sars1 (sars,LOC107697960,LOC107671868)


Basic Information

Item Value
gene id sars1
gene name sars,LOC107697960,LOC107671868
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16574026 ~ 16587748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920856.2
TAAGTGAACTACATAGGGTATGAAATAATGGCTCCTTcgccctatatagtgcactaaaTGTCTAAAAGTAAGTCATTTGTGAATCAGCCCGTGACGGACAGAACGGAACACTGAATCACTCCCCATTACTGCGAAGCCCTGTTCCAATTGTGTGCACGGTTTTCCTAATTTCGCCTTTATACAAGAGCAGTGCGGCATCATGGTTCTTGATCTAGACCTTTTTCGGACAGACAAAGGCGGCGATCCAGAAATTGTGAGAGAGACGCAACGAAAAAGGTTTAAAGATGTGTCCTTGGTGGATAAACTCGTTCAAGCAGATAAGGAATGGAGGAAGTGTCGCTTCATTGCTGACAACCTCAACAAGGCAAAGAATTTATGCAGCAAATCTGTTGGTGAGAAAATGAAGAAGAAGGAGCCAGTTGGAGATGATGAAACCCTCCCAGAGGAGGTCCAGAACCTGGAGACACTCACAGCAGACATATTATCAACACTGACTGTAACTCAGATTAAAAAGGTTCGAATGTTGGTGGATGAAGCAATTCAAAAAACAGACAATGAGAGGCTGAGGCTGGAGATGGAGCGCTTTGAATCCCTGAGAGAGATTGGCAACCTCCTACACCCTTCTGTTCCCATTAGCAATGATGAGGATGCTGATAATAAAGTTGAGCGCACCTGGGGTGACTGCACAGTGCAGAAGAAGTACTCTCACGTGGATCTGGTTGTCATGGTGGATGGATATGAAGGAGAGAAAGGTGCCATCATTGCGGGAAGCAGAGGATATTTCTTGAAGGGACCTCTAGTTTTCCTGGAGCAGGCTTTGATTAACTACGCCCTGCATATCCTTTACAGCAGGAATTACACTCTCCTCTATACGCCATTCTTCATGCGGAAAGAGGTCATGCAAGAGGTTGCTCAGCTCAGCCAGTTTGATGAGGAACTATataagGTTATTGGGAAGGGCAGTGAGCATTCTGATGATACATCAGTGGATGAGAAGTATTTGATTGCCACTTCAGAACAGCCCATAGCAGCCTTCTTGAGAGATGAGTGGCTCAAGCCCGAGGACCTGCCCATCCGCtttgctggcatttctacctgcTTCAGACAGGAAGTGGGGTCCCATGGCCGAGACACCCGTGGCATCTTTAGGGTTCACCAGTTTGAAAAGATTGAACAATTTGTGTATGCCTCACCTCACAACAACAAGTCATGGGAGATGTTTGATGAAATGATCACAACTGCAGAAGAATTCTACCAGTCGCTAGGATTACCCTACCGCATTGTTAACATTGTCTCTGGTTCTTTGAACCATGCAGCCAGTAAGAAGCTGGACTTAGAGGCTTGGTTCCCAGGTTCTCAGGCTTTTAGGGAGCTGGTGTCCTGCTCCAATTGTACGGACTATCAAGCTCGCCGCTTACGTATACGCTATGGCCAGACGAAGAAGATGATGGACAAGGCTGAGTTTGTGCACATGCTCAATGCAACCATGTGTGCTACTACCCGTGTAATATGTGCTATTCTGGAAAACTACCAGACTGCAGAGGGCATAATCATTCCAGAGCCACTCAGGGTGTTCATGCCTCCAGACTTAACAGAAATAATCAAGTTTGTGAAGGCAGCTCCTATTGACCAAGAGTTTTCAAAGAAGCACAAGAAACAACAagagggaggaaagaaaaagaagcagcaAGCCAATGCCACTGACTTGCAAAACAAAGTGGAGAACATGTCAGTGAACGACTCTTAAAAACTTCTGTCCTGCAGCTGTGGCTATTCATTACTGGTCCCTTCTAACTTCTATTTCATACCATTAGtctattataatatataatttcatgccacctctttttattttctaatcatGCATGTAAATCTGTCAACATTATGGTTAGTTTCCTTGATGTGAAACATGGCTTCTTCACTGGTGACCTGTTCTAGCTGTCAACAGTGACATGTACAGAACTTGCTTGAGATATCTTCAAAGGGATATGAGTATGGTGGCACatccaaataaatgaatatgaaacaaTG

Function

symbol description
sars Predicted to enable several functions, including nucleic acid binding activity; protein homodimerization activity; and serine-tRNA ligase activity. Predicted to be involved in negative regulation of angiogenesis; negative regulation of macromolecule metabolic process; and seryl-tRNA aminoacylation. Predicted to act upstream of or within translation. Located in mitochondrion. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; egg cylinder; and genitourinary system. Human ortholog(s) of this gene implicated in intellectual disability. Orthologous to human SARS1 (seryl-tRNA synthetase 1).

NR:

description
PREDICTED: serine--tRNA ligase, cytoplasmic

GO:

id name namespace
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920856.2 True 2031 mRNA 0.44 12 16574026 16587748

Neighbor

gene id symbol gene type direction distance location
uckl1b uckl1,uckl1b,LOC107697006,LOC107723126,LOC108411658,LOC107705741,LOC107673346,LOC103372048 coding downstream 921421 15608285 ~ 15652605 (-)
zbtb46 zbtb46,zbtb24,LOC106676336 coding downstream 1012912 15455518 ~ 15561114 (-)
LOC113530990 NA coding downstream 1086167 15487757 ~ 15487859 (-)
lmod3 lmod3 coding downstream 1122676 15412170 ~ 15451350 (-)
birc7 LOC108275549 coding downstream 1216169 15339996 ~ 15357857 (-)
si:ch211-207e14.4 LOC108276234 coding upstream 53712 16641460 ~ 16647701 (-)
cs cs,LOC107707042,LOC107671863,LOC107697968 coding upstream 120442 16708190 ~ 16762693 (-)
rapgef3 LOC108275659,LOC108425525 coding upstream 537271 17125019 ~ 17171019 (-)
LOC113530577 NA coding upstream 621137 17208885 ~ 17226734 (-)
LOC113530575 NA coding upstream 1142964 17730712 ~ 17735744 (-)
LOC113530939 NA non-coding downstream 8553 16560724 ~ 16565473 (-)
G256047 NA non-coding downstream 65614 16507990 ~ 16508412 (-)
G256043 NA non-coding downstream 69859 16503938 ~ 16504167 (-)
G256040 NA non-coding downstream 76337 16497478 ~ 16497689 (-)
G256004 NA non-coding downstream 195429 16367155 ~ 16378597 (-)
G256163 NA non-coding upstream 36718 16624466 ~ 16624772 (-)
G256164 NA non-coding upstream 38494 16626242 ~ 16626617 (-)
G256166 NA non-coding upstream 41233 16628981 ~ 16629517 (-)
G256160 NA non-coding upstream 43644 16631392 ~ 16632448 (-)
G256162 NA non-coding upstream 49140 16636888 ~ 16637725 (-)
znf512b znf512b,si:dkey-256k13.2 other downstream 753785 15658336 ~ 15820241 (-)
LOC113530775 NA other downstream 1256661 15258485 ~ 15317365 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 1869756 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 2423445 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 3290141 13251140 ~ 13283885 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 60075 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 200053 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 265180 16852928 ~ 16871164 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 1296495 17884243 ~ 17913277 (-)
znf217 znf217 other upstream 1697738 18285486 ~ 18300687 (-)

Expression


Co-expression Network