gid8b (gid8b,gid8,LOC108276161,LOC107560896,LOC108231957,LOC107391203,LOC105906441)


Basic Information

Item Value
gene id gid8b
gene name gid8b,gid8,LOC108276161,LOC107560896,LOC108231957,LOC107391203,LOC105906441
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12083985 ~ 12087721 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920760.2
TCTGGCAACACGCGTAATCTCGTTTGTTACGAACTCGCGCGAGATCAGACTCGTTGCGGCCCTGCTCGCCTGCACTACAAGCTGCTGTAGCAGTAAGAGTATCAGACCCCCAATGATGAGTTATGCTGAAAAGCCCGAGGACATAACTCGAGACGAATGGATGGAAAAGCTCAACAACGTCCACGTTCAGCGGGCAGACATGAATCGGCTCATCATGAATTATCTGGTGACAGaggGTTTTAAGGAGGCAGCAGAGAAATTCAGACTGGAATCAGGAATCGAGCCAAGTGTTGACCTGGACTCACTAGATGAGAGGATAAAGATCAGAGAGATGATTCTGAAGGGCCAGATTCAGGAGGCCATTGCACTGATCAACAGTCTGCATCCTGAACTTCTAGATACTAATCGCTACCTGTACTTCCATCTCcagCAGCAGCACCTGATTGAGTTAATTCGCCTGCGGGAGACCGAGGCGGCGCTGGAGTTTGCACAGACGCAGCTGGCTGAGCAGGGCGAGGAGAGTAGAGAGTGTCTGTCTGAGATGGAGCGCACGCTGGCACTGCTGGCCTTTGATAACCCTGAGGACTCACCATTTGGAGATCTCCTCAACATGATGCAGAGACAGAAGGTGTGGAGTGAAGTAAACCAAGCTGTCCTGGACTATGAGAACCGAGAGTCGACGCCCAAACTGGCAAAACTCCTAAAACTTCTGTTGTGGGCTCAGAATGAACTGGATCAGAAGAAAGTCAAGTACCCTAAAATGACTGATCTGAGCAAGGGCACTATCGAGGACCCCAAGTAGAGAGGAACACGAGAGCTGCTCAGTGTTAGAGTTGTGTGggaaataaaatggacatttttgcCTCCCCTTTCACTATTTATATTCAGTCAGtgactgattgtttttttttctgtttagcaTACTTATAATTGCTATTGCTTATCAGAGACTTTTTGCATTAAATGGGTTGTGCAACTGGgaatgtttgtattttaaatctgatttatgGCCAAAACAGGAACACTTTTGAACACGGAGACAAATGATTTTGTTACCTCTGTATTTGAAAAAGTGATTAGAATGGACTTTTAGCCATTGTGTTTTGAAGAGAATTGCTGTTCTGTCTACTTTGTCCacaaatattcagaaatattactgttcagagattttttttttttgtagattatGTTCTGGACCTAATGGCAGATCATCGTAACACATCAGATAAGTGTAACATTCAGGTTTTCCTACCTCATCTGTGGATCTCTGTCCACGAGTGTGAATCATTTCAACAGGACAGATGAAATGGGTGATGGTGGAACTTTGGTTTCTGTAACTTTATTTGCAGTGCAAAGGACTGTAATGAGgaaaagaaataacattttgtaaatgtattagAGAGTATTATGGAGGATCATCTGCTCTGTGAATATTTCTCATTTCATTATGATAATCTGGTAATATTTTCCCTGCTCACATTGTATGATTTATAGAGTTCAATAAGTGAGATCTTAGATGCAAGATGTCAGATGCTTTACATAGgtattaaatactttttttt

Function

symbol description
gid8b Involved in positive regulation of canonical Wnt signaling pathway. Acts upstream of or within determination of dorsal identity. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including endoderm; hatching gland; mesoderm; notochord; and tail bud. Orthologous to human GID8 (GID complex subunit 8 homolog).
gid8 Predicted to enable protein homodimerization activity. Involved in positive regulation of canonical Wnt signaling pathway and positive regulation of cell population proliferation. Located in cell junction; cytosol; and nucleoplasm. Part of ubiquitin ligase complex.

NR:

description
PREDICTED: glucose-induced degradation protein 8 homolog

GO: NA

KEGG:

id description
K23338 GID8; glucose-induced degradation protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920760.2 True 1562 mRNA 0.42 5 12083985 12087721

Neighbor

gene id symbol gene type direction distance location
slc17a9b slc17a9,slc17a9b,LOC107563661,LOC107560897,LOC106566596 coding downstream 452 12068589 ~ 12083533 (-)
rnd1a rnd1a,LOC108275558,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding downstream 151490 11926906 ~ 11932495 (-)
prim1 prim1,LOC107741309 coding downstream 168001 11907926 ~ 11915984 (-)
naca naca,LOC106571941 coding downstream 183523 11892151 ~ 11900462 (-)
trnae-cuc_33 NA coding upstream 53381 12141102 ~ 12141173 (-)
zgc:194282 srms,LOC108276248,LOC108435233,LOC107657057,LOC107747981,LOC107672012,LOC107560891 coding upstream 80806 12168527 ~ 12185778 (-)
nol4lb nol4l,nol4lb,LOC107563666,LOC107672011 coding upstream 100073 12187794 ~ 12285570 (-)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919 coding upstream 218432 12306153 ~ 12316352 (-)
ube2t ube2t coding upstream 307723 12395444 ~ 12400748 (-)
G253538 NA non-coding downstream 179299 11904277 ~ 11904686 (-)
G253509 NA non-coding downstream 306052 11777718 ~ 11777933 (-)
G253492 NA non-coding downstream 326055 11755205 ~ 11757930 (-)
G253499 NA non-coding downstream 339827 11743950 ~ 11744158 (-)
G253494 NA non-coding downstream 369232 11712997 ~ 11714753 (-)
LOC113530483 NA non-coding upstream 55912 12143633 ~ 12150945 (-)
G253749 NA non-coding upstream 129703 12217424 ~ 12217744 (-)
G253843 NA non-coding upstream 304642 12392363 ~ 12393653 (-)
LOC113530910 NA non-coding upstream 518820 12606541 ~ 12607682 (-)
G253977 NA non-coding upstream 573523 12661244 ~ 12709317 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 224639 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 515382 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 621279 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 1058976 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 1068319 11009463 ~ 11015666 (-)
ptk6b LOC108276246 other upstream 68007 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 809753 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1163419 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 2041242 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 2611551 14699272 ~ 14704270 (-)

Expression


Co-expression Network