csad (csad,LOC107599458,LOC107706996,LOC107697858)


Basic Information

Item Value
gene id csad
gene name csad,LOC107599458,LOC107706996,LOC107697858
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20567789 ~ 20577934 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920876.2
ATAGGTTTAAGTGCGACTTCAGAGCACACAGAGGACTGCAGAGATGAGTTCAACCGTTACTATAGAGCACACTGTGAGCAAAGTCACAAATGGCCACCTTCATGTGGATGAAGCTGAACTGGACCGTTCAGTTGGTGAGCAGTTCCTCTCCGAGGCTTTCAAAGTGATCCTGGAGGAAGCGGTTCATAAGGCTACCGACGTGAAGGAAAAGGTGTGTGAGTGGAAGGACCCTGACCAACTGAGGGCTCTTTTGGACTTGGAGCTGAGAGACCATGGGGAATCTAATGAAAAGTTGCTGCAGAGAGTACATGATGTCGCCAAATACAGTGTGAAAACCAATCACCCTCGCTTCTTCAATCAGCTGTTCACTGGAGTGGACTACCATGCCCTGACTGGACGCCTCCTCACAGAGACACTCAACACCAGTCAGTACACCTATGAGGTGGCTCCGGTCTTTGTTCTGATGGAGGATGTGGTTCTCCGCAGTCTGCGCTCCCTAGTGGGCTGGTCCGAGGGGGATGGCATATTCTGCCCAGGAGGCTCTATTTCTAACATGTATGCCATGAATGTGGCTCGATATTGGGCGTTTCCGCAGGTGAAGACTCAAGGCCTGTGGTCTGTCCCACGTCTGGCTGTGTTCACATCACAGGAGAGCCACTATTCGATTAAAAAGTCGGCTGCCTTCCTAGGTATCGGGACGGAAAACGTTTACCACGTGAAAGTGGACGAAAGTGGCAGAATGATCCCAGAAGACCTTGAAGCTAAAATTGTTCATGCCAAATCACAAGGTGCTTACCCGTTCTTTGTCAACGCTACAGCTGGCTCCACCGTACAAGGAGCCTTTGACCCTCTGGAGAGCATCGCTGACATAACTGAGAGGAACGGAATGTGGATGCACGTTGATGCCGCTTGGGGAGGAAGTGTGCTGTTTTCcaagaaacacaaacatctAATAGCAGGAATTGAAAGGGCCAACTCTCTAACCTGGAACCCACATAAAATGCTGACGACTGGCCTTCAGTGCTCCGTTATTTTGCTGAGAGACACAACGAACCTGCTGATGCACTGCTACTGCGCCAACGCCACCTACTTGTTTCAGCAAGACAAGTTCTACGACACACATCTGGACACCGGGGATAAGTCCATCCAGTGTGGACGCAAGGTGGATTGTCTGAAACTGTGGCTCATGTGGAAAGCTATCGGCTCGCAGGGCCTCGCTGACCGGGTCGACAAGGCTTTCGCCAATACAAgGTATCTTGTTGAGGAGATGAAGAAAAGAGCAGGGTTTCAGCTGGTCTCTGAGCCGCAGTTTGTGAACGTGTGCTTCTGGTTTGTGCCACCCAGCCTGAGAGGGAAGGAGAATGACACAGATTACCAGGACAAATTAGCAAAGGTGGCACCGCTCATCAAGGAACGCATGATGAAACATGGCTCTATGATGGTGGGTTATCAGCCTCTGGATGGTCGAGTCAATTTTTTCCGCATGGTCGTCCTTTCTACCCAGCTGCAGCACAGCGACTTGGACTTCTTCCTCGACGAGATTGAGAGGCTGGGGAAAGATCTGTAAATGAGCTCTGGGTGCTGTTCATCATTCGTTCTTTAGTCATTGTCCATCATTGTTCTTTCCAGAGGCATTCTTTAAGGTTGCTCTCTATCGCCTTTTGATTTTCTTAGACAAGCAGTGAGTTTCataaatcagtttgtaatttagCTGGAACAGCACTGGCGCTTTGCTGATAAGATTGGGGACCACTGACTTAGAACTGCTAAATGAAGTTTCTTAGAAACATTGCTGGGGCTTCTATTattcatcacttcctgttcaaccttctttcattcttcttttctgGCTGTAGACTTCGTTTATCTTCCAGACTTCTTCCAACTTTTGACTCGAAGCAGACCTCTTCCTGTGCAGGATTAGATTAGactgcttttgtgtttgttctttcgttctttctttctttccttctttctagATTCCAGGTTCCTCACAGTCCTTCAGTCATGTGGCTACTTTTTCAATATTTAAgcatcattttataaataatttctacatttttacagCCACTCCTTTTTGCATCTTAATTTACATCAAACACCTATCCCTGCAGTTTTACTGCAACCCTTTTCATTCTTGTCAACATGATAAAAATTGAGTGTAGCAATAGGtcaattttattacttttattttttaatgaagaaaaaggaGAGCTTTTCTAGCTTTTCTTATAGTCAGTAGCCTACTGACAATAATGTTGTAATATCAAGAACTTATGTGTGCTAGATCAGCTAAATGGACGGTTTATTAGGTACCGCTGTCATACTGGTGCACTTTATAGATATAATATCACTGATGGACAGAGAAGAGGGGGCTGAAAATGGTtcatagcaacagatgggctacagatAGGAATTGTTCATCTATAGGGTAGTTGTACCTGATGAATGTTGGTAAAACTGGCTATAATAAACTGACAACTGAATGTATATTAATGCAACGAATCAATTTATGTGGCTGCAACAGAAATTGCTGGGTTAGAATAAATTGGTCCCTGGTGTCTAGTAGCTATGTAAGTCAGAATGTAAACCCATTGTAATGAATTAGTTctagttgtttttttgtaagcATCAACTTTTGATACATAAGTGTGTTTGAATACATctgaattttcttcttcttttacttacaggaaaaaaatccaccctgaacaactcaCTATCAATATTTATAACGTATGATCTTTAAcatatgtacaatatttttaacatatgaTCTTCCTTTGtccaaaagatttattttatgataaatTCTGAGATGACTTTTTTGGATTAACTTCAGTTTGGTCTGTTTTCCCTATAGCTAAAGGTTTCCCGTGTTACCCATAATGAATTCCAGTGAATTCACCTCTACCGAAAAAGggcgatgcagcagcgctttagtgctttattctggccagctctctcacctcctcacctgtacactctgctcaaacagacctttcatgctaataccaccatcaactCCATCGTACTCGTCATCATAGATTTTTAAATTGCAGAGCCGAGTTTCTGCCGTAACTCCAGGTGCAAACACGTCTTATTAGCTTGCATCTATTGCATTCTGGAGTCCAACATTTGCTGTTCCAACTAATTCTACACGAGACTTCTCATTAATGACATTGAACATTGCTAAAagtggtgagtgagaaaagaagctcttcgTCCATTATGTctgagataatttttttttccctattaaatgccattgtaactgtgtTAGCGATGTTCCCctgtgacaatagtgcagcacACAATCacaacttctcacaggaataaccgACAAAATACCACCAGACTCACTTAGAACatcagaagattttttttcatataaacatatatgatgtgtttcagggtggaattTTCCTTAGACTGTCTTAGACTGTCTGTCAGACTTTAACGTCCTATTGTGTAGACTTGTCTTAATGAGAAACACAAGAGGGCACATGCTACTGTTTGTAGTCAACTTAATTTATCaatgaatgacatttttttttcatggacaAAGTACAAGTGTCAACATGTCAGATTGACAATAAAATGGTTTGTGAACTAGA

Function

symbol description
csad Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Acts upstream of or within heart development and taurine biosynthetic process. Is expressed in several structures, including brain; digestive system; pronephric duct; solid lens vesicle; and somite border. Orthologous to human CSAD (cysteine sulfinic acid decarboxylase).

NR:

description
PREDICTED: cysteine sulfinic acid decarboxylase

GO:

id name namespace
GO:0042412 taurine biosynthetic process biological_process
GO:0007507 heart development biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K18966 GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920876.2 True 3617 mRNA 0.43 14 20567789 20577934

Neighbor

gene id symbol gene type direction distance location
znf740b znf740,LOC107714993,LOC107664257,LOC107599665,LOC107706997 coding downstream 1192 20557604 ~ 20566597 (-)
cbx5 cbx5,LOC103047453,LOC107714996,LOC107664188 coding downstream 58081 20499278 ~ 20509708 (-)
calcoco1a LOC108275893 coding downstream 280576 20274622 ~ 20287213 (-)
nr1d4a LOC108276259,LOC108433411 coding downstream 345676 20205272 ~ 20222113 (-)
mfsd5 mfsd5,LOC107664134,LOC107594050,LOC107599659,LOC107599644 coding downstream 366044 20198866 ~ 20201745 (-)
zgc:174906 NA coding upstream 2673 20580607 ~ 20586424 (-)
spryd3 spryd3,LOC107714925,LOC107664113 coding upstream 35734 20613668 ~ 20658178 (-)
LOC113530420 zbtb39 coding upstream 113872 20691806 ~ 20698192 (-)
agap2 LOC108275864,LOC108433387 coding upstream 121189 20699123 ~ 20718020 (-)
hipk1a LOC108276173,LOC108433383 coding upstream 176728 20754662 ~ 20773067 (-)
G258242 NA non-coding downstream 44144 20522552 ~ 20523645 (-)
G258189 hnrnpa1,LOC108275986,LOC108275985,LOC107707002,LOC107697928,LOC107598948 non-coding downstream 51076 20511166 ~ 20516713 (-)
G258232 NA non-coding downstream 80379 20470193 ~ 20487410 (-)
G258198 hoxc5,hoxc6,hoxc6aa,LOC102238163,LOC107593966 non-coding downstream 165529 20376338 ~ 20402260 (-)
LOC117599243 NA non-coding downstream 194609 20364055 ~ 20373180 (-)
G258258 NA non-coding upstream 11824 20589758 ~ 20593161 (-)
G258268 NA non-coding upstream 32377 20610311 ~ 20611059 (-)
G258411 NA non-coding upstream 198215 20776149 ~ 20776709 (-)
G258424 NA non-coding upstream 305865 20883799 ~ 20884095 (-)
G258427 cptp,LOC108433359,LOC107599683,LOC107697856,LOC107706969,LOC107664144 non-coding upstream 323344 20901278 ~ 20902757 (-)
nfe2 nfe2 other downstream 42325 20518425 ~ 20525464 (-)
G258077 rarg other downstream 295882 20252170 ~ 20271907 (-)
mlh3 mlh3 other downstream 447840 20109782 ~ 20119949 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other downstream 458577 20100999 ~ 20109212 (-)
LOC117599256 LOC103359731 other upstream 251454 20829388 ~ 20868004 (-)
camk2n1b camk2n1,LOC107664141 other upstream 395463 20973397 ~ 20976330 (-)
G258580 map7 other upstream 591052 21168986 ~ 21169698 (-)
trnaq-uug_7 NA other upstream 776505 21354439 ~ 21354697 (-)
fyco1a LOC108275732 other upstream 1347310 21925244 ~ 21954662 (-)

Expression


Co-expression Network