fam3a (fam3a,LOC102798212,LOC106567024)


Basic Information

Item Value
gene id fam3a
gene name fam3a,LOC102798212,LOC106567024
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18703452 ~ 18721160 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920789.2
AGAGATTGTCACGTGGTCTGTGACGTATTCCTCCTGCAACACAACCCGGAAATAAAGACGCTCTTGCGCTGGTGCAGAGTAATATTTGCTTATCTCTGTTTGCTTTAGGATCCGCTGCTATATCCTGAACATTCTGCGCTGATTTGAGGATCAGTGGATGGGAAGTGCTCAGTGGATGAGGCGTTTATGAGCAGTGCGGGATTAGGAGATGTTTTGATCATGTGCGCTGTAGTGCGGGTTCGCGGCACAGGATTCAGTCACGCGCGCACTTCACTCTGTCCCCGCTGCTTTCTGGAAACTTCctgactgaaacacaaacaaCGAAGACACTCAAGACATCAACGGAGGCTCATCTTCTATACCATTCAGGATCTGCAGTCCGGATATCATGAGGCTGGCAGGACCACTGCGTGCAGTCGGCGTCGTGTTCCTTGTAGGCTTGACTTGGCTTCTGGCAAGTTCCATACTAGGAGGAGATGGAGGTTCTGTCATGAAAATGTTCTTTACTGGTACACAAGAGGAGCCCACTCCAGAACCAGGGCCACGCAGGTACAAGTGCGGTCTCTCGGCCCCATGTCCTCCTAAACACCTCGCTTTCCGTTTGGTGTCGGGAGCTGCAAATGTTATTGGACCCAAGATCTGTTTGGAGGATAAAATGCTTATCAGCAGTGTGAAGGACAATGTTGGCAGAGGACTTAACATTGCCTTAGTAAATGGGGTCACTGGAGAGCTTTTGGAAACAAAATCATTTGACATGTGGGAAGGAGATGTTTCTAATTTGCTGAAGTTTCTGCGACCTCTCCATGAAGGAACTCTAGTGTTTGTGGCGTCCTTTGACGATCCAGCCACCAAGTTGAATGATGAGGCACGGCGGCTGTTTGAGGAGCTGGGCAGCACCGCAATAAAAGAGCTCGGATTTAGGGACAGCTGGGTGTTTGTGGGAGCCAAAGGAATAGAAAACAAAAGCCCATTTGAGCAGcGAATGAAGAACAACAAAAGTAGTAATAAATATGAGGGCTGGCCGGAGTCTTTGGAGATGGATGGCTGCATTCCTTTACGCGCCCCACAAGAGAGCTAATCTCTCAATCGAACAAGCATGAAATAAGGAAATGCACAAACAACTTCAACACTGACTAAACTGGTTCAGTCAGGCACATGGTGGACTCTTGGATCACACTACCTAATcagtttctttttaaagaatttttaaagaattcCAGTTGGTAATACAAAATCTTTCTTGTAAAGGTGAGCCTCAACACAAATATAACACTTTTAGGACAGTAAATGTCAGTCATGACTTTACCTGTCTGGTGTATACTAGCCATAAACActcacatttttatatgtaaagcTTTAATTTATCTTGTCACTAATCCATGCATCCATTGACCAATGGCCCATCATGCTTCATGGGTAAACTTATAATATCTAGAAACATTCCTAGTAACTGGTGTTAGGGAGTGAAAGTGTTACACAGTAAGGAACGCCTGTCtttgttgtatatttttaatacatttttgccATAATTAAATGAAGCGTGGCATGTAGTTGCTGTCAAAGTCATAGCAAGCTTAGGATTAacattttggttgttttttttttctaattttatagTAAACAAATGAAGATGACTGCTGTATTTTAAGTAGAAttgttcaaataaaatatgaatgtgatattATATGAACTCAAAAAGCATCATGctgaaataagatttttttttttttttcggtcaTGTTCCAAGCATCCTAGGTGGTGGAGTTATCATACTGTGGCCACTAGAGGGTGACACAGATTCAAGAATGTGTATGAAATCTAACTATGCTGTCCAATaaactactgtatatacttATACAGGTGGCCATA
>XM_026920790.2
TATACAGACAAGCGAAGAGCCAATCCTAACGCAAAGGTGGGATTTCTCTGAAGGAATTCAGGAGGCTCATCTTCTATACCATTCAGGATCTGCAGTCCGGATATCATGAGGCTGGCAGGACCACTGCGTGCAGTCGGCGTCGTGTTCCTTGTAGGCTTGACTTGGCTTCTGGCAAGTTCCATACTAGGAGGAGATGGAGGTTCTGTCATGAAAATGTTCTTTACTGGTACACAAGAGGAGCCCACTCCAGAACCAGGGCCACGCAGGTACAAGTGCGGTCTCTCGGCCCCATGTCCTCCTAAACACCTCGCTTTCCGTTTGGTGTCGGGAGCTGCAAATGTTATTGGACCCAAGATCTGTTTGGAGGATAAAATGCTTATCAGCAGTGTGAAGGACAATGTTGGCAGAGGACTTAACATTGCCTTAGTAAATGGGGTCACTGGAGAGCTTTTGGAAACAAAATCATTTGACATGTGGGAAGGAGATGTTTCTAATTTGCTGAAGTTTCTGCGACCTCTCCATGAAGGAACTCTAGTGTTTGTGGCGTCCTTTGACGATCCAGCCACCAAGTTGAATGATGAGGCACGGCGGCTGTTTGAGGAGCTGGGCAGCACCGCAATAAAAGAGCTCGGATTTAGGGACAGCTGGGTGTTTGTGGGAGCCAAAGGAATAGAAAACAAAAGCCCATTTGAGCAGcGAATGAAGAACAACAAAAGTAGTAATAAATATGAGGGCTGGCCGGAGTCTTTGGAGATGGATGGCTGCATTCCTTTACGCGCCCCACAAGAGAGCTAA

Function

symbol description
fam3a Predicted to act upstream of or within negative regulation of gluconeogenesis and regulation of lipid biosynthetic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human FAM3A (FAM3 metabolism regulating signaling molecule A).

NR:

description
PREDICTED: protein FAM3A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920789.2 True 1869 mRNA 0.43 10 18706493 18721160
XM_026920790.2 False 795 mRNA 0.49 10 18703452 18720369

Neighbor

gene id symbol gene type direction distance location
LOC113530736 ssr4,ssrd,LOC108275523,LOC108425558,LOC106567025 coding upstream 51623 18646708 ~ 18651829 (+)
arhgap4a LOC108276165 coding upstream 58687 18623471 ~ 18644765 (+)
casp9 casp9 coding upstream 83397 18611153 ~ 18620055 (+)
cd40 NA coding upstream 206050 18490481 ~ 18497402 (+)
pfdn4 pfdn4,LOC107697845,LOC107758785,LOC106572636 coding upstream 351979 18346775 ~ 18351473 (+)
si:dkey-151g10.3 LOC108276398,LOC108425563,LOC107737519,LOC107673054 coding downstream 4117 18725277 ~ 18779657 (+)
erbb3b erbb3 coding downstream 65606 18786766 ~ 18826105 (+)
pa2g4b pa2g4b,LOC108276026,LOC108425565,LOC107737517,LOC107593906,LOC107668344,LOC107591063,LOC107716155,LOC107673109 coding downstream 107903 18829063 ~ 18836940 (+)
esyt1a LOC108276191 coding downstream 129323 18850483 ~ 18877346 (+)
LOC117599226 LOC108275925 coding downstream 248834 18969994 ~ 18971248 (+)
G257068 NA non-coding upstream 82147 18620249 ~ 18621305 (+)
G256899 bcas1 non-coding upstream 375196 18322069 ~ 18328256 (+)
G256851 zfp64 non-coding upstream 623120 18078167 ~ 18080332 (+)
G256852 NA non-coding upstream 625640 18076948 ~ 18077812 (+)
G256772 NA non-coding upstream 758353 17944895 ~ 17945099 (+)
LOC113530356 NA non-coding downstream 120593 18841753 ~ 18846347 (+)
G257127 NA non-coding downstream 170729 18891889 ~ 18936842 (+)
G257196 NA non-coding downstream 344694 19065854 ~ 19066133 (+)
G257199 NA non-coding downstream 396717 19117877 ~ 19118533 (+)
G257235 NA non-coding downstream 511843 19233003 ~ 19235261 (+)
LOC113530386 slc26a9 other upstream 1515075 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 1578501 17071136 ~ 17124951 (+)
G256046 NA other upstream 2195072 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 2307207 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 2376838 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 158321 18879481 ~ 18934319 (+)
pkig NA other downstream 477266 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 757142 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 904369 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1669649 20390809 ~ 20398714 (+)

Expression


Co-expression Network