ftr92


Basic Information

Item Value
gene id ftr92
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21829265 ~ 21835197 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920917.2
TAATGTCTTAATGAACATGATCTTTACCTCTTGTTTAACTTGTCTTGTTGTTTCCTGACCATCCACTGGGACCATTTGTTGCTCATCACAACGGGTTTTGCTGAATAAATTAAGCTTACTGAAGCTCCTCCTCCACATGCGAAGAGAGATCCTgagaaatgaaactgaaattgTGGTTCTCTGCTTCCGGGACAGATCTCTTTTACTCTTCCCTGCtgcatacattaaaaatgataacCACCAGCAAGCCACGCTCACGGAACCTTCCTGAGTGCTGTTTGTGTCTTACAAAGTCTAAGGATGTTGTTACTATTCCCTGTGGGCACTACTACTGCACTTCCTGCACTGACGGCTTGGTCAGTAAGTATGAACGCACAGGCTCGTACAGCTGCCCAcagtgttcacaaactttctccACCAAGCCTGATCAGGATGGACCAGTGGACACAGCTGTGGACAGTCTCAGAGAGACAGATCTCTACACTGAACCCTCAGCAGCCCCAGCTGCTGGTCCATCCTCTTCCAGCTTGACCAGGCCTGAGCAGGGCAGCCCTGTGGACAAACTGAGAAAGACAGCTTTCCACATGCACACCACAGCAGACACCACTTCCAGGCCTGAGGACGTGGCCTGCGACGCGTGCACTGACAGCACACACAAAGCTGTCAGGTCCTGCCTGATGTGTCTGGCCTCATACTGTGACACACACCTCCGGCTGCACAACGACCTCCATGTGAGGGCTGCACACACTCTGGTGGATGCTTCTGATCAGCTACAGGCCACTTCGTGCTCCATACACGGTAAAGTCCTGGAGGTTTATTGCCTTAAAGACAAACAACGTATCTGTTGCATGTGCATGCTGGAGGATCATAAAGGGCATGACATGGTGGCAGCAGGACAGGCAGAAAAGAAGGAGGAGTTAAGAAATTCCAAGCAGATGATCACAGAGCAAGAGAAGCAGCTCAAGGAGCTTCGCTTGGCTAAAAACTCTCTCAGGCACATCGCAATAGCTACGGAGGAGGAGAGCGAGCGGCTTTTCACCGAGCTGATCCGCTCTATACAGGGCAGCCAGTCTCTGATGAAGGTCCTGATCCGAGCTCAGGAGCGAGCAGAACTGGACCGAATCAAGGAGGTGATGAagcaggtggaggaggagtTAACTGAGCTGAAGAGGAGTGATGCTGAGATGGAGCAGCTCTCGAGCACTCAGAATGACATCCACTTCCTACAGTCAGTTCAGGCCCTGAGTCTCACTTCTGCAAATGTCTTAAAGATGACGGTCAATCCTCAGTTCTCTTTCGGCGAAGTGGTGAAATCCATCTCTGTGCTCAAGGAGCAGATAGAAGACATCTGGCAGCGTGAATTTGATCAAATAGCAGCAGCAGTGAAAAAAGACAAGATTGTAGTTCCTTCTGAACCGAAGACAAGAAAGGACTTCCTGCAATATCTGGTCCCGCTGTCTCTGGACCCCAACACAGCCCACCAGAGCCTGAAGATGTGTGAAGAGAAGAGCGTGGCGTGCAGCACCAAGTGCCAGCCCTACCCTGACCACACTGAACGCTTTGACTGGTGGGCTCAGGTTCTGTGCCGAGAGCCTCTGAATACACGCTGCTACTGGGAGGCCGAGTGGACGGGATTACATGGAGTGGACATTGCAGTCTCGTACAGAGACATCACCCGGAAGGGAGAAGATGATGAATGCAGCTTTGGGTACAACAAACAGAGCTGGAGTTTGGACTGTGCCATATTGAAATATGCTTTTGTGCATGACAATGTCGAAACGGACATCTCAGCACCTGTATCCCACAGGATAGGGGTGTATCTCGACTACAAGGCCGGAGTGCTGGCCTTCTATAGCGTCTCGGACTGTATGACGCTCCTCCACAGAGCAGAGACGAGGTTCACACAGCCTCTATATGCCGGGTTTGGGTTGTATCAGGGATCCACAGTGAAGATATGCCAGCCAGACACAGAGGCAAAACAAACAGATACCCAAAGAATCAAGAGCAGTACAACTGAGAATGGAAAAAACACACGAAGAAAAGAGCACAATGGGCTCCCCTTTGGGGCTGGTGTTTAACATTTCGACCTGTTGTCAGGGGATCACTAGGTTGAAACCTAACAATGCCACAGGCATCTATGCCCGAGAGTCCATGTAAAGGATAAATGGATTTGCTCTCCATAAGCAATGATGGCATTTTCTTTTGTGTCAATCAGAGCAATGCTAGCCAATCACAGGACTTACTTACTGTTAGGCTCACTTAATGTCTCCTCCAAGCATATTCAGCTATTCATTGGTGCAGTGGCTGGCTTTATCAGGCATGTATTAGCCTTCGTCTTCTAGAAGTGATAGCTGTCAATAGCTGTGAAAATccaaaaaatggggaaaaagaaagaataatggGATTTCTGGCACCTAAAAAAGGTTCCTGTTCAACTTTTACAGAAGCaaaactggaagaaaaaaaaaaaaaccactgaaaaTCCATGTAAAAGGGTTAAATATTCTTGTACATTCAGGGTTGGGAACTTttccatgtgctttt

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920917.2 True 2544 mRNA 0.48 7 21829265 21835197

Neighbor

gene id symbol gene type direction distance location
LOC113530264 scml2,LOC108275918,LOC107694433,LOC107752426,LOC107564407 coding downstream 157913 21628132 ~ 21671352 (-)
LOC117599277 NA coding downstream 333210 21494416 ~ 21496055 (-)
LOC117599258 NA coding downstream 354423 21472718 ~ 21474842 (-)
ednrab LOC108276021 coding downstream 524637 21297056 ~ 21304628 (-)
LOC113530756 LOC108276020,LOC108435576,LOC107101953 coding downstream 534492 21287614 ~ 21294773 (-)
gpsm2l LOC108275742,LOC108435558,LOC107754905,LOC107697895 coding upstream 23015 21858212 ~ 21883246 (-)
ghrhrl ghrhr,LOC108275741 coding upstream 49468 21884665 ~ 21921592 (-)
cc2d2a cc2d2a coding upstream 133417 21968614 ~ 21992840 (-)
LOC113530694 c1qtnf7,LOC107670563,LOC108240206 coding upstream 159837 21995034 ~ 22000942 (-)
LOC113530687 LOC108275733 coding upstream 164244 21999441 ~ 22014229 (-)
G258966 NA non-coding downstream 22505 21805096 ~ 21806760 (-)
G258961 NA non-coding downstream 30021 21798836 ~ 21799244 (-)
G258942 NA non-coding downstream 76813 21751405 ~ 21752452 (-)
G258940 NA non-coding downstream 79264 21749791 ~ 21750001 (-)
LOC113530427 NA non-coding downstream 230136 21588429 ~ 21599129 (-)
G259294 NA non-coding upstream 506664 22341861 ~ 22371089 (-)
G259337 NA non-coding upstream 587395 22422592 ~ 22424242 (-)
LOC117599239 NA non-coding upstream 632466 22467663 ~ 22469753 (-)
G259692 NA non-coding upstream 818141 22653338 ~ 22656929 (-)
G259724 NA non-coding upstream 907547 22742744 ~ 22787979 (-)
trnaq-uug_7 NA other downstream 474568 21354439 ~ 21354697 (-)
G258580 map7 other downstream 659567 21168986 ~ 21169698 (-)
camk2n1b camk2n1,LOC107664141 other downstream 852935 20973397 ~ 20976330 (-)
LOC117599256 LOC103359731 other downstream 961261 20829388 ~ 20868004 (-)
nfe2 nfe2 other downstream 1303801 20518425 ~ 20525464 (-)
fyco1a LOC108275732 other upstream 90047 21925244 ~ 21954662 (-)
cpeb2 cpeb2,LOC108276376 other upstream 180850 22016047 ~ 22048388 (-)
G259306 LOC108275814,LOC108411446 other upstream 610833 22446030 ~ 22449427 (-)
si:ch73-217n20.1 NA other upstream 1126381 22961578 ~ 22980986 (-)
LOC113530288 vstm2l other upstream 1357060 23192257 ~ 23240347 (-)

Expression


Co-expression Network