ctnnbl1 (ctnnbl1,LOC107694421)


Basic Information

Item Value
gene id ctnnbl1
gene name ctnnbl1,LOC107694421
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23244729 ~ 23279510 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920910.2
CTGAAGGTGTCGCTGCTGAGCTAGGAGTGTTTTCTTCTCCTCAATACACCGAAGAAGAAATAAACTTTGCACGGCGTTGACTGTGCTGCTAATATTTTACGCATTAAATAAGCATTTCTGTGGGGTAAATTCGGTCTTTAAAAAACTATGGACGTTGGTGAGCTGCTGAATTATCAGCCTGAGCGGGGAGGCAAGAGGCCGAGGGAGGAGAGCGGCTCCGAGGAGTCTCGGGTGAAGAAGAGCAGGGAGCCTCCGAGACCCGCGGCGCCGATCCCGGAACCCGAGCCGGAAGATCCGGAGAACAGAGAGAGGATCCTGGAGAAGCTCATGGACCAGGATGAGGTGGACCCTGAGGGTGAGCCGGTGGACGAGAGCATGGTGAAGAAAATGATCCTGACCTTCGAGAAGAGGTCGTACAAAAACCAGGAGCTCAGGATTAAATTCCCAGACAATCCAGAGAAGTTCATGGAGTCTGAGCTGGACCTGAATGACATCATCCAGGAGATGCACGTGATCACCACCATCCCTGAGCTGTATCACCTGCTGGTGGAGCTGAACGCTGTGCAGTCTCTGCTCGGCCTGCTGAGCCACGAAAACACTGATATCGCCATCGCGGTGGTGGACCTGCTGCAGGAGCTCACAGACGTCGATACGCTCAACGAGAGCGAGGAAGGAGCCGAGGTCCTCATCGACGCCCTGctgGAGGGCCAGGTGGTGGCGCTGATGGTGCAGAACATGGAGCGGCTGGACGAGACGGTGAAAGAAGAAGCGGATGGAGTTCACAACACGCTAGCCGTGGTGGAGAACATGGCCGAGTTCAGACCGGGTCTGTGCACCGAAGCCGCTCAGCAGGGACTCATGCAGTGGCTCCTCAAGAGGATTAAGGCTAAGATGCCTTTTGACGCTAACAAGCTGTACTGCAGTGAGATCCTGGCCATCCTCCTCCAGAGCAACGACGgcaCCAGGGAGCTTTTGGGCGAGATGGACGGCATCGATGTGCTCCTGCAGCAGCTCTCAGTGTTCAAGAGGCACAACCCGTCCACGCCGGAGGAGCAGGAGATGATGGAGAACCTGTTTGACGCTCTCTGCTCCTGTCTCATGTTGCCAGCCAACCGCGACCGCTTCCTTAAGGGGGAGGGGCTTCAGCTGATGAACCTCATGCTCAgggagaaGAAGTTGTCTCGCACTAGCGCCCTCAAGGTCCTGGACCACAGCATGATCGGCCCCGAGGGCACTGATAACTGCCACAAGTTTGTTGACATCCTCGGACTTCGCACCATTTTCCCGCTGTTCATGAAGACACCGAAGAAGATGAGGAAGGCTGGAGTGTCAGACAAGGAGCATGAAGAGCATGTGTGCTCCATCCTGGGGTCCATGTTGAGGAACCTGAAGGGGCAGCAGAGGAGCCGCCTGCTCAGCAAGTTCACCGAGAACGACTGTGAGAAGGTGGACAGACTGATGGAGCTGCATTTTAAGTACCTGGAGGCCGTTCAGCTCGCAGACAGGCGGATTGATGGAGAGAAGCAcGACATGGTGCGGCGGGGCGAAATCCTGGATGACACTATGGAGGACGAGTTTTACCTGCGACGTTTAGACGCTGGTCTTTTCGTCCTGCAGCTGATCTGTTACATCATGGTGGAGATCAGCAGTGCAGGAATTCCACAGCTGCAGCAGAGAGTACATCAAATCCTGAACCTGAGGGGTGGATCGGTTAAGACGGTGCGGCACATCATGAGAGAATACGCAGAGAGTATCGGTGACGGCAAGAACGAGGAGTACAGACTGAGCGAGCAGAAACGGATCATGGAGCTTCTGGAGGATTTCTAACTTTCCAATCGGATCACGGATCACAGATCCGAACACCAATGACTGCTGTCtgatttctctgtaaataaTGTGTTTGATAAATTGATGTCATGACTAACGGCTCAAGCAACACGAGCATCACGTTAAATGTGAAGGTCAATACTGAACCGTGTTTCTGTTGCTTCTTTGCTATAAAGCACATTTTGTATACGAGTCATTTTTAAACTGGACTTGTGAGAACAAGACCAACCGAAAAGatgtaataaaatttttttttgctttgtcacgtgtgagtgagtgataaTTGCTAAGACTGGCCTTGCTGTGATGTGTGCTGTTTTTAGCATGACGATGTACAACATCTAAAACACTGCGTCCAGGCGAAACGCCATCTTTAAGGCACATTTCCAACACAGGAACACTTCTCATACCAAGCTCAGAAGTTTCAGATCCATGTTCATGGAATGTTCATGCTGAACACCAAatgataactaaataaaaacttcTCCCCATGTA

Function

symbol description
ctnnbl1 Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Human ortholog(s) of this gene implicated in colorectal cancer and morbid obesity. Orthologous to human CTNNBL1 (catenin beta like 1).

NR:

description
PREDICTED: beta-catenin-like protein 1

GO: NA

KEGG:

id description
K12864 CTNNBL1; beta-catenin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920910.2 True 2322 mRNA 0.52 16 23244729 23279510

Neighbor

gene id symbol gene type direction distance location
rprd1b rprd1b coding downstream 58423 23181609 ~ 23186306 (-)
dlgap4a LOC108276061,LOC108439469 coding downstream 117773 23019730 ~ 23126956 (-)
pfkfb2a pfkfb2a,LOC108276158,LOC108439471,LOC104942567,LOC103358644 coding downstream 240122 22986458 ~ 23004607 (-)
LOC113530928 NA coding downstream 422532 22813004 ~ 22822197 (-)
LOC113530929 NA coding downstream 434108 22801924 ~ 22810621 (-)
itchb LOC108276113,LOC108442805,LOC108233117 coding upstream 51739 23331249 ~ 23359264 (-)
LOC113530415 NA coding upstream 114162 23393672 ~ 23395815 (-)
LOC113530552 NA coding upstream 243903 23523413 ~ 23527413 (-)
abce1 abce1,LOC108275804,LOC108441533,LOC107653221 coding upstream 267915 23547425 ~ 23556299 (-)
LOC113530272 LOC108275809 coding upstream 277450 23556960 ~ 23562364 (-)
G259897 NA non-coding downstream 63137 23180382 ~ 23181592 (-)
G259839 NA non-coding downstream 222049 23022414 ~ 23022680 (-)
G259838 NA non-coding downstream 223159 23021361 ~ 23021570 (-)
G259812 NA non-coding downstream 226369 23017306 ~ 23018360 (-)
G259809 NA non-coding downstream 232367 23010849 ~ 23012362 (-)
G260021 NA non-coding upstream 53159 23332669 ~ 23335335 (-)
G260055 NA non-coding upstream 189291 23468801 ~ 23469073 (-)
G260056 NA non-coding upstream 194540 23474050 ~ 23474641 (-)
G260071 NA non-coding upstream 242705 23522215 ~ 23522708 (-)
LOC117599235 NA non-coding upstream 588997 23868507 ~ 23872875 (-)
LOC113530288 vstm2l other downstream 4382 23192257 ~ 23240347 (-)
si:ch73-217n20.1 NA other downstream 263743 22961578 ~ 22980986 (-)
G259306 LOC108275814,LOC108411446 other downstream 795302 22446030 ~ 22449427 (-)
cpeb2 cpeb2,LOC108276376 other downstream 1196341 22016047 ~ 22048388 (-)
fyco1a LOC108275732 other downstream 1290067 21925244 ~ 21954662 (-)
e2f1 e2f1 other upstream 29389 23308899 ~ 23317464 (-)
G260310 NA other upstream 484164 23763674 ~ 23764163 (-)
LOC113530810 LOC108275656 other upstream 693855 23973365 ~ 23979695 (-)
reps2 reps2 other upstream 994227 24273737 ~ 24316415 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other upstream 1094763 24374273 ~ 24386255 (-)

Expression


Co-expression Network