osbpl2b (osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692)


Basic Information

Item Value
gene id osbpl2b
gene name osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14981346 ~ 15002677 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920902.2
ATGAGCCCGCCTACTTCAGGCACTTCCGTCTCTGTGTCAGCTGCGTTAGCGTCCCAGCACTCAGAGGTTCAGTGGGAAGCAGGCGCTGGACTACATCACATTCAAATCAGCACAGGATTATTGGCGTGGGGTTCGTGCAGTCAGGAACATCAGCCAAGCATCCGCGAGGGACCATGTTCTAGTGGCTCGCGCTGGCTGTCTGACAATACAATGAACAATGAGGACGAGTTCTATGATGCCGTCACAGGCTTGGATTCGGACGAGTCATGTGAGGGCACTTCAGAAGCCAGTTTTAAAGATGCAGTAGTGGATGCTGGTGCTGAGAAGAACAATGGCACTGTACAAGAAAATGGAATCAAGAAACGCAGGTCAACACTTCCTGCTCCCATGTTCTCCAGAAATAACTTCAGCGTATGGAGCATCTTGAAGAAATGTATAGGATTGGAGCTGTCTAAGATCACCATGCCCATTGTGTTCAATGAGCCCCTAAGCTTCCTGCAGAGAATCAGCGAGTACATGGAGCACACGTACCTCATCTACAAAGCCTGTGCAGAGTCTGACTCCACTGAGAGAATGCAGGCTGTAGCTGCCTTTGCTGTGTCCGCTGTGGCCTCTCAGTGGGACAGAACTGGAAAGCCGTTTAACCCTCTGTTAGGGGAAACCTATGAACTCACACgaGAGGATCAGGGCTTCAGGTTGATCTCAGAACAGGTGAGTCATCACCCACCAATCAGTGCATTCCATGCTGAGAGTTTAGGAGAGGACTTCCTGTTCCATGGCTCTATATACCCAAAGCTCAAGTTCTGGGGCAAGAGTGTGGAAGCAGAACCAAAAGGAACCATCACGTTAGAGCTCCTCAAGCACAAAGAGGCATACACATGGTCAAACCCTTTCTGCTGTGTACACAATGTCATTGTGGGCAAACTGTGGATTGAGCAATACGGCACTGTAGAAATACTGAATCACAGTACTGGAGATAAGTGTGTGCTGAACTTCAAACCCTGTGGGATGTTTGGCAAAGAGCTGCACAGAGTGGAGGGATACATCCAGGATAAAAGTAAGAAGAAGCTATGTGTGATCTATGGAAAATGGACCGAATGCATATGGAGCGTAGACCCACAGGTGTACGATTCTCATCGCAAGAACGATAAAAAAGGAGCAGCAGACACCAAGAAACAGAAACCGgaggagGCAGATGTTGCAGAAAATGATGATGCAGATGACATGCCGGAGGTACAGGAGACTGTAGCTGTGATCCCTGGTAGCACTCTACTCTGGAGAGTGTGTCCTAGACCACCTCACTCAGCagagATGTATAACTTTACTAACTTTGCTATCACACTGAATGAATTGGAATCTGGCATGGAGGGTGTTTTGCCCCAGACAGACTGCCGCCTACGACCGGACATACGAGCCATGGAGAATGGAGACATGGacgaAGCCAGCAGGGAGAAGGAGAGGCTGGAGGAGAAGCAGAGAGCAGCTCGTAAAGACAGGGCAAAGGATAATGAAGAATGGTCTACTAGGTGGTTTGAGCTGGGAACAAACCCGTACACAGGATCACAGGACTGGCTCTACACTGGAGGTTACTTTGATAGGAAATACACAGACTGTCCTGATATCTACTAATGAGGGACCAGCACTCAAATCCTTTCCTTTCTTACCGCCACAGCATCCAGCATCACATATCAcacatgtgtttatatatatatatatatatagttcatCTGGAACTGATGCTGGTTTTTCATCACTCAACCAAGtatatacatcacacactgctTACCGTATTTAGCAAAACATCTTTAACTTGGTCTGTATTGAAATCAGGGACTTGAGCGCTCATTCTGTAAGTTCTGTATTTCTGATGGGTGAAAGGGGAGGACGTGATCACAGCATTTCGGACTTTCTTATTTTCCCAGCTAGTTGGGGTTTTTGCTGTGAGAGCACTGATGTTTTTCATCTAGATCATAAGGAAAGtgcagaagaaaagaagagggaCTGATTATCAGAGAATTGCCTTATTCTCTGCCTTAGAACTCTTAATACTCCCATTACATCTCTGTGCCCtgtttaattttagtttattgCTCCATGACCGAATCTGCAGGTCAATCTATATAATCAACGCATACTGTGACGCGGAACCAATTTCCTCATGGTCGTAGCCCATACTCAAATGTGTGTGAACCCACAGAGGTGACGAACATTATTGACTTTTGAGAGCACTGATATGCTACAAACTTACCTGACCAACTGGCCACTGTTAAAATAGTCAAAAGTGAATCAAatcataatgatgatgatgatgatgataataatattagtaataataataatgatctgctctgtgtgtgtgtgcgcgtgtgtgcaaTATACTATATTTCAGTTTATGTGAGCATTCTTCACTTGGAGGTACAATATAATGTCCCTGATGGGTTTTTAGTTCTCATGGGGGGATTTTTTTCCGAGTCAGAAACTATAGCAGTTATTCACATAAaagttcacattaaaaaaaaatgcaaccgtgaaatgtatttttaatgactgCTGAGAGATTTGCCTCTGAGTATCATGCGATGTGTGAGCATTTGGGTTGTGATGCTCTGACAAGATtggaattgtaaaaaaaaaaatataaatatatatatatatcatgcaTTCAGTGTCATGCCTAATAGGattaatgttgtgttttgttagctGTCGCAAGTTCCTTGTTATTTGGTCTGACTCTTTTTCACCACTGTTCTGTAATATGGCATATTTCTTGCAGTTGCGTGTATCCAGTTTGTCCTGTCGTATACATCAATTTAGAGCACATCTGATTTAAATTTCATGCATCATGCTGTATTCATTATCACTATTCCTAAACTTGGGTAAACTCGCACACCTCTTGTGAGAGCAGTCACAATCTATGCAACTCATCAAATGTTTGAAATCCCTGTGTATTTACTTGTAACTGTATTAGGTCTGAAGCTAGATAAATAGTCCATAGTTAAGTCTGACTGGGGAAAAATGTCTATAGGCAGTTTATGGGATTGAAAAGTTGCAGCAAAGTATGCTCTCAGCTAATATTATTTCCTTCTCAGTGCCCACAGTTGCTGATGATCACCCTTCCTataatcatattttcttttcccttttcgCTTGATCACTGAAACTCTAGTTATGATATGTGCAGGAGATAATCGTCGCATTGACATTTTCGAGGCACAGTGATGCTAgaatttcatgtgttttattttaaataccaaacttttttcccttcagtgCCTGAGTTTGTATCACTGATActtgacatttttattgtttctcaATCAGTGTCATGGGTGTTTTAAGATTTCTTTAAAAgtatgcgttttttttttttttttttgtctgctgcGTGCTTAACCAAATTTCACTTCCTTTCCCTCAGTGATTAACagtttaaaatgcttaaatgtCAGTGAGAATGTTGGCAGATTTTCACAAGCTGTATGATGTACACATGTACAGTGCATTACACTACTTTGTTGTCTCCATTAAATTAGTTGCTCCATTTAAATGTACATTCGATTATATGAAAACTAGCAATATAAAACTAATACAGATTTTA
>XM_034311947.1
CAGTCAGCCTTGCGTCATGGTTTCTGAATCACTTAGGTCTGTTAGGTCACAGTGAGCAGGgttatgtgttttaaaatgtgtaatacaTCATTGAGCTGATTTTTAATAGGGATTATTGGCGTGGGGTTCGTGCAGTCAGGAACATCAGCCAAGCATCCGCGAGGGACCATGTTCTAGTGGCTCGCGCTGGCTGTCTGACAATACAATGAACAATGAGGACGAGTTCTATGATGCCGTCACAGGCTTGGATTCGGACGAGTCATGTGAGGGCACTTCAGAAGCCAGTTTTAAAGATGCAGTAGTGGATGCTGGTGCTGAGAAGAACAATGGCACTGTACAAGAAAATGGAATCAAGAAACGCAGGTCAACACTTCCTGCTCCCATGTTCTCCAGAAATAACTTCAGCGTATGGAGCATCTTGAAGAAATGTATAGGATTGGAGCTGTCTAAGATCACCATGCCCATTGTGTTCAATGAGCCCCTAAGCTTCCTGCAGAGAATCAGCGAGTACATGGAGCACACGTACCTCATCTACAAAGCCTGTGCAGAGTCTGACTCCACTGAGAGAATGCAGGCTGTAGCTGCCTTTGCTGTGTCCGCTGTGGCCTCTCAGTGGGACAGAACTGGAAAGCCGTTTAACCCTCTGTTAGGGGAAACCTATGAACTCACACgaGAGGATCAGGGCTTCAGGTTGATCTCAGAACAGGTGAGTCATCACCCACCAATCAGTGCATTCCATGCTGAGAGTTTAGGAGAGGACTTCCTGTTCCATGGCTCTATATACCCAAAGCTCAAGTTCTGGGGCAAGAGTGTGGAAGCAGAACCAAAAGGAACCATCACGTTAGAGCTCCTCAAGCACAAAGAGGCATACACATGGTCAAACCCTTTCTGCTGTGTACACAATGTCATTGTGGGCAAACTGTGGATTGAGCAATACGGCACTGTAGAAATACTGAATCACAGTACTGGAGATAAGTGTGTGCTGAACTTCAAACCCTGTGGGATGTTTGGCAAAGAGCTGCACAGAGTGGAGGGATACATCCAGGATAAAAGTAAGAAGAAGCTATGTGTGATCTATGGAAAATGGACCGAATGCATATGGAGCGTAGACCCACAGGTGTACGATTCTCATCGCAAGAACGATAAAAAAGGAGCAGCAGACACCAAGAAACAGAAACCGgaggagGCAGATGTTGCAGAAAATGATGATGCAGATGACATGCCGGAGGTACAGGAGACTGTAGCTGTGATCCCTGGTAGCACTCTACTCTGGAGAGTGTGTCCTAGACCACCTCACTCAGCagagATGTATAACTTTACTAACTTTGCTATCACACTGAATGAATTGGAATCTGGCATGGAGGGTGTTTTGCCCCAGACAGACTGCCGCCTACGACCGGACATACGAGCCATGGAGAATGGAGACATGGacgaAGCCAGCAGGGAGAAGGAGAGGCTGGAGGAGAAGCAGAGAGCAGCTCGTAAAGACAGGGCAAAGGATAATGAAGAATGGTCTACTAGGTGGTTTGAGCTGGGAACAAACCCGTACACAGGATCACAGGACTGGCTCTACACTGGAGGTTACTTTGATAGGAAATACACAGACTGTCCTGATATCTACTAATGAGGGACCAGCACTCAAATCCTTTCCTTTCTTACCGCCACAGCATCCAGCATCACATATCAcacatgtgtttatatatatatatatatatagttcatCTGGAACTGATGCTGGTTTTTCATCACTCAACCAAGtatatacatcacacactgctTACCGTATTTAGCAAAACATCTTTAACTTGGTCTGTATTGAAATCAGGGACTTGAGCGCTCATTCTGTAAGTTCTGTATTTCTGATGGGTGAAAGGGGAGGACGTGATCACAGCATTTCGGACTTTCTTATTTTCCCAGCTAGTTGGGGTTTTTGCTGTGAGAGCACTGATGTTTTTCATCTAGATCATAAGGAAAGtgcagaagaaaagaagagggaCTGATTATCAGAGAATTGCCTTATTCTCTGCCTTAGAACTCTTAATACTCCCATTACATCTCTGTGCCCtgtttaattttagtttattgCTCCATGACCGAATCTGCAGGTCAATCTATATAATCAACGCATACTGTGACGCGGAACCAATTTCCTCATGGTCGTAGCCCATACTCAAATGTGTGTGAACCCACAGAGGTGACGAACATTATTGACTTTTGAGAGCACTGATATGCTACAAACTTACCTGACCAACTGGCCACTGTTAAAATAGTCAAAAGTGAATCAAatcataatgatgatgatgatgatgataataatattagtaataataataatgatctgctctgtgtgtgtgtgcgcgtgtgtgcaaTATACTATATTTCAGTTTATGTGAGCATTCTTCACTTGGAGGTACAATATAATGTCCCTGATGGGTTTTTAGTTCTCATGGGGGGATTTTTTTCCGAGTCAGAAACTATAGCAGTTATTCACATAAaagttcacattaaaaaaaaatgcaaccgtgaaatgtatttttaatgactgCTGAGAGATTTGCCTCTGAGTATCATGCGATGTGTGAGCATTTGGGTTGTGATGCTCTGACAAGATtggaattgtaaaaaaaaaaatataaatatatatatatatcatgcaTTCAGTGTCATGCCTAATAGGattaatgttgtgttttgttagctGTCGCAAGTTCCTTGTTATTTGGTCTGACTCTTTTTCACCACTGTTCTGTAATATGGCATATTTCTTGCAGTTGCGTGTATCCAGTTTGTCCTGTCGTATACATCAATTTAGAGCACATCTGATTTAAATTTCATGCATCATGCTGTATTCATTATCACTATTCCTAAACTTGGGTAAACTCGCACACCTCTTGTGAGAGCAGTCACAATCTATGCAACTCATCAAATGTTTGAAATCCCTGTGTATTTACTTGTAACTGTATTAGGTCTGAAGCTAGATAAATAGTCCATAGTTAAGTCTGACTGGGGAAAAATGTCTATAGGCAGTTTATGGGATTGAAAAGTTGCAGCAAAGTATGCTCTCAGCTAATATTATTTCCTTCTCAGTGCCCACAGTTGCTGATGATCACCCTTCCTataatcatattttcttttcccttttcgCTTGATCACTGAAACTCTAGTTATGATATGTGCAGGAGATAATCGTCGCATTGACATTTTCGAGGCACAGTGATGCTAgaatttcatgtgttttattttaaataccaaacttttttcccttcagtgCCTGAGTTTGTATCACTGATActtgacatttttattgtttctcaATCAGTGTCATGGGTGTTTTAAGATTTCTTTAAAAgtatgcgttttttttttttttttttgtctgctgcGTGCTTAACCAAATTTCACTTCCTTTCCCTCAGTGATTAACagtttaaaatgcttaaatgtCAGTGAGAATGTTGGCAGATTTTCACAAGCTGTATGATGTACACATGTACAGTGCATTACACTACTTTGTTGTCTCCATTAAATTAGTTGCTCCATTTAAATGTACATTCGATTATATGAAAACTAGCAATATAAAACTAATACAGATTTTA

Function

symbol description
osbpl2b Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Is expressed in several structures, including blastodisc; digestive system; nervous system; otic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 67. Orthologous to human OSBPL2 (oxysterol binding protein like 2).
osbpl2 Enables cholesterol binding activity; lipid transfer activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in lipid transport; plasma membrane organization; and protein homotetramerization. Located in cytosol. Is extrinsic component of cytoplasmic side of plasma membrane. Colocalizes with lipid droplet. Implicated in autosomal dominant nonsyndromic deafness 67.

NR:

description
PREDICTED: oxysterol-binding protein-related protein 2-like isoform X2

GO:

id name namespace
GO:0006869 lipid transport biological_process

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920902.2 True 3601 mRNA 0.42 15 14981346 15002677
XM_034311947.1 False 3596 mRNA 0.41 15 14981346 14997524

Neighbor

gene id symbol gene type direction distance location
adrm1 adrm1,LOC106534082,LOC103354471,LOC105894265,LOC107727009,LOC108276396 coding downstream 2058 14973016 ~ 14979288 (-)
slc16a7 LOC108276076,LOC108429289 coding downstream 134331 14840288 ~ 14847015 (-)
zgc:171775 LOC108276094,LOC108429287,LOC103042110,LOC107705698,LOC107666627,LOC107559857,LOC107551519,LOC107727002 coding downstream 232751 14741169 ~ 14748595 (-)
LOC113530599 krt18,LOC107681396,LOC107727028,LOC107551541,LOC107666358,LOC107568050 coding downstream 307380 14669816 ~ 14673966 (-)
eif4ba eif4b,eif4ba,LOC107666323 coding downstream 335041 14624061 ~ 14646305 (-)
acss2 acss2,LOC108438110,LOC107666475 coding upstream 91120 15093797 ~ 15116626 (-)
gss gss,LOC107594436 coding upstream 122670 15125347 ~ 15140979 (-)
si:rp71-79p20.2 LOC108275774 coding upstream 184721 15187398 ~ 15257751 (-)
birc7 LOC108275549 coding upstream 337319 15339996 ~ 15357857 (-)
lmod3 lmod3 coding upstream 409493 15412170 ~ 15451350 (-)
G255306 NA non-coding downstream 102840 14875644 ~ 14878506 (-)
G255020 NA non-coding downstream 448758 14530825 ~ 14532588 (-)
G254567 NA non-coding downstream 1280941 13700009 ~ 13700405 (-)
G254600 NA non-coding downstream 1284726 13692797 ~ 13696620 (-)
G254599 NA non-coding downstream 1315873 13664893 ~ 13665473 (-)
G255403 NA non-coding upstream 177709 15180386 ~ 15180640 (-)
G255385 NA non-coding upstream 179480 15182157 ~ 15227960 (-)
G255435 NA non-coding upstream 329449 15332126 ~ 15332451 (-)
G255506 NA non-coding upstream 451456 15454133 ~ 15454354 (-)
G255693 NA non-coding upstream 650170 15652847 ~ 15657703 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 277076 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 830765 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 1697461 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 2047038 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 2813551 12155728 ~ 12167795 (-)
LOC113530775 NA other upstream 255808 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 655659 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 1645146 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 1785124 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 1850251 16852928 ~ 16871164 (-)

Expression


Co-expression Network