slc1a7b (slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428)


Basic Information

Item Value
gene id slc1a7b
gene name slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24091122 ~ 24131107 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920900.2
ATGGCGGTGGCGTTGGATGCAGTGTTTGTGCGGGTGAAGGGTGTCTGCAAGCAGAACGGGCTGCTCATCCTCTCTGTGCTGGCCGTCGTCATCGGCTGCCTGCTCGGATTCTTCCTGCGCACCAAGCAGCTCTCTGAGCAGgaAGTGAAGTATTTCCAGTTTCCAGGAGAGCTCCTAATGAGGATGCTGAAGATGCTGATTCTGCCTCTCGTTGTTTCCAGtctcatgTCAGGTTTGGCGGCTCTGGAGCCGAAGTGCTCGAGCAGGTTAGGCCTCATCACCATCTCCTACTACCTCTGGACCACGTTTCTGGCGGTGGTGGTCGGCATCGTCATGGTCCTGATCATCCACCCTGGGGGCGTGGCCCAGAAAGAGGACTCAGAGGATAGCAGCAAACCCATCATGAGCTCAGCTGATGCTCTGCTCGACCTCAtacgGAACATGTTTCCTGCCAATTTGGTTCAAGCTACATTTCAGCAGTATCGCACTAACAGCGTACCCATCATGAAGACATTGAGGACAACAGAGAGCTCAAGTGTGACACGTCGCACACTCATCTACAATCTCCAAGACGACAACGGTAACAGTGAAAATGGCAGCGATGTCCGTAACTTCCAGCTGGACCTGACGCCTCCGCCTGATGTGGTGATGCGCACCCAGCCTGGAACGAGCGAGGGCATGAACGTGCTGGGCATTGTCATCTTCTCTGCTACTATGgGCATTATGTTGGGCAGGATGGGTCCTAACGGCAGTGCGCTCGTTAACTTCTGCCAAAGTCTTAACGAGGCCGTGCTCAAAATCGTAGCCATTGTTATCTGGTACTTTCCGTTTGGGATCGTGTTCCTGGTGGCTGGAAAGATCCTGGAGATGAGCGATCCGTCAGATATGGGTAAGAAACTGGGATTTTATGCCATTACAGTGGTGATGGGTCTGATCCTGCACGGGCTCTTCATCCTGCCCAGCATGTACTTCTTCATCACCAAGAAAAGCCCCATCGTTTACATCCGGGGAATCCTACAGGCTCTGCTCATCTCTCTGGCCACCTCATCcagctctgcCACGCTGCCCATCACTTTTAAGTGCCTGCTGGAGAACAACCACATCGACCGGCGCATCATTCGCTTCGTGCTGCCTGTCGGTGCCACCATAAACATGGACGGCACGGCGCTGTACGAGGCTGTGGCGGCCATCTTTATCGCTCAAGTCAACAACTACGAGCTGGACTTTGGCCAGATCATCACCATCAGCATCACAGCTACAGCAGCGAGTATCGGTGCGGCAGGCATCCCGCAGGCTGGTCTGGTTACCATGGTAATAGTGCTGACCTCCGTCGGCCTGCCGACCGATgacatcacactcatcatcGCTGTGGACTGGGCTTTGGACCGGTTTCGCACGATGGTGAACGTAATGGGAGACGCGCTCGCTACAGGAATCATGGCGCACATCTGCAGGAAGGACTTCATGCAAGAGGGAGACGGAGTTCCTCTAATCTGCGAGACGAAACCCGTCCACATCCAGCAGCTGATGAACTGCCAGCAGAATAACGGCAGTTTCCAGCCGCTTCCAGCAGGGGGCAAACCTGAGCTCATTTCCCCGGACGTCGCTCGCCTCATGCAGTTAGAGGAAGGAGTGCGACCCCCGCCTCCCGAGCGTAAAATACCCCCAGTGCCCCCACGCCACCTTAAACACAAGGACAAGGAGCACTGCTCCATCGACATGAACGGCCTCGAGACCAACGTATAGCGGCCATGTTGGACGATCTGGACATAAACGATATACGCGGATTAATGGATTAACTTCTTGCTGTAATTTGATTCGGGTTTACGTTTTGTTTTGCGTATTAGTTTGAGGGGATGGAACAGCATTCGTagaattgttattatttttttgtttttgtgaattgTTGTGAGTTTTACACAAAATCAGGTCCATGCTAATCACTTAAATGCTAATTTAGCCTGACATTGCTTTTCAAACTAGCTGGATAGGAATGAATCATGCTAACCAACCAGTGCTGcgagaaaaaaacagatcagcTCAAGA
>XM_026920901.2
ATGGCGGTGGCGTTGGATGCAGTGTTTGTGCGGGTGAAGGGTGTCTGCAAGCAGAACGGGCTGCTCATCCTCTCTGTGCTGGCCGTCGTCATCGGCTGCCTGCTCGGATTCTTCCTGCGCACCAAGCAGCTCTCTGAGCAGgaAGTGAAGTATTTCCAGTTTCCAGGAGAGCTCCTAATGAGGATGCTGAAGATGCTGATTCTGCCTCTCGTTGTTTCCAGtctcatgTCAGGTTTGGCGGCTCTGGAGCCGAAGTGCTCGAGCAGGTTAGGCCTCATCACCATCTCCTACTACCTCTGGACCACGTTTCTGGCGGTGGTGGTCGGCATCGTCATGGTCCTGATCATCCACCCTGGGGGCGTGGCCCAGAAAGAGGACTCAGAGGATAGCAGCAAACCCATCATGAGCTCAGCTGATGCTCTGCTCGACCTCAtacgGAACATGTTTCCTGCCAATTTGGTTCAAGCTACATTTCAGCAGTATCGCACTAACAGCGTACCCATCATGAAGACATTGAGGACAACAGAGAGCTCAAGTGTGACACGTCGCACACTCATCTACAATCTCCAAGACGACAACGGTAACAGTGAAAATGGCAGCGATGTCCGTAACTTCCAGCTGGACCTGACGCCTCCGCCTGATGTGGTGATGCGCACCCAGCCTGGAACGAGCGAGGGCATGAACGTGCTGGGCATTGTCATCTTCTCTGCTACTATGgGCATTATGTTGGGCAGGATGGGTCCTAACGGCAGTGCGCTCGTTAACTTCTGCCAAAGTCTTAACGAGGCCGTGCTCAAAATCGTAGCCATTGTTATCTGGTACTTTCCGTTTGGGATCGTGTTCCTGGTGGCTGGAAAGATCCTGGAGATGAGCGATCCGTCAGATATGGGTAAGAAACTGGGATTTTATGCCATTACAGTGGTGATGGGTCTGATCCTGCACGGGCTCTTCATCCTGCCCAGCATGTACTTCTTCATCACCAAGAAAAGCCCCATCGTTTACATCCGGGGAATCCTACAGGCTCTGCTCATCTCTCTGGCCACCTCATCcagctctgcCACGCTGCCCATCACTTTTAAGTGCCTGCTGGAGAACAACCACATCGACCGGCGCATCATTCGCTTCGTGCTGCCTGTCGGTGCCACCATAAACATGGACGGCACGGCGCTGTACGAGGCTGTGGCGGCCATCTTTATCGCTCAAGTCAACAACTACGAGCTGGACTTTGGCCAGATCATCACCATCAGCATCACAGCTACAGCAGCGAGTATCGGTGCGGCAGGCATCCCGCAGGCTGGTCTGGTTACCATGGTAATAGTGCTGACCTCCGTCGGCCTGCCGACCGATgacatcacactcatcatcGCTGTGGACTGGGCTTTGGACCGGTTTCGCACGATGGTGAACGTAATGGGAGACGCGCTCGCTACAGGAATCATGGCGCACATCTGCAGGAAGGACTTCATGCAAGAGGGAGACGGAGTGAGTCACGTTCCTCTAATCTGCGAGACGAAACCCGTCCACATCCAGCAGCTGATGAACTGCCAGCAGAATAACGGCAGTTTCCAGCCGCTTCCAGCAGGGGGCAAACCTGAGCTCATTTCCCCGGACGTCGCTCGCCTCATGCAGTTAGAGGAAGGAGTGCGACCCCCGCCTCCCGAGCGTAAAATACCCCCAGTGCCCCCACGCCACCTTAAACACAAGGACAAGGAGCACTGCTCCATCGACATGAACGGCCTCGAGACCAACGTATAGCGGCCATGTTGGACGATCTGGACATAAACGATATACGCGGATTAATGGATTAACTTCTTGCTGTAATTTGATTCGGGTTTACGTTTTGTTTTGCGTATTAGTTTGAGGGGATGGAACAGCATTCGTagaattgttattatttttttgtttttgtgaattgTTGTGAGTTTTACACAAAATCAGGTCCATGCTAATCACTTAAATGCTAATTTAGCCTGACATTGCTTTTCAAACTAGCTGGATAGGAATGAATCATGCTAACCAACCAGTGCTGcgagaaaaaaacagatcagcTCAAGA

Function

symbol description
slc1a7b Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC1A7 (solute carrier family 1 member 7).

NR:

description
excitatory amino acid transporter 5-like

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05618 SLC1A7, EAAT5; solute carrier family 1 (glutamate transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920900.2 False 2046 mRNA 0.52 11 24091122 24131107
XM_026920901.2 True 2055 mRNA 0.52 11 24091122 24131107

Neighbor

gene id symbol gene type direction distance location
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding upstream 35598 24048016 ~ 24055524 (+)
mcoln3b mcoln3 coding upstream 123236 23951660 ~ 23967886 (+)
syde2 syde2 coding upstream 169146 23888706 ~ 23921976 (+)
c16h1orf52 c15h1orf52 coding upstream 215735 23872817 ~ 23875387 (+)
ddah1 ddah1,LOC107570409,LOC106584046 coding upstream 226684 23809480 ~ 23864438 (+)
LOC113530931 LOC108275754 coding downstream 35613 24166720 ~ 24188371 (+)
cltrn tmem27 coding downstream 168489 24299596 ~ 24306661 (+)
mdp1 mdp1 coding downstream 181119 24312226 ~ 24315467 (+)
LOC113530532 LOC108275719 coding downstream 389772 24520879 ~ 24528915 (+)
LOC117599218 LOC108275604,LOC102207396 coding downstream 468051 24599158 ~ 24613089 (+)
G260410 NA non-coding upstream 60787 24023376 ~ 24030335 (+)
LOC117599260 NA non-coding upstream 78118 24010675 ~ 24013004 (+)
LOC117599261 NA non-coding upstream 87741 24002549 ~ 24003381 (+)
G260232 NA non-coding upstream 172731 23917881 ~ 23918391 (+)
G260217 NA non-coding upstream 221566 23867651 ~ 23869556 (+)
G260430 NA non-coding downstream 611 24131718 ~ 24131958 (+)
G260431 NA non-coding downstream 4687 24135794 ~ 24140619 (+)
G260434 NA non-coding downstream 14883 24145990 ~ 24146339 (+)
G260409 NA non-coding downstream 27759 24158866 ~ 24161640 (+)
G260441 NA non-coding downstream 39263 24170370 ~ 24171029 (+)
G260415 NA other upstream 58398 24032227 ~ 24032724 (+)
G259993 NA other upstream 701808 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 707469 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1410580 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2548695 21538045 ~ 21542427 (+)
G260483 LOC108275756 other downstream 137470 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 269477 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 493830 24624937 ~ 24636129 (+)

Expression


Co-expression Network