naca (naca,LOC106571941)


Basic Information

Item Value
gene id naca
gene name naca,LOC106571941
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11892151 ~ 11900462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920873.2
AAGGtcaggatctctctctctcagccatcTTGGACCCCGAGCTCGAACCTAcCAACAATGCCAGGTGAAGCCACAGAAACTGTCCCAGTGACGGAGCAGGAAATGCAGCAGCCCCAAGTGGAGACGGGGTCCGGCACTGAATCAGACAGTGATGAATCTGTTCCTGAACTGGAGGAGCAGGATTCTGCACAGACACAGACGCAGCAGGCGCAGCTTGCAGCTGCTGCCGAAATTGACGAGGAGCCTGTCAGTAAAGCCAAACAAAGCAGAAGcgaaaagaaagcaagaaagGCAATGTCCAAACTGGGTCTCAGACAAGTGACGGGAGTTACCAGGGTAACCATTCGCAAGTCTAAGAATATTCTGTTTGTCATCACCAAACCAGACGTCTACAAAAGTCCCGCTTCAGACACTTATATTGTCTTCGGAGAGGCTAAGATCGAGGACTTGTCCCAGCAAGCTCAGCTGGCTGCTGCAGAGAAGTTCAAGGTCCAGGGAGAAGCAGCATCAAACATACAAGAAAGCACACAGACGCCTACAGTACACGAGGAAAGCGAAGAGGAAGAGgttGATGAGACCGGAGTAGAGGTTAAGGACATTGAGCTGGTCATGTCTCAAGCCAACGTATCACGGGCAAAGGCTGTTCGCGCACTGAAGAATAACAACAACGACATTGTCAATGCCATTATGGAACTGACGATGTAGGTGGATATCAGAGCAGGGCAGAATGAGATGTTGCTGAATTAATCTACACTATTTGTACAATTTATACCCAAGAGAAATAAAGTTGTGGCTTGATGGCTA
>XM_026920874.2
TTGTTGCTTTACAAGTCTTCTGTCCTAAGCGcCAACAATGCCAGGTGAAGCCACAGAAACTGTCCCAGTGACGGAGCAGGAAATGCAGCAGCCCCAAGTGGAGACGGGGTCCGGCACTGAATCAGACAGTGATGAATCTGTTCCTGAACTGGAGGAGCAGGATTCTGCACAGACACAGACGCAGCAGGCGCAGCTTGCAGCTGCTGCCGAAATTGACGAGGAGCCTGTCAGTAAAGCCAAACAAAGCAGAAGcgaaaagaaagcaagaaagGCAATGTCCAAACTGGGTCTCAGACAAGTGACGGGAGTTACCAGGGTAACCATTCGCAAGTCTAAGAATATTCTGTTTGTCATCACCAAACCAGACGTCTACAAAAGTCCCGCTTCAGACACTTATATTGTCTTCGGAGAGGCTAAGATCGAGGACTTGTCCCAGCAAGCTCAGCTGGCTGCTGCAGAGAAGTTCAAGGTCCAGGGAGAAGCAGCATCAAACATACAAGAAAGCACACAGACGCCTACAGTACACGAGGAAAGCGAAGAGGAAGAGgttGATGAGACCGGAGTAGAGGTTAAGGACATTGAGCTGGTCATGTCTCAAGCCAACGTATCACGGGCAAAGGCTGTTCGCGCACTGAAGAATAACAACAACGACATTGTCAATGCCATTATGGAACTGACGATGTAGGTGGATATCAGAGCAGGGCAGAATGAGATGTTGCTGAATTAATCTACACTATTTGTACAATTTATACCCAAGAGAAATAAAGTTGTGGCTTGATGGCTA
>XM_034312069.1
GCAAGAAGCAGTGACTTCCTGTTGATGTCATTGTGAACCGGAAAAACAATGTTGATGTGAACGTGACGCAAAGGtcaggatctctctctctcagccatcTTGGACCCCGAGCTCGAACCTAcCAACAATGCCAGGTGAAGCCACAGAAACTGTCCCAGTGACGGAGCAGGAAATGCAGCAGCCCCAAGTGGAGACGGctgctgctgcttcagTTCCTGCTGTCTCTCAGCCAAAGACTAAAGGGGCTAAGGCTGGCTCATCTCCACACTCTTCTGCCCCCAAGCCTGTTCCTGTGGGCCGCCGGAAGCGCTCCTCGCTTTCcgcttcttcctcttctcccaCTTCACCCAAATCAGCCTCTGGCCCTCGAGCCACCCCACCTTGTTCTCCACTAGCATCTCCTACAGCTCGCTCCCCAGGTGCAGGGAAACCTGAGACAGTTGTTCCCAAGGTTGTGAAGGCTGGTAAACAAGCAAAACCCAAGaaagcagattttaaaattgCTGAACCTCAGCAGGCAACCCTACCTTCTGCTACACCCTCAGAGGCTAAAACAGCACATGAGTCTTCCCCAACCTCTAACAAGGTGGCTAATATACCAGTGGAGGGTGTAGCTACTGCCTCTGTATGTCCTAAAGCTGCTGGTGTAGCTCCAGTGGAGGCAAAACTAGTAGAAGGTGCAGGCCCTGCAGCTGACTCTCTTCAATGTACCACTGATTCTCCAGTGAAGGCAAAACAGGAGAAGGGTGCAGCAGCTGCTCCAGTGAAAGCTGAAGCACCTGCACTCGCTTCTGATAAAGATGTCCCAGCTCCAGTGGAAGCAAAACCAGAGAAAGTTGAAGCAACTACCTCAGCTTCAGTGGAGGTAAAACCAACAAAAGGTGCAGGCCCTACTGTAGCTTCTCCTAAAGGTACTATTGCTGCTCCAGGAAAGGTAAACCAGGTGAAAGGTGCTGCAAAAGTTGTCCCAGCTCCAGTGGAGGCAAAACCAGTGAAGGGTGAAGTAGTTGCCCCAGCCGCAATTCCAGTTGATGTGATGCTGGTGAAGGGTCCTGCACCAGCCTCAGCTAAAGATGTTGCCCCAGCTCCAGTGAAGACAAAACTACTGAAGGACGAAGCTGCTGCCCCAACTCCAGTTGATGTGCTGCAGGTGAAAAGTGTTGCACCTGCACCAGCCACTTCTAATGTTGCTGTCCCTGCCCCAGTGGGTGCAAAACCATTAGAGGGTGAAGCACCTACTCCAGTATCTCCTAAAACTACTGTAGCTCCTGAGGCTTTTAAAGTAGTTTCCAAGTCAGCTGCCCACGCACCCAAATCATATTCTGAGGTTGTGGCATGTAGCCCACCCAAAGTACCAGAAATCCCGAAGGTTGTTCATGAGACCCCAGTAGCACCTAAGGTGCCAGAAGTCCCAAAGGCTCCTGCAGTTGTTACAGAAACCCCGAAGAGTGCTGAAGTACCCAAAGCTGCTCCTGAATCTCCAAAGGCTCAGCCTGTACCTGCCTTATCTCCAGTGCAAAAAGCAAAGTCAGCTCCAGCTACTGCTTCTAAAGTAAAGGCAGAGGCCCCCAAAAGGAGCCAAGCGTTGCTCCCTCTACTGTTCTGGCAGCAACTCCTGAGTCTTCCATTTCACctctggaggaggaggacgacCTCCCTCCACTTATTCCACCTGAGAAGCCTGCCACAATGCCTGTTTTCCAACCCCAACCTGTGGTCGAGGCTTCACCTAAAGTAGACCCTGTAGTTAAAGCTGTTGTGCCGCCAGCTGGTCCCAAAGCCACTGTTACACCTGCTAAATCTCAGCCTGACCCTACACCAGTAAAAGCCCCATCCAAACCGGAACCAGTAATCAAGA
>XM_034312070.1
CCCCGAGCTCGAACCTAGTAAGTGATTCTGTGTTCAATCTTCTGACATCCAGCATTTATAGACGGGTTTGTTCGGCCAGACCTTATCCCTGTTGTTGCTTTACAAGTCTTCTGTCCTAAGCGcCAACAATGCCAGGTGAAGCCACAGAAACTGTCCCAGTGACGGAGCAGGAAATGCAGCAGCCCCAAGTGGAGACGGctgctgctgcttcagTTCCTGCTGTCTCTCAGCCAAAGACTAAAGGGGCTAAGGCTGGCTCATCTCCACACTCTTCTGCCCCCAAGCCTGTTCCTGTGGGCCGCCGGAAGCGCTCCTCGCTTTCcgcttcttcctcttctcccaCTTCACCCAAATCAGCCTCTGGCCCTCGAGCCACCCCACCTTGTTCTCCACTAGCATCTCCTACAGCTCGCTCCCCAGGTGCAGGGAAACCTGAGACAGTTGTTCCCAAGGTTGTGAAGGCTGGTAAACAAGCAAAACCCAAGaaagcagattttaaaattgCTGAACCTCAGCAGGCAACCCTACCTTCTGCTACACCCTCAGAGGCTAAAACAGCACATGAGTCTTCCCCAACCTCTAACAAGGTGGCTAATATACCAGTGGAGGGTGTAGCTACTGCCTCTGTATGTCCTAAAGCTGCTGGTGTAGCTCCAGTGGAGGCAAAACTAGTAGAAGGTGCAGGCCCTGCAGCTGACTCTCTTCAATGTACCACTGATTCTCCAGTGAAGGCAAAACAGGAGAAGGGTGCAGCAGCTGCTCCAGTGAAAGCTGAAGCACCTGCACTCGCTTCTGATAAAGATGTCCCAGCTCCAGTGGAAGCAAAACCAGAGAAAGTTGAAGCAACTACCTCAGCTTCAGTGGAGGTAAAACCAACAAAAGGTGCAGGCCCTACTGTAGCTTCTCCTAAAGGTACTATTGCTGCTCCAGGAAAGGTAAACCAGGTGAAAGGTGCTGCAAAAGTTGTCCCAGCTCCAGTGGAGGCAAAACCAGTGAAGGGTGAAGTAGTTGCCCCAGCCGCAATTCCAGTTGATGTGATGCTGGTGAAGGGTCCTGCACCAGCCTCAGCTAAAGATGTTGCCCCAGCTCCAGTGAAGACAAAACTACTGAAGGACGAAGCTGCTGCCCCAACTCCAGTTGATGTGCTGCAGGTGAAAAGTGTTGCACCTGCACCAGCCACTTCTAATGTTGCTGTCCCTGCCCCAGTGGGTGCAAAACCATTAGAGGGTGAAGCACCTACTCCAGTATCTCCTAAAACTACTGTAGCTCCTGAGGCTTTTAAAGTAGTTTCCAAGTCAGCTGCCCACGCACCCAAATCATATTCTGAGGTTGTGGCATGTAGCCCACCCAAAGTACCAGAAATCCCGAAGGTTGTTCATGAGACCCCAGTAGCACCTAAGGTGCCAGAAGTCCCAAAGGCTCCTGCAGTTGTTACAGAAACCCCGAAGAGTGCTGAAGTACCCAAAGCTGCTCCTGAATCTCCAAAGGCTCAGCCTGTACCTGCCTTATCTCCAGTGCAAAAAGCAAAGTCAGCTCCAGCTACTGCTTCTAAAGTAAAGGCAGAGGCCCCCAAAAGGAGCCAAGCGTTGCTCCCTCTACTGTTCTGGCAGCAACTCCTGAGTCTTCCATTTCACctctggaggaggaggacgacCTCCCTCCACTTATTCCACCTGAGAAGCCTGCCACAATGCCTGTTTTCCAACCCCAACCTGTGGTCGAGGCTTCACCTAAAGTAGACCCTGTAGTTAAAGCTGTTGTGCCGCCAGCTGGTCCCAAAGCCACTGTTACACCTGCTAAATCTCAGCCTGACCCTACACCAGTAAAAGCCCCATCCAAACCGGAACCAGTAATCAAGA

Function

symbol description
naca Predicted to enable unfolded protein binding activity. Acts upstream of or within definitive hemopoiesis and myofibril assembly. Located in cytoplasm and nucleus. Is expressed in cardiac muscle; hematopoietic system; skeletal muscle; and somite. Orthologous to several human genes including NACA (nascent polypeptide associated complex subunit alpha) and NACA2 (nascent polypeptide associated complex subunit alpha 2).

NR:

description
PREDICTED: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X3

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0006810 transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920873.2 False 804 mRNA 0.49 8 11892151 11900392
XM_026920874.2 False 784 mRNA 0.48 8 11892151 11900267
XM_034312069.1 False 1858 mRNA 0.52 3 11894478 11900462
XM_034312070.1 True 1859 mRNA 0.52 3 11894478 11900358

Neighbor

gene id symbol gene type direction distance location
LOC113530663 LOC108275530,LOC108435244,LOC107560901,LOC107671993 coding downstream 125 11884544 ~ 11892026 (-)
nfascb LOC108276480,LOC108435243,LOC107737654,LOC107672057,LOC107741310 coding downstream 8128 11863151 ~ 11884023 (-)
LOC113530815 LOC108276064,LOC108276065,LOC108276066,LOC108275619 coding downstream 41708 11821848 ~ 11850443 (-)
LOC113530817 LOC108276066,LOC108276064,LOC108276065,LOC108275619 coding downstream 57956 11829275 ~ 11834195 (-)
uba3 uba3,LOC108435248 coding downstream 150392 11729001 ~ 11741759 (-)
prim1 prim1,LOC107741309 coding upstream 7464 11907926 ~ 11915984 (-)
rnd1a rnd1a,LOC108275558,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding upstream 26444 11926906 ~ 11932495 (-)
slc17a9b slc17a9,slc17a9b,LOC107563661,LOC107560897,LOC106566596 coding upstream 168127 12068589 ~ 12083533 (-)
gid8b gid8b,gid8,LOC108276161,LOC107560896,LOC108231957,LOC107391203,LOC105906441 coding upstream 183523 12083985 ~ 12087721 (-)
trnae-cuc_33 NA coding upstream 240640 12141102 ~ 12141173 (-)
G253509 NA non-coding downstream 114218 11777718 ~ 11777933 (-)
G253492 NA non-coding downstream 134221 11755205 ~ 11757930 (-)
G253499 NA non-coding downstream 147993 11743950 ~ 11744158 (-)
G253494 NA non-coding downstream 177398 11712997 ~ 11714753 (-)
G253433 NA non-coding downstream 271756 11613240 ~ 11620395 (-)
G253538 NA non-coding upstream 3815 11904277 ~ 11904686 (-)
LOC113530483 NA non-coding upstream 243171 12143633 ~ 12150945 (-)
G253749 NA non-coding upstream 316962 12217424 ~ 12217744 (-)
G253843 NA non-coding upstream 491901 12392363 ~ 12393653 (-)
LOC113530910 NA non-coding upstream 706079 12606541 ~ 12607682 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 32805 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 323548 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 429445 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 867142 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 876485 11009463 ~ 11015666 (-)
ptk6b LOC108276246 other upstream 255266 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 997012 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1350678 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 2228501 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 2798810 14699272 ~ 14704270 (-)

Expression


Co-expression Network