LOC113530673 (rpl22,LOC102779685)


Basic Information

Item Value
gene id LOC113530673
gene name rpl22,LOC102779685
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9998877 ~ 10002568 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920893.2
tgcaaacttttgctctcAACTGTCACACACTGCTCTGTCGATGCATCGACTGCGTCTGCGCTCGATTAGGTATCTACAGCGCGCATGCGCAGTCGCTGTCCTTCCTCTCGCACAACTTTTTCGCCATGGCTCCGCTGAGGAGGCAAGCTGTGCCCAGCAAAGGGGGCaagaaaaagaagcaagtgTTGATGTTCACTCTGGACTGTACACACCCGGTTGAGGATGGCATCATGGATGCAGCCAACTTTGAGCAGTTCCTTCAGGAGCGCATCAAAGTGAACGGCAAAGCAGGAAACCTCGGTGGTGGAGTCATAACTATTGAGAGGAGCAAAAGCAAGATCACAGTTTCTTCCGAGGTTCCCTTCTCCAAAAGGTACCTGAAGTATCTTACCAAGAAGTATTTGAAGAAGAACAACCTCAGAGACTGGCTGCGTGTTGTGGCTAATACGAAGGAGAGCTATGAACTTCGCTACTTCCAGATCAACCAGGAcgaggaggatgaagaggatgaagattaaactgtttctttttatacgtttaaataaattcatttaacaatga

Function

symbol description
rpl22 Enables RNA binding activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22 (ribosomal protein L22).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920893.2 True 561 mRNA 0.47 4 9998877 10002568

Neighbor

gene id symbol gene type direction distance location
arhgef10lb LOC108275881,LOC108434548,LOC107591110,LOC107712685,LOC107703072 coding downstream 16603 9944851 ~ 9982274 (-)
igsf21b igsf21,LOC108275566,LOC107712688,LOC107593375,LOC107687403,LOC107737570 coding downstream 56346 9929268 ~ 9942531 (-)
dhrs3a dhrs3,dhrs3a,LOC108275517,LOC107703071,LOC107712670,LOC107737702,LOC107593436,LOC107687474 coding downstream 70747 9922178 ~ 9928130 (-)
lactbl1a LOC108275962 coding downstream 217882 9774483 ~ 9780995 (-)
eif4g3b eif4g3,LOC108434436 coding downstream 233023 9729374 ~ 9765854 (-)
icmt icmt,LOC107703075,LOC107591113,LOC107593379 coding upstream 14923 10017491 ~ 10022500 (-)
LOC117599272 LOC108275587,LOC108275676,LOC108275637 coding upstream 31705 10034273 ~ 10035819 (-)
LOC113530835 LOC108275587,LOC108275676,LOC108275637 coding upstream 36151 10038719 ~ 10040169 (-)
LOC113530854 LOC108275587,LOC108275676,LOC108275637 coding upstream 43617 10046185 ~ 10047365 (-)
LOC113530745 LOC108275587,LOC108275676,LOC108275637 coding upstream 46736 10049304 ~ 10050616 (-)
G252331 NA non-coding downstream 78729 9917429 ~ 9920148 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding downstream 103352 9895284 ~ 9895525 (-)
G252265 NA non-coding downstream 149181 9847116 ~ 9849696 (-)
LOC117599281 NA non-coding downstream 290074 9704915 ~ 9708803 (-)
G251963 NA non-coding downstream 500576 9498090 ~ 9498301 (-)
G252479 NA non-coding upstream 52309 10054877 ~ 10056083 (-)
LOC117599207 NA non-coding upstream 177220 10179788 ~ 10181888 (-)
LOC117599279 NA non-coding upstream 241473 10244041 ~ 10288684 (-)
G252610 NA non-coding upstream 393827 10396395 ~ 10396740 (-)
G252783 NA non-coding upstream 652746 10655314 ~ 10655522 (-)
LOC117599234 LOC108275963 other downstream 227314 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 1420277 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2489086 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2590620 7399793 ~ 7408257 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other downstream 2674931 7249631 ~ 7323946 (-)
G252373 NA other upstream 26924 10029492 ~ 10029993 (-)
usp21 LOC108276040,LOC108432659 other upstream 458126 10460694 ~ 10469796 (-)
sinup NA other upstream 633933 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 1006895 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 1017963 11020531 ~ 11025009 (-)

Expression


Co-expression Network