prim1 (prim1,LOC107741309)


Basic Information

Item Value
gene id prim1
gene name prim1,LOC107741309
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11907926 ~ 11915984 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920875.2
GAAAAAAACTCACAACTTCTACTCACACACATTTCGTCACTTCCTGATATTTCCCGCGCTGGTTTTTGATACAGCTGTCACTGTGCCACTGAGCTGCAGTAGTTTAATTACTAAACAATGCCGACCTCCGACTATGACCCTGCTTGTTTACCGGATTTGTTGCCACTTTATTACCGCCGACTGTTTCCATACTCACAGTACTATCGGTGGCTAAGCTACGGCGGCGTGTCCAAGAACTACTTCCAGAACCGCGAGTTCTCATTCACTCTCAAAGATGACATCTACGTTCGGTACCAGTCGTTCAGCACCCAGAGTGAACTGGAGAAGGAGATGCAGAAAATGAATCCGTATAAGATTGACATTGGTGCAGTTTACAGCCACAGGCCCAGCCAACACAACACGGTGAAGTCTGGAACGTTTCAGGCACTGGAGAAAGAGCTGGTGTTTGATATCGACATGACTGACTatgatgatgtcagaagctGCTGCAGtgctGCAGATATTTGCTCCAAGTGCTGGACCCTGATGACCATCGCCATTCGTATTCTGGATCGGGCACTGAGAGAGGACTTTGGCTTCCATCACCTCCTGTGGGTGTACTCAGGCAGGAGAGGAGTGCATTGCTGGGTTTGTGACGAAGCCGCCAGGAAGCTGTCAGTGGCGGCTCGTTCGGCTGTGGCCGAGTACCTCAGCTTAGTCAAGGGTGGCGAAGAGACTGTGAGGAAAGTTGTGCTGTCAGAGCCTATTCACCCTTTCATCAGCCAGTCTCTTATTGTAGTAGAGCACTACTTCCCTCAGTACGCAATTGTTGGACAGGAGCTGTTGGGCAGTAAAGCAAGTGTTGACAAAGTGCTCAGCCTATTACCTGAAGATGTCAGGAAGGAGCTATTAAACACTTACCAGACGGAGAAGAATCCAATGAAGCGCTGGGAACAACTAAGGTCTGCAGTGCACCAGAAAAGGGCTACCAGTAAGAAGGGAGCTCAGTACTTTGATAAGGAGATCATGCTGCAGTACTGCTACCCACGCCTGGATGTTAATGTCAGCAAAGGAGTCAACCATTTACTGAAAAGTCCATTTAGTGTCCATCCGAAAACAGGTCGAATTTCTGTACCAATTGACTTGAAAAATCTGGACAAATTCGACCCCTTCGATGTTCCTACAATCAGCCTTATCTGTGAAGAGCTTGACAAACCCCTAGctgctgaggaggaggaagaggagataaAGGATAAAGCAAATGAAACGGAACCTGGTGAACGGCGCAAAATCAGAGATTACAAGCAGACTAGTCTGGGCAAGTATGTGAAGCTCTTTGATCAGTTTCTGGATGCTATGGCTCGTTCTAGAAAAGGAGAGATGCTGAAGAAAAGTGATCTCCAGAAAGAATTTTAATGAGCCAGTGATGGTCCAAAACAACTATTGATGGTCAACTAAGAAATGAGAACTTACTACCTTACTTGATCGTTTTTCTACAACAGAACAGAAATTGAATCAGTTTGCTATAAAGTACATTTGGATGTGTACTTTACCTGGATTCTTGAATGTTTGACATTACTGTAGAATTATCATCACAGAAAAATTAATGATCTGAAAACAGAAGGACACCTTTCATTTTCTGAATTTTGACACTGAACAGATTTTGTACTGTAGAGAAATGTCCTTCTGGTctgttaaaatgtgtttttttttttttaccaagaaatattaaaagtatTGTATATTATTTGCTAGCACATATGCAggaaacacaataaatatagcATTTAATATTGAA

Function

symbol description
prim1 Predicted to enable DNA primase activity. Predicted to be involved in DNA replication, synthesis of RNA primer. Predicted to act upstream of or within DNA replication. Predicted to be part of alpha DNA polymerase:primase complex. Is expressed in several structures, including blastodisc; head; hematopoietic system; nervous system; and pectoral fin musculature. Orthologous to human PRIM1 (DNA primase subunit 1).

NR:

description
DNA primase small subunit

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:1990077 primosome complex cellular_component
GO:0003896 DNA primase activity molecular_function

KEGG:

id description
K02684 PRI1; DNA primase small subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920875.2 True 1777 mRNA 0.44 13 11907926 11915984

Neighbor

gene id symbol gene type direction distance location
naca naca,LOC106571941 coding downstream 7464 11892151 ~ 11900462 (-)
LOC113530993 NA coding downstream 14924 11892927 ~ 11893002 (-)
LOC113530992 NA coding downstream 15506 11892348 ~ 11892420 (-)
LOC113530663 LOC108275530,LOC108435244,LOC107560901,LOC107671993 coding downstream 15900 11884544 ~ 11892026 (-)
nfascb LOC108276480,LOC108435243,LOC107737654,LOC107672057,LOC107741310 coding downstream 23903 11863151 ~ 11884023 (-)
rnd1a rnd1a,LOC108275558,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding upstream 10922 11926906 ~ 11932495 (-)
slc17a9b slc17a9,slc17a9b,LOC107563661,LOC107560897,LOC106566596 coding upstream 152605 12068589 ~ 12083533 (-)
gid8b gid8b,gid8,LOC108276161,LOC107560896,LOC108231957,LOC107391203,LOC105906441 coding upstream 168001 12083985 ~ 12087721 (-)
trnae-cuc_33 NA coding upstream 225118 12141102 ~ 12141173 (-)
zgc:194282 srms,LOC108276248,LOC108435233,LOC107657057,LOC107747981,LOC107672012,LOC107560891 coding upstream 252543 12168527 ~ 12185778 (-)
G253538 NA non-coding downstream 3240 11904277 ~ 11904686 (-)
G253509 NA non-coding downstream 129993 11777718 ~ 11777933 (-)
G253492 NA non-coding downstream 149996 11755205 ~ 11757930 (-)
G253499 NA non-coding downstream 163768 11743950 ~ 11744158 (-)
G253494 NA non-coding downstream 193173 11712997 ~ 11714753 (-)
LOC113530483 NA non-coding upstream 227649 12143633 ~ 12150945 (-)
G253749 NA non-coding upstream 301440 12217424 ~ 12217744 (-)
G253843 NA non-coding upstream 476379 12392363 ~ 12393653 (-)
LOC113530910 NA non-coding upstream 690557 12606541 ~ 12607682 (-)
G253977 NA non-coding upstream 745260 12661244 ~ 12709317 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 48580 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 339323 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 445220 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 882917 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 892260 11009463 ~ 11015666 (-)
ptk6b LOC108276246 other upstream 239744 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 981490 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1335156 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 2212979 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 2783288 14699272 ~ 14704270 (-)

Expression


Co-expression Network