zbtb17 (zbtb17)


Basic Information

Item Value
gene id zbtb17
gene name zbtb17
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 8471131 ~ 8482151 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920817.2
AGCAGAAGATGGCGGAGCGTCGAGTCTGAGCAACGACATCGATCGCCGGATAACTCGATTGGACGTAATCGCTCGAGTGTGTCTAAATTGATCACATACGTCCAGCTGTTTGGGTAAAACCGCTGGCGATAATATGAACATTTAAACGGAGTCACGATGAGCCGATTTCGGGTGTTTCAGCGCGTCGTTCCTGAAGCAAAACAGAGCAGAAGCTGAGGACACTTTCCAACCGTCTCCTGTCACCTCCATCTTGTTTCACAGCTCCAGCCGCGGCCAGGCACGCTGAGTTAATCCCGGAGCCCGAGAACAGAGGACTCCTAATCAATCCGCAACATCGTCAACCTGCTAGCGGAGGGATAAAGTAGGCCTGTGTGGCGGAAGTGTCTGATTATCCACAGCAAGAGCCTGACCTAGCCCAGGTGGCAGTGATGGACTTCCCATGGCACAGTGGGAAAGTTTTAGAGCAGCTGAACCATCAGCGTCAGCAGGATCTCCTGTGTGACTGCACGTTTGTGGTGGATGGAGTGGACTTCAAAGCCCACAAAGCCGTACTGGCAGCATGCAGCACCTACTTCCACGCTCTCTTTCTGGACCAGAAGGATGTTGTGCATTTGGATATCAGTAATGCTGCAGGCCTTGGACAAATCCTTGAATTTATGTACACAGCTAAGCTGACGCTGAACCCTCAGAATGTCGAGGATGTGCTGGCTGTAGCCACTTTTCTTCAGATGCAAGAAATTGTCAATGCTTGCGCTGCTTATAAGTCTCTCACAGGACCTCCAGTGTTAAACAATGCCATATCAGGTCCAACTGAGCAACATCAGAAGCTGGCTAAGGAAGACGAAGATGCTTCTATGGAGCAACAGGACAGTCACGTTTCGGCTCAGAGCGGCGTTCCTGAGGCAGATGAAGCTCCCTCTTCATCAGAGACCTCTGAAGAGCAGCAGGCGAGGTGTAGCACTACTGAAAGACAAAGCGCAGGAACTCAAAGTGCAGGAGTTAGGGTAGGAAGACCACACAAGCTCAGCCAGTACGCCAAGctaaaggaggaagaggagagcaCAACAAAGGATCTCATGGAGTATCAGGATGACCTGTCTGATGCTGATTACACACCCAAAATATCACAAAGAGCTGCGACTAGGAGGTCTTGCGTAAGAACACGGAGAAGCAAATCAAAATTTATCACTCACCATGTGTCCACGCCAGATGATGGTAGTGAAGGAAGTTTGTCAAAAGTCACTACTGAAGAAAATATAAGAGAAGAACTGGAACAGGAAGAGGAGgctgatgaagaggaggagcatACAGAGCAAGATGATGGGGAGATGGATGTAGATGATGCAGAAGCAGGAGCAACAGACGAAGGAGAGGGAAAGTGTCTGAGGTCTGGGGTCATTGCTGAACGCACTGAGTCCAGATCGTATGGCTCCGTCACACACAAATGTGAGGACTGTGGAAAGAAGTTTACCCACACTGGGAATTTTAAACGCCACATGCGCATCCACACAGGCGAGAAGCCCTTCAGCTGCAGGGACTGCAACAAGGCCTTCTCTGACCCAGCCGCCTGCAAAGCTCATGAAAAAACCCACAGCCCTGTAAAGCCATACTGCTGTTCCACATGCGGGAAGAGCTACCGGCAGATCAGCCTGCTGAACCTGCACAGGAAGCGGCACACAGGCGAGGCGCGCTACAGCTGCGACGAGTGCGGCAAACTCTTCACCACATCAGGTAACCTGAAGCGCCACCAGCTGGTGCACAGCGGCAAGAAGCCGTACCACTGTGAGTACTGCGAGCGCGCTTTCTCCGACCCCACCGCCAAAATGCGCCACCTGGAGATCCATGACACTGACAAGGGCCACAAATGCCCACAGTGCGACAAGAAATTCAATCAGATAGGAAACTTGAAAGCTCACATGAAGATCCACATCGCAGACGGACCTCTGAAGTGTAAAGAGTGTGGGAAGCAGTTCACCACATCAGGGAACCTGAAGAGGCACCTGCGTGTTCACAGTGGAGAGAAACCCTTTGTGTGTATGCACTGTCAGAGAGCGTTCGCTGATCCAGGTGCACTGCAGAGACACGTGCGCATTCACACAGGGGAAAAGCCATGTCTTTGTCTGATCTGTGGAAAAGGCTTCACACAGGCCAGTTCACTGATTGCTCATGTCCGACAACACactggagagaagccgtatGTATGTGACCGCTGTGGCAAAagGTTTGTGCAGTCCAGCCAACTGGCCAATCACATCCGCCATCATGACAACATACGACCCCACAAATGCCAAACCTGCAACAAAGCGTTTGTCAATGTCGGAGACCTCTCTAAACATATCATCATTCATACAGGTGAGAAACCTTATCTTTGTGACAAGTGTGGACGTGGGTTTAACCGTGTGGACAACCTCCGCTCCCACGTTAAAACTGTTCACCAGGGCAAAGCGGGCATGAAGAGACTGGTAGTGACAGAGGAAGACAACGGGGAGGACAAGCTGCTCCCTGCAACTGCCTCTGTGTCTGACCTTGATGAGAATGAAGTCAATATTGTTACAGTCACCACAGACGACATTGTGACTTTGGCTACAGAAGCATTGGCAGCCAACACTGTCGCACAGCTGACTGTGGTGCCTGTTGCAACATCTGTATCTGCGGATGAAACAGAGGCTCTGAAAGCTGAGATCACAAAGGCAGTGGAGAAAGTGCAGGAGGCTGATCCCAACACACAGATCTTATACGCATGTGACTCCTGTGGGGAGAAGTTTCTGGACGCTAGTTCTCTGGCCCAGCACGTGCGCATCCACACGGCCCAGGCTCTCGTCATGTTCCAGGCTGACTCGGACTTCTACCAGCAGTACGAGGCAGCGGACGGCACTTGGCAGACCACCGAGCAGGTCATTCAGGGAGAAGAGCTCCTCTtcaggagggagggagaggaagaggctAACGATGACACCCGGGGCGAGGAGGAGCATACTGAACCTCAgactgaggaggaggaagaggaggcggAGTCTCAGACTGAAACTACAGTAGAGGATGTACAGATTTGTGAAAGTCAGACTCAGTGATGCTATACTGAGCAAAGGAAAGAATTTTGAAAATCTCAGAGACATCAGCATAGTTGAGGAATATATTAGATATCACTTGAAATGTGTCAATGTTACTATTTCAAGTCGAATGCTACATTTTGGGCTTGTTTTTACAAATTGGTTGCGTAGCACAAGCACACAATGTCATGCTTAGGCTGTAAAGAATTCTTTTAAAAGAAGTCGTTTGTTTTCGGACATGCTAATTCTAGCTCAGTGCACATTTCTGTCTATTATGCTGTATTTTTCTGATACTTATCACACAACACAGAAGTGTCTATCAGCTACACCTCTGACTTTATATGGTTCCTTTGCCAGCATCTACATTCTCAATCATGCACTAATATTGAgtattaaatgttatatacaCTGTGCATAACATTGTAACCTGTGTTCTATCACAGTCTTATATGTTTCATAAAAAACATCAATTATCAAAACTGAgcactttcattcattctttgaatttctttttcttcataattACTCAGGATTACTTTCATTTAGCACATCTTATACAATTTAAAccataacatttattaaatgcaCAAAGAGCTATATAAAATGAttagaaaatgtataaaagattTGTATGATGATGCAAGCAGCTACTGGGTAAAGAAGCAGGTGCATACTAAGTAATGCAGGGCTCATGAACTAATTTA

Function

symbol description
zbtb17 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of T cell migration. Orthologous to human ZBTB17 (zinc finger and BTB domain containing 17).

NR:

description
zinc finger and BTB domain-containing protein 17

GO: NA

KEGG:

id description
K10500 ZBTB17, MIZ1; zinc finger and BTB domain-containing protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920817.2 True 3754 mRNA 0.48 15 8471131 8482151

Neighbor

gene id symbol gene type direction distance location
hspb7 hspb7,LOC107591086,LOC107716085,LOC107578967 coding upstream 1907 8466737 ~ 8469224 (+)
epha2b epha2,epha2b,LOC107591085,LOC107737541,LOC107687430,LOC107673100,LOC107716125,LOC107593930 coding upstream 48161 8402069 ~ 8422970 (+)
tmem82 tmem82 coding upstream 121178 8345216 ~ 8349953 (+)
tmem240a tmem240a,tmem240,LOC108275582,LOC107593924,LOC107687438,LOC107673083,LOC105898995 coding upstream 164834 8293584 ~ 8306297 (+)
vwa1 LOC108276195 coding upstream 184373 8278091 ~ 8286758 (+)
ddost ddost,LOC107673085,LOC107687429 coding downstream 1517 8483668 ~ 8490807 (+)
plekhm2 plekhm2 coding downstream 11431 8493582 ~ 8509176 (+)
ano11 ano7l1,LOC107737547,LOC107716119,LOC107591089,LOC107593934 coding downstream 30989 8513140 ~ 8531671 (+)
arhgef19 arhgef19,LOC103150465,LOC106926263 coding downstream 50981 8533132 ~ 8552393 (+)
her9 hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146 coding downstream 475243 8957394 ~ 8959195 (+)
G251400 NA non-coding upstream 9322 8403341 ~ 8461809 (+)
G251381 NA non-coding upstream 164216 8306461 ~ 8306915 (+)
G251146 LOC108276122,LOC108433859 non-coding upstream 369014 8101286 ~ 8102117 (+)
G251139 NA non-coding upstream 389696 8080545 ~ 8081435 (+)
LOC113530489 NA non-coding upstream 725299 7730002 ~ 7745832 (+)
G251417 NA non-coding downstream 837 8482988 ~ 8483221 (+)
G251418 NA non-coding downstream 1141 8483292 ~ 8483557 (+)
G251424 NA non-coding downstream 27283 8509434 ~ 8509647 (+)
LOC117599296 NA non-coding downstream 115586 8597737 ~ 8600118 (+)
G251463 NA non-coding downstream 147784 8629935 ~ 8633785 (+)
fam131c fam131c other upstream 25526 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 88948 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 133065 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 214983 8253674 ~ 8256148 (+)
micos10 minos1,LOC107738265,LOC107590465,LOC107558746,LOC107664137 other upstream 218879 8248320 ~ 8252252 (+)
LOC113530359 rnf223 other downstream 138831 8620982 ~ 8627025 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 1788652 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 2290520 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 2361460 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 2389878 10872029 ~ 10913596 (+)

Expression


Co-expression Network