idh3g (LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912)


Basic Information

Item Value
gene id idh3g
gene name LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18693407 ~ 18703924 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920788.2
GCATACAAGCATTTGGGATTCAACCGTGCTTTGGTACCCTGAAATCTAAGATGGCGACCTCCAGAGCAGTGCTGTCTCTCTCCAAAGCTCTAAAGCCAATACGGCTGGGAAATACAGTTAAAGTATTTGGAACAGCACTCTCCACCCAAAGGGAGAAATCTACATACACAGGAAAAAGCATTCCTCCCCCTGCAAGATATGGAGGCAGACACACGGTGACACTGATCCCAGGAGACGGGATCGGCCCAGAGCTGCTTAACCACGTGCGAGAGCTCTTCAGGTTCAGCTGCGTTCCTGTGGACTTTGAGGTGGTCAATGTCAACTCTTCCCTAACTAACGAGGACGACATCAACAACGCCATCACAGCTATACGCCGTAATGGAGTCGCTCTTAAGGGTAACATTGAGACAAACCACACACTGCCTCCGTCACACAAGTCAAGGAACAATCTTCTCCGCACCAGTCTGGACCTGTATGCTAATGTGATGCACTGCCAGTCCTTGCCGGGGGTTCAGACCCGCCACAAGAACattgacatcatcatcattagagAGAACACCGAGGGCGAATACAGCAGCCTTGAGCATGAGagtgtacCCGGTGTGGTGGAATCCCTAAAGATCATCACACGGAACAACTCTCTGCGTATTGCTGAGTACGCCTTCAAGTTGGCCAGAGAGAAAGGGCGACGCAGGGTCACAGCTGTACACAAGGCTAACATCATGAAACTAGGCGATGGCCTCTTTCTCCAATGCTGTAAGGAGGTGGCCGCTGGATACCCTGACATTGCCTTCGACAGCATGATTGTAGACAACACCACTATGCAGCTTGTTTCCAAGCCCCACCAGTTTGATGTCATGGTGATGCCTAATCTGTATGGTAACGTGGTCAGCAACGTGTGTGCCGGGCTAGTGGGCGGACCCGGGCTGGTCCCCGGAGCCAACTACGGGAATGATTATGCTGTTTTTGAAACAGCCACTAGGAACACAGGGAAGAGCATCGCTGGCCGGAACATTGCCAACCCCACTGCAATGCTACTGGCCAGCTGTCTCATGCTGGATCACCTCAGACTTCACGAGTATGCCAGCATGATCCGTAATGCGATTTTCACCACTATGAACGAGACTCAGTTGCATACAGCAGACATAGGAGGGCAGGGCACGACCTCGGAGGTGGTACAGTCCGTCATGAGGAACATCAAGAGCAGTGGACCCCTCACTGCAGAGCTATAATGCCATAACTAAACACCACAACAGCCATAAATGATTCTCGAACATCAGCACTCCAGCATATGGACAGAGGATCaagatatactgtatttatgctGTTTACAGGTTGTATTGGAAGACTTGGAAGTTTGTTTGGATTCTTTTGGTGTCCATCTAGGGCCACATGCGTGCCATGCAACATAACGGTTATATTATGTGTTAATATGATATTTATGTGGCGGTATTGTGCAAGGTTATGGTTTATAATGTCAAAAAGCATTCCATGGTTAAACGACCTTGAGTTGCAAGAATATGTTTCGTGCAGCCATGTAGTCATTTTGGAGTggtttatttaatcattcatgAAATCCATTGTTCTGTCCCAGCTATAGACAAAAGTAGGCCAAATTATTTGATAAAGGTGCTTATTAAACTTTTCTTAATTTATGTTCAGTATTTTCTAAAATCATCTAATATTCAGGGAAATAATAAGTTATCCAAGAAACTTAATATTTTCAAGTTCCCAGGATGTAAATATGGAACCTTACTGAATTCTCAAAATTTCTAAGTGACCTTTTCCTTTGGCTCAGTACAGTAGTGTTCATAAGTTTAATCTTGTGCTTACTATTTTAACACGGTTCAATTTCTTTCACATGCATACCTTATCTGCAATATTTATCTGTAAAACGGTATCTTGTTTGATTCTTTATATCCTATTGCATTTCCATTGTTACATTGTtgcattctggaaaaaaaaaagaattgtatgGTTTAACATGTATCGGCACTGACATTTTACATCAATAAAGTGGTTTATAAACTTCCTTA

Function

NR:

description
PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1

GO: NA

KEGG:

id description
K00030 IDH3; isocitrate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920788.2 True 2036 mRNA 0.44 14 18693407 18703924

Neighbor

gene id symbol gene type direction distance location
avpr2aa avpr2,LOC108275493 coding downstream 18195 18657095 ~ 18675212 (-)
LOC117595686 plekhg5,LOC107714916,LOC107697827,LOC107664198 coding downstream 85989 18565524 ~ 18607418 (-)
plekhg5b plekhg5 coding downstream 127880 18540263 ~ 18565527 (-)
irx7 LOC108275649,LOC107751843 coding downstream 191596 18500181 ~ 18501811 (-)
LOC113530281 LOC108275500,LOC106567306 coding downstream 215608 18440875 ~ 18477799 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding upstream 415107 19119031 ~ 19127613 (-)
trnak-uuu_17 NA coding upstream 424540 19128464 ~ 19128536 (-)
LOC113530333 faim2 coding upstream 426184 19130108 ~ 19142474 (-)
fitm2 fitm2 coding upstream 439813 19143737 ~ 19148012 (-)
ada ada coding upstream 527922 19231846 ~ 19251695 (-)
G257322 NA non-coding downstream 40092 18653093 ~ 18653315 (-)
G256929 NA non-coding downstream 343715 18348843 ~ 18349692 (-)
G256689 NA non-coding downstream 902500 17790641 ~ 17790907 (-)
G256623 NA non-coding downstream 959358 17733806 ~ 17734049 (-)
G256622 NA non-coding downstream 960944 17732097 ~ 17732463 (-)
LOC113530357 NA non-coding upstream 105139 18809063 ~ 18863122 (-)
G257458 NA non-coding upstream 230973 18934897 ~ 18936391 (-)
G257471 NA non-coding upstream 235558 18939482 ~ 18939782 (-)
LOC117599228 NA non-coding upstream 413925 19117849 ~ 19119020 (-)
LOC113530339 r3hdml non-coding upstream 454367 19158291 ~ 19178092 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 162155 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 392720 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 780130 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 1822243 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 1854758 16787801 ~ 16838649 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 232653 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 666763 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 727526 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 779169 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 1397075 20100999 ~ 20109212 (-)

Expression


Co-expression Network