACCATATTGATGTCATTACCTCAAAATGGGTCGCTCAGGATGCAGGTATCGGGGCAGGGATTGATTCATACTTTGAGTACTTGTTAAAGGGTGCAATCATGCTGCAAGATGAGGAACTTCTTAACATGTTTCATGAGTTTGATATGTCCATAAGGAACTACACTAAGTTTGATGACTGGTACCTATGGGTGCAGATGCATAAGGGTACTGTTTCCATGCCTATATTTCAGTCTCTGGAGGCATTCTGGCCTGGCCTGCAGAGTCTTATAGGGGATATAGAGAGTGCGACAAGGACCTTCCATAACTACTGTACAGTGTGGCGTCAGTTTGGTGGACTTCCAGAGTTCTACAGTATTCCTCAGGGCTATACTGTGGACAAGCGAGAAGGATATCCTCTACGACCAGagttGATAGAGAGTGCAATGTACCTGTATAAGGCCACGGGTAACCCAGCATTTCTGCAACTAGGCAGGGATGCAGTGGAGTCCATAGAGAAGATAAGCCAAGTTAAATGTGGATTTGCAAGTgTGAAGGATGTGAGAGACCACAAGCTAGACAACCGGATGGAGTCATTCTTCTTGGCTGAAACTATCAAGTACCTTTACCTGCTGTTTGATCCTGACAACTTTATTCACAACACAGGCACAACATTTGAACTGGGCGGGGCACATGGGGACTGCATTCTGGGGGCAGGGggttatatttttaatacagagGCACATCCACTTGATCcagctgcattgcattgctgcAGCAAGGACCAAGATGAGCGCTCAGAGCTACAGGACATCCTCCTGAGCTTAACCGAGCACTATAAGCCTTCCATGGACCAATCAGACGAGGCTTTGGGAGACAGAAATTCAGAAAGGATACCATTAAGTCctagagaaagaagaaaagcaatTCGGCTGTCCTGCCCAGTGCAAAGTTTCAGTGCTCGATTTGCAGTCATGGGTCAAGTCTTTTCTGACAGCACATGAACAGAAATTGTTCTGAGATTaagatgtaaaatattaaatttttaaaaaatatttactgaaaACGTGAAATTTTCCCACCTTATatgtaaaacagaaatatgtgtggcagcctgggaaaacctgtcagatgtcactgtggctgaataaaactgataaataaataatatttaaaatgcaaatgtacagtaaaggaataaaataattgttatatgcagtttttgttaaaaataccAAACAATGCCAGCAAGTCATGACATCATGTTTCTAATCATGTTTGATACTACATTACCTTGTCCATCTTGATGTGCCTGAGATAGCCAGCAAGCTAACTAGTTAGAGTACAATGGAGTAAATACAGTTTTTGAAGAGAAAATGACCAGAAGCTGTACAGCCCGAAGAACCACCACAGAAAAGCTCCACTGCTAGTAAAATTAGCAAATATGACCCAGCACACACAAAATATGGTTTCACTTCAGCCAGCTAAAATGGCAATGGAGACACTCACGAACAAGGCTTTAAAGCCATCTAAACTTGAGAGACACTTAAAAcaaagtgtctttttttaaatgcaaattggAAAGTCATTTAGAAATCAAGCCACTATTACTGAAAGAGCATTGAAAGCATCATTTTTTTAGCCTCATACCACATTGCTCGAGCTTGAGAattgctcatttatgcagttattcaatcagccaatcaagatGCGATCgaagtatagactttcagctttattttaagaggttccacaaaaatatggcatttaccatttaggaattacaggaAAGCCACATTATACTTTGCCGGAAAACATCTAAacaaaagcctcccatgttctggaataagattctttggactgatgaaaccataTATACCACATcttgtgtcaaacatggtggaggcagtgttat
>XM_034311949.1
TTTCTAACATATCACAGCTTCATGCTTACTTTCCTGCTTAACGCCATTTTCTGCGCAACATACCTGTTTCCGATCAACAGCCATGCCTTTACTAAGCGGGAAATGTCTCATTATAGGTTGctctaaatgtacaaaatagcCATTCCAGAGGAACTACTGGAAATGTACAAAGAGAGACAGAATAAAGTCCATGTTTTACCATGCCTACAACAACTACTTGGAAAATGCATATCCATATGATGAGCTCCGGCCATTGACATGTGATGGACAGGATACATGGGGCAGTTTTTCACTTACTCTTATTGATGCCCTGGATACCTTGCTGATATTGGGGAACCACACAGAGTTTCAACGGGTGGCCACTCTTCTTCAGGACAATGTGAATTTTGACATTGATGTAAATGCCTCAGTGTTTGAGACAAACATACGAGTGGTCGGTGGTCTCCTCTCAGCTCACCTGTTGTCCAAGCAGGCTGGGATCACTGTAGAGGAGGGCTGGCCATGCTCTGGTCCTCTGCTCCGCTTGGCTGAGGATGCAGCACGCAAACTTCTCCCAGCATTCCACACACCCACTGGTATGCCCTATGGCACAGTGAACCTGCTGAGGGGTGTCAGCCCCACTGAGACTCCCATTACCTGCACAGCTGGCGTGGGCACATTCATCCTGGAGTTTTCCACCCTGAGCCATCTCACTGGAGATCCTGTGTTTGAAGACGTGGCCCGAAAGGCTCTCGTTGCCCTGTGGAAAACCCGGTCGGATATTGGCCTGGTTGGGAACCATATTGATGTCATTACCTCAAAATGGGTCGCTCAGGATGCAGGTATCGGGGCAGGGATTGATTCATACTTTGAGTACTTGTTAAAGGGTGCAATCATGCTGCAAGATGAGGAACTTCTTAACATGTTTCATGAGTTTGATATGTCCATAAGGAACTACACTAAGTTTGATGACTGGTACCTATGGGTGCAGATGCATAAGGGTACTGTTTCCATGCCTATATTTCAGTCTCTGGAGGCATTCTGGCCTGGCCTGCAGAGTCTTATAGGGGATATAGAGAGTGCGACAAGGACCTTCCATAACTACTGTACAGTGTGGCGTCAGTTTGGTGGACTTCCAGAGTTCTACAGTATTCCTCAGGGCTATACTGTGGACAAGCGAGAAGGATATCCTCTACGACCAGagttGATAGAGAGTGCAATGTACCTGTATAAGGCCACGGGTAACCCAGCATTTCTGCAACTAGGCAGGGATGCAGTGGAGTCCATAGAGAAGATAAGCCAAGTTAAATGTGGATTTGCAAGTgTGAAGGATGTGAGAGACCACAAGCTAGACAACCGGATGGAGTCATTCTTCTTGGCTGAAACTATCAAGTACCTTTACCTGCTGTTTGATCCTGACAACTTTATTCACAACACAGGCACAACATTTGAACTGGGCGGGGCACATGGGGACTGCATTCTGGGGGCAGGGggttatatttttaatacagagGCACATCCACTTGATCcagctgcattgcattgctgcAGCAAGGACCAAGATGAGCGCTCAGAGCTACAGGACATCCTCCTGAGCTTAACCGAGCACTATAAGCCTTCCATGGACCAATCAGACGAGGCTTTGGGAGACAGAAATTCAGAAAGGATACCATTAAGTCctagagaaagaagaaaagcaatTCGGCTGTCCTGCCCAGTGCAAAGTTTCAGTGCTCGATTTGCAGTCATGGGTCAAGTCTTTTCTGACAGCACATGAACAGAAATTGTTCTGAGATTaagatgtaaaatattaaatttttaaaaaatatttactgaaaACGTGAAATTTTCCCACCTTATatgtaaaacagaaatatgtgtggcagcctgggaaaacctgtcagatgtcactgtggctgaataaaactgataaataaataatatttaaaatgcaaatgtacagtaaaggaataaaataattgttatatgcagtttttgttaaaaataccAAACAATGCCAGCAAGTCATGACATCATGTTTCTAATCATGTTTGATACTACATTACCTTGTCCATCTTGATGTGCCTGAGATAGCCAGCAAGCTAACTAGTTAGAGTACAATGGAGTAAATACAGTTTTTGAAGAGAAAATGACCAGAAGCTGTACAGCCCGAAGAACCACCACAGAAAAGCTCCACTGCTAGTAAAATTAGCAAATATGACCCAGCACACACAAAATATGGTTTCACTTCAGCCAGCTAAAATGGCAATGGAGACACTCACGAACAAGGCTTTAAAGCCATCTAAACTTGAGAGACACTTAAAAcaaagtgtctttttttaaatgcaaattggAAAGTCATTTAGAAATCAAGCCACTATTACTGAAAGAGCATTGAAAGCATCATTTTTTTAGCCTCATACCACATTGCTCGAGCTTGAGAattgctcatttatgcagttattcaatcagccaatcaagatGCGATCgaagtatagactttcagctttattttaagaggttccacaaaaatatggcatttaccatttaggaattacaggaAAGCCACATTATACTTTGCCGGAAAACATCTAAacaaaagcctcccatgttctggaataagattctttggactgatgaaaccataTATACCACATcttgtgtcaaacatggtggaggcagtgttat
>XM_034311950.1
ATATTGGGGAACCACACAGAGTTTCAACGGGTGGCCACTCTTCTTCAGGACAATGTGAATTTTGACATTGATGTAAATGCCTCAGTGTTTGAGACAAACATACGAGTGGTCGGTGGTCTCCTCTCAGCTCACCTGTTGTCCAAGCAGGCTGGGATCACTGTAGAGGAGGGCTGGCCATGCTCTGGTCCTCTGCTCCGCTTGGCTGAGGATGCAGCACGCAAACTTCTCCCAGATCCCTATCCAATCAAGCATccgtgggatgtgctggacaaacaagtacggtccatggaggccccacctcgagcttacaggacttaaaggttctcctgctaacatcttggtgcaaGATACCACAGCATACCTTCAGAAgccttgtggagtccatgcctcgacagCATTCCACACACCCACTGGTATGCCCTATGGCACAGTGAACCTGCTGAGGGGTGTCAGCCCCACTGAGACTCCCATTACCTGCACAGCTGGCGTGGGCACATTCATCCTGGAGTTTTCCACCCTGAGCCATCTCACTGGAGATCCTGTGTTTGAAGACGTGGCCCGAAAGGCTCTCGTTGCCCTGTGGAAAACCCGGTCGGATATTGGCCTGGTTGGGAACCATATTGATGTCATTACCTCAAAATGGGTCGCTCAGGATGCAGGTATCGGGGCAGGGATTGATTCATACTTTGAGTACTTGTTAAAGGGTGCAATCATGCTGCAAGATGAGGAACTTCTTAACATGTTTCATGAGTTTGATATGTCCATAAGGAACTACACTAAGTTTGATGACTGGTACCTATGGGTGCAGATGCATAAGGGTACTGTTTCCATGCCTATATTTCAGTCTCTGGAGGCATTCTGGCCTGGCCTGCAGAGTCTTATAGGGGATATAGAGAGTGCGACAAGGACCTTCCATAACTACTGTACAGTGTGGCGTCAGTTTGGTGGACTTCCAGAGTTCTACAGTATTCCTCAGGGCTATACTGTGGACAAGCGAGAAGGATATCCTCTACGACCAGagttGATAGAGAGTGCAATGTACCTGTATAAGGCCACGGGTAACCCAGCATTTCTGCAACTAGGCAGGGATGCAGTGGAGTCCATAGAGAAGATAAGCCAAGTTAAATGTGGATTTGCAAGTgTGAAGGATGTGAGAGACCACAAGCTAGACAACCGGATGGAGTCATTCTTCTTGGCTGAAACTATCAAGTACCTTTACCTGCTGTTTGATCCTGACAACTTTATTCACAACACAGGCACAACATTTGAACTGGGCGGGGCACATGGGGACTGCATTCTGGGGGCAGGGggttatatttttaatacagagGCACATCCACTTGATCcagctgcattgcattgctgcAGCAAGGACCAAGATGAGCGCTCAGAGCTACAGGACATCCTCCTGAGCTTAACCGAGCACTATAAGCCTTCCATGGACCAATCAGACGAGGCTTTGGGAGACAGAAATTCAGAAAGGATACCATTAAGTCctagagaaagaagaaaagcaatTCGGCTGTCCTGCCCAGTGCAAAGTTTCAGTGCTCGATTTGCAGTCATGGGTCAAGTCTTTTCTGACAGCACATGAACAGAAATTGTTCTGAGATTaagatgtaaaatattaaatttttaaaaaatatttactgaaaACGTGAAATTTTCCCACCTTATatgtaaaacagaaatatgtgtggcagcctgggaaaacctgtcagatgtcactgtggctgaataaaactgataaataaataatatttaaaatgcaaatgtacagtaaaggaataaaataattgttatatgcagtttttgttaaaaataccAAACAATGCCAGCAAGTCATGACATCATGTTTCTAATCATGTTTGATACTACATTACCTTGTCCATCTTGATGTGCCTGAGATAGCCAGCAAGCTAACTAGTTAGAGTACAATGGAGTAAATACAGTTTTTGAAGAGAAAATGACCAGAAGCTGTACAGCCCGAAGAACCACCACAGAAAAGCTCCACTGCTAGTAAAATTAGCAAATATGACCCAGCACACACAAAATATGGTTTCACTTCAGCCAGCTAAAATGGCAATGGAGACACTCACGAACAAGGCTTTAAAGCCATCTAAACTTGAGAGACACTTAAAAcaaagtgtctttttttaaatgcaaattggAAAGTCATTTAGAAATCAAGCCACTATTACTGAAAGAGCATTGAAAGCATCATTTTTTTAGCCTCATACCACATTGCTCGAGCTTGAGAattgctcatttatgcagttattcaatcagccaatcaagatGCGATCgaagtatagactttcagctttattttaagaggttccacaaaaatatggcatttaccatttaggaattacaggaAAGCCACATTATACTTTGCCGGAAAACATCTAAacaaaagcctcccatgttctggaataagattctttggactgatgaaaccataTATACCACATcttgtgtcaaacatggtggaggcagtgttatgg

Function

symbol description
edem2 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human EDEM2 (ER degradation enhancing alpha-mannosidase like protein 2).

NR:

description
PREDICTED: ER degradation-enhancing alpha-mannosidase-like protein 2

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K10085 EDEM2; ER degradation enhancer, mannosidase alpha-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920739.2 True 2689 mRNA 0.43 11 15976896 16034836
XM_034311949.1 False 2667 mRNA 0.43 12 15976976 16034836
XM_034311950.1 False 2507 mRNA 0.44 9 15999964 16034838

Neighbor

gene id symbol gene type direction distance location
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding upstream 33893 15895643 ~ 15943003 (+)
LOC113530581 NA coding upstream 436166 15519342 ~ 15540730 (+)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 571249 15399806 ~ 15405647 (+)
ddx23 ddx23 coding upstream 585733 15364156 ~ 15391163 (+)
soga1 soga1 coding upstream 924505 15008121 ~ 15052391 (+)
baz2a baz2a coding downstream 24474 16059312 ~ 16173060 (+)
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding downstream 554552 16589390 ~ 16620443 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding downstream 760462 16795300 ~ 16823847 (+)
bin2a bin2 coding downstream 795728 16830566 ~ 16846985 (+)
pou6f1 pou6f1 coding downstream 838025 16872863 ~ 16914072 (+)
G255798 NA non-coding upstream 27307 15949213 ~ 15949589 (+)
G255780 NA non-coding upstream 95031 15881386 ~ 15881865 (+)
LOC113530859 NA non-coding upstream 151444 15823288 ~ 15825452 (+)
G255650 NA non-coding upstream 318754 15657777 ~ 15658142 (+)
G255649 NA non-coding upstream 319269 15652846 ~ 15657627 (+)
G255809 NA non-coding downstream 8317 16043155 ~ 16048021 (+)
LOC117599274 NA non-coding downstream 13724 16048562 ~ 16052382 (+)
G255815 NA non-coding downstream 143299 16178137 ~ 16181020 (+)
G256044 NA non-coding downstream 470224 16505062 ~ 16505504 (+)
G256045 NA non-coding downstream 471939 16506777 ~ 16507014 (+)
rps21 rps21,LOC107666483 other upstream 809228 15117070 ~ 15167668 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 1302944 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 1904680 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 3006887 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 3122516 12837051 ~ 12854380 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 175252 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 197175 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 328708 16363546 ~ 16396245 (+)
G256046 NA other downstream 473187 16508025 ~ 16508380 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 1036298 17071136 ~ 17124951 (+)

Expression


Co-expression Network