zgc:171775 (LOC108276094,LOC108429287,LOC103042110,LOC107705698,LOC107666627,LOC107559857,LOC107551519,LOC107727002)


Basic Information

Item Value
gene id zgc:171775
gene name LOC108276094,LOC108429287,LOC103042110,LOC107705698,LOC107666627,LOC107559857,LOC107551519,LOC107727002
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14741169 ~ 14748595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920808.2
TTCTGCGCCGCTAACCTGAGAGCTCAAGAGCCTCCGACACAGCGCTGAGCTCGTGGGCTTGTCGGGAGTACACTGccttattgttattaataactaattaattaattaattaatcaatttcaTGGCTTCTCCTCTGAGAGCGGGTTTCCACCGACTGGAGGTCCAAAAAACCTCCTGGGAAATTCCGGACCGGTACACAACCCTAAATCCCGTCGGTTCCGGGGCATATGGAACAGTATGCTCTGCTATTGACCAGAAAACAAAGGAGAAAGTGGCCATTAAAAAGCTGTACAGACCGTTCCAGTCTCTGATCCACGCAAAGCGAGCCTACCGAGAACTCCGACTGTTACGCCACATCCAACATGAAAATGTGATCTGCCTTCTGGATGTTTTCACTCCTGACTCCTCACTGGACAAATTCCAAACTTTCTACTTGGTAATGCCATTTGTGGCTCAGGATCTTGGCCACATAATGAAGAAGGGGAGGCTCACTGAAAAAGTCATTGTCTACTTGTTCTACCAGTTACTCAGAGGGCTAAAGTACATACATTCTGCTGGGATCATTCATCGGGATCTGAAGCCAAGCAACCTTGCTGTTGATGAAAACTGTGAGTTAAAGATATTGGACTTTGGATTGGCGAGACATGCAGAGATGGAGATGACTGGCTATGTTGTGACACGGTGGTACAGAGCCCCAGAAATCATTTTCAACTGGATGCATTATACTCAGACAGTTGACATATGGTCTGCTGGTTGCATCCTGGCTGAGATGATCACCGGGGAGGTGCTTTTCCCAGGAAATGACAGTATGGACCAGCTGAACATGATCCTGCATCTGACGGGAACACCGCACTCATCACTGGTGCAGAAAATGCAGAGCAAAGATGCAAGGTCATATGTACAGTCTCTCCCAATCCAGAAAAAGAAGGTTCTCAGAGATGTCTTCCCATCCATGGATTCCAAtgCTGTGAATCTGCTTGAGAAGACTCTGATGCTGGACCCAGAAGCCAGACTGACAGCTAAAGATGGACTGTCTCACCCCTACCTCTCGGAGTTTCATGACCCAGAAAGCGAACCCGAGTCTCCCGCTTATGACGACTCATTTGAGAGCCTGGAGCTGGCTATTAGCGAGTGGAagagtCTTATACACATGGAGAtaatgacctttgaccctgacAATCCTAGACAGACTGCAACATAACACTTCATCAGACCTGGGAATATGTTGCAATAAAAAGTTACTAACGATTAAGCTACATGCCTGTATTATCCAACACACCAGCAGTGAGGGATAGTGAGTGTATTTAAGCAGCCATCTTGAAGTTCTTCGGTTTCCGTCTCTGTACACTGTAATATTGCGGTACATGAATACCCATTTTTACTCTGTTTTCCAatatttgtagttacatttaaaaaaa
>XM_026920809.2
ATGAATCCGCACTTGCATGCACAGCTGCTGCTATACAATCCCTGACACACACCTCATGAAGGACACCTGTGTAGGAAAGAGGGAGTGGTTTGGGATTGTAAATGAAACCACGTGACCATGCTAAGAGCGGGTTTCCACCGACTGGAGGTCCAAAAAACCTCCTGGGAAATTCCGGACCGGTACACAACCCTAAATCCCGTCGGTTCCGGGGCATATGGAACAGTATGCTCTGCTATTGACCAGAAAACAAAGGAGAAAGTGGCCATTAAAAAGCTGTACAGACCGTTCCAGTCTCTGATCCACGCAAAGCGAGCCTACCGAGAACTCCGACTGTTACGCCACATCCAACATGAAAATGTGATCTGCCTTCTGGATGTTTTCACTCCTGACTCCTCACTGGACAAATTCCAAACTTTCTACTTGGTAATGCCATTTGTGGCTCAGGATCTTGGCCACATAATGAAGAAGGGGAGGCTCACTGAAAAAGTCATTGTCTACTTGTTCTACCAGTTACTCAGAGGGCTAAAGTACATACATTCTGCTGGGATCATTCATCGGGATCTGAAGCCAAGCAACCTTGCTGTTGATGAAAACTGTGAGTTAAAGATATTGGACTTTGGATTGGCGAGACATGCAGAGATGGAGATGACTGGCTATGTTGTGACACGGTGGTACAGAGCCCCAGAAATCATTTTCAACTGGATGCATTATACTCAGACAGTTGACATATGGTCTGCTGGTTGCATCCTGGCTGAGATGATCACCGGGGAGGTGCTTTTCCCAGGAAATGACAGTATGGACCAGCTGAACATGATCCTGCATCTGACGGGAACACCGCACTCATCACTGGTGCAGAAAATGCAGAGCAAAGATGCAAGGTCATATGTACAGTCTCTCCCAATCCAGAAAAAGAAGGTTCTCAGAGATGTCTTCCCATCCATGGATTCCAAtgCTGTGAATCTGCTTGAGAAGACTCTGATGCTGGACCCAGAAGCCAGACTGACAGCTAAAGATGGACTGTCTCACCCCTACCTCTCGGAGTTTCATGACCCAGAAAGCGAACCCGAGTCTCCCGCTTATGACGACTCATTTGAGAGCCTGGAGCTGGCTATTAGCGAGTGGAagagtCTTATACACATGGAGAtaatgacctttgaccctgacAATCCTAGACAGACTGCAACATAACACTTCATCAGACCTGGGAATATGTTGCAATAAAAAGTTACTAACGATTAAGCTACATGCCTGTATTATCCAACACACCAGCAGTGAGGGATAGTGAGTGTATTTAAGCAGCCATCTTGAAGTTCTTCGGTTTCCGTCTCTGTACACTGTAATATTGCGGTACATGAATACCCATTTTTACTCTGTTTTCCAatatttgtagttacatttaaaaaaa

Function

NR:

description
PREDICTED: mitogen-activated protein kinase 14A-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920808.2 True 1418 mRNA 0.46 12 14741169 14748450
XM_026920809.2 False 1405 mRNA 0.46 13 14741169 14748595

Neighbor

gene id symbol gene type direction distance location
LOC113530599 krt18,LOC107681396,LOC107727028,LOC107551541,LOC107666358,LOC107568050 coding downstream 67203 14669816 ~ 14673966 (-)
eif4ba eif4b,eif4ba,LOC107666323 coding downstream 94864 14624061 ~ 14646305 (-)
tns2a tns2,LOC107681375 coding downstream 126514 14573892 ~ 14614655 (-)
ppp4r2a ppp4r2,LOC108276138,LOC107551500 coding downstream 257062 14475675 ~ 14484107 (-)
chl1a LOC108276120 coding downstream 418867 14278094 ~ 14322302 (-)
slc16a7 LOC108276076,LOC108429289 coding upstream 91693 14840288 ~ 14847015 (-)
adrm1 adrm1,LOC106534082,LOC103354471,LOC105894265,LOC107727009,LOC108276396 coding upstream 224421 14973016 ~ 14979288 (-)
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding upstream 232751 14981346 ~ 15002677 (-)
acss2 acss2,LOC108438110,LOC107666475 coding upstream 345202 15093797 ~ 15116626 (-)
gss gss,LOC107594436 coding upstream 376752 15125347 ~ 15140979 (-)
G255020 NA non-coding downstream 208581 14530825 ~ 14532588 (-)
G254567 NA non-coding downstream 1040764 13700009 ~ 13700405 (-)
G254600 NA non-coding downstream 1044549 13692797 ~ 13696620 (-)
G254599 NA non-coding downstream 1075696 13664893 ~ 13665473 (-)
G254587 NA non-coding downstream 1126506 13614428 ~ 13614663 (-)
G255306 NA non-coding upstream 127049 14875644 ~ 14878506 (-)
G255403 NA non-coding upstream 431791 15180386 ~ 15180640 (-)
G255385 NA non-coding upstream 433562 15182157 ~ 15227960 (-)
G255435 NA non-coding upstream 583531 15332126 ~ 15332451 (-)
G255506 NA non-coding upstream 705538 15454133 ~ 15454354 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 36899 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 590588 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 1457284 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 1806861 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 2573374 12155728 ~ 12167795 (-)
LOC113530775 NA other upstream 509890 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 909741 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 1899228 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 2039206 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 2104333 16852928 ~ 16871164 (-)

Expression


Co-expression Network