LOC113530692



Basic Information


Item Value
gene id LOC113530692
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21955558 ~ 21958696 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026920920.2
tgtttgttttttgttttgtttttttttttttttgttttttcaatttttcaattgGTCAACCTTCAGAATAAGAGTTTCTTCCAAACTATAAAGGAGCTacttcatataattttttttccccattggaGTTACAAGGAAGATTTCATTCTTTGAGCCAAACTGGAGCAATAATTACAGACACGAAATGGAAAACTATATGACAtatgattatattaatataagcGACATTGAAGAGGGTTTGTGTCGCAAAGAAGCTGTGGCAAAAGTTGGATCCATCGTTGTCCCATTATTCTTCAGCATCGTGGTCTTGCTCAGTCTCATTGGTAACCTTTTGGTTCTTGTGATTCTTGGGATATATGAGAATCTCAAATCATTGACCAATGTCTTCATACTGAACTTGGCcgtgtcagacctgctgttcaCTGTCGGACTGCCGTTCTGGGCCTGTTACTACATCTGGGGTTGGACTCTTGGAGACCCAGCATGCAAAGCTGTCAACTTTTTCTTCTACGCTGGGTTTTACAGCAGCATCGTGTTTCTGGTGCTTATGACCATTCAGCGCTACATGGCCGTGGTGCACCCTCTCTCGGACTGGGAAAGAGGACAGGGTTTTGCACTAATCCCCATCATCGCTTGGGTGGTGAGCATCGCAGCGGCGTTGCCAGCCCCACTCTACAGCTCAGTCCAGGATGACCCAGAAGACTCCCTAAAACATTACTGTGAGCATAATATCACTGCTGCATATTTGACCATTACATACGAacagaactgtttttttgtctgcGCCTTTTTGATCATGGGTTTTTGCTATGTAAGAATTCTGCAGACCATCTTCAAGACACGAACGAACAAGAGACACCGTTCTATCAGACTCGTCTTCTGCATTGTAGTCGTGTTCTATTTTGGTTGGGCTCCTTATAACCTGGTGATTTTTCTGCAAACCTTTACTCACCATGGGATTGAGTTTTTCACACGCTGTAATGTCACACATCATCTTGACTACACCGAATACGTCTGTAAGCTTCTGGCATTTTCACACTGCTGCCTTAATCCcgtgttttatgtttttgttggtGTGAAATTCAGGAATCATCTAAAGGGGATTCTGCAGAAGATTTTTCAAACCCCACCGATCGTGGACATGCAACACACACGAACTGGCACCATTCAGTCCATGTGCTCAAACAGCAACAACTGCAGAAGCAATTCCACAACTATCTGAGTCAGTGTAAATATATGCATGAGTGATGTAAGTGATTTATCCGATGCTTAAATAGGTGGAGgttgaggctttttttttttaaataaagatataaagatataacatgtactgtacttttttaaaataatattaaaagtagATGTTTGGAGATTTTTCCTTAACTAAATGCAAATTTGAGATTTTATTTGATCCAGAACGACCATTAATTGCTTTTGAGAAAACCTAAGTTCATTGGTGCCTTATATAAAACCCCACAATCTCTTTCAAACGGTATTATAACGTTGTCTGGAGGAACATCATAAACATGCATAACTGGACATTAAAGGCATCTGATATAGTTTTGAGTGTACATTTCCATTGTGGACATCAAGTGAATGTGCTGTGTTTAGAGAACTCAGACTCCCCATTAGCAAACAAATGGACATagttttttttcaaaagtgATTCAAACTCAAGTCTATACTGGTAGCACATCCTACAGGATTATTCATGAAACCAAATTGCTTAgaattttgtttcattaaactacattttcattgttttcatcACAGCATTTTTTGTAAGCAGTAACTTTTAAcaggcaaaaataaaaccacatacGTACGCATTCAGGGAAACATTTAGGAGCAACTGTTATTAGCTGAATGGTAATTAGCTGAGCTCTTTACCACCAGTTCCCCTGTTGGTCTGATATAAAGGTTAAACCACATGATGACACGTTCGTTGATGTCTTCATTGGTAATTTGGAAGGTAACTGGGTTCTTTCTTACTATATTtttcacacatatatatgttataCTTCTATGAAAGAGAGAACTGTACTCTCTATTTGTGCATAAGGAATACATGTAGGTGTagttgtgaaatgttttataagCTAATCTTATGTTCTTTAcgtttttgcttgtttgttttgtatatattttagtttgtttaaatgtgtaatttCTAAAGCACTTTGGGCAATGCCA
>XM_026920921.2
cctgggttcgattcggagctctggttactgtctgcgTGGAGTTTCACATCTTCTCCCTGGGcccacgtgggtttcctctgggttctctggtttccttctagcttccaaaaacatggccaccctAAATTACCCGTAGGTTattAAAACTATATGACAtatgattatattaatataagcGACATTGAAGAGGGTTTGTGTCGCAAAGAAGCTGTGGCAAAAGTTGGATCCATCGTTGTCCCATTATTCTTCAGCATCGTGGTCTTGCTCAGTCTCATTGGTAACCTTTTGGTTCTTGTGATTCTTGGGATATATGAGAATCTCAAATCATTGACCAATGTCTTCATACTGAACTTGGCcgtgtcagacctgctgttcaCTGTCGGACTGCCGTTCTGGGCCTGTTACTACATCTGGGGTTGGACTCTTGGAGACCCAGCATGCAAAGCTGTCAACTTTTTCTTCTACGCTGGGTTTTACAGCAGCATCGTGTTTCTGGTGCTTATGACCATTCAGCGCTACATGGCCGTGGTGCACCCTCTCTCGGACTGGGAAAGAGGACAGGGTTTTGCACTAATCCCCATCATCGCTTGGGTGGTGAGCATCGCAGCGGCGTTGCCAGCCCCACTCTACAGCTCAGTCCAGGATGACCCAGAAGACTCCCTAAAACATTACTGTGAGCATAATATCACTGCTGCATATTTGACCATTACATACGAacagaactgtttttttgtctgcGCCTTTTTGATCATGGGTTTTTGCTATGTAAGAATTCTGCAGACCATCTTCAAGACACGAACGAACAAGAGACACCGTTCTATCAGACTCGTCTTCTGCATTGTAGTCGTGTTCTATTTTGGTTGGGCTCCTTATAACCTGGTGATTTTTCTGCAAACCTTTACTCACCATGGGATTGAGTTTTTCACACGCTGTAATGTCACACATCATCTTGACTACACCGAATACGTCTGTAAGCTTCTGGCATTTTCACACTGCTGCCTTAATCCcgtgttttatgtttttgttggtGTGAAATTCAGGAATCATCTAAAGGGGATTCTGCAGAAGATTTTTCAAACCCCACCGATCGTGGACATGCAACACACACGAACTGGCACCATTCAGTCCATGTGCTCAAACAGCAACAACTGCAGAAGCAATTCCACAACTATCTGAGTCAGTGTAAATATATGCATGAGTGATGTAAGTGATTTATCCGATGCTTAAATAGGTGGAGgttgaggctttttttttttaaataaagatataaagatataacatgtactgtacttttttaaaataatattaaaagtagATGTTTGGAGATTTTTCCTTAACTAAATGCAAATTTGAGATTTTATTTGATCCAGAACGACCATTAATTGCTTTTGAGAAAACCTAAGTTCATTGGTGCCTTATATAAAACCCCACAATCTCTTTCAAACGGTATTATAACGTTGTCTGGAGGAACATCATAAACATGCATAACTGGACATTAAAGGCATCTGATATAGTTTTGAGTGTACATTTCCATTGTGGACATCAAGTGAATGTGCTGTGTTTAGAGAACTCAGACTCCCCATTAGCAAACAAATGGACATagttttttttcaaaagtgATTCAAACTCAAGTCTATACTGGTAGCACATCCTACAGGATTATTCATGAAACCAAATTGCTTAgaattttgtttcattaaactacattttcattgttttcatcACAGCATTTTTTGTAAGCAGTAACTTTTAAcaggcaaaaataaaaccacatacGTACGCATTCAGGGAAACATTTAGGAGCAACTGTTATTAGCTGAATGGTAATTAGCTGAGCTCTTTACCACCAGTTCCCCTGTTGGTCTGATATAAAGGTTAAACCACATGATGACACGTTCGTTGATGTCTTCATTGGTAATTTGGAAGGTAACTGGGTTCTTTCTTACTATATTtttcacacatatatatgttataCTTCTATGAAAGAGAGAACTGTACTCTCTATTTGTGCATAAGGAATACATGTAGGTGTagttgtgaaatgttttataagCTAATCTTATGTTCTTTAcgtttttgcttgtttgttttgtatatattttagtttgtttaaatgtgtaatttCTAAAGCACTTTGGGCAATGCCA

Function


GO: NA

KEGG:

id description
K04193 XCR1; XC chemokine receptor 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026920920.2 True 2193 mRNA 0.38 2 21956247 21958696
XM_026920921.2 False 2147 mRNA 0.39 2 21955558 21958696

Neighbor


gene id symbol gene type direction distance location
abcg2a LOC108275736,LOC108435561 coding upstream 97699 21838989 ~ 21857859 (+)
fbxl5 fbxl5,LOC101481374 coding upstream 126935 21808314 ~ 21828623 (+)
syap1 syap1 coding upstream 148898 21799824 ~ 21806660 (+)
LOC113530955 ap1s2,zgc:162858,LOC108275964,LOC107564403,LOC107653210,LOC103463884,LOC106942561,LOC108435569,LOC106921341,LOC102795551,LOC107095773,LOC101477195,LOC104928285,LOC107752427,LOC107396045,LOC101174095 coding upstream 160187 21754847 ~ 21795371 (+)
LOC113530651 cdkl5,LOC108276197 coding upstream 207155 21674337 ~ 21748403 (+)
LOC113530693 LOC108275738 coding downstream 1731 21960427 ~ 21962912 (+)
LOC113530690 LOC108275738 coding downstream 4582 21963278 ~ 21966895 (+)
ndnf ndnf,LOC107669702 coding downstream 111739 22070435 ~ 22087209 (+)
prdm5 prdm5,LOC102798237 coding downstream 140057 22098753 ~ 22148588 (+)
LOC113530350 LOC108275518,LOC108435541 coding downstream 286799 22245495 ~ 22252789 (+)
G258883 NA non-coding upstream 203104 21750011 ~ 21752454 (+)
LOC113530300 NA non-coding upstream 353090 21600622 ~ 21602468 (+)
G258753 NA non-coding upstream 399120 21479232 ~ 21556438 (+)
G258758 NA non-coding upstream 444564 21499978 ~ 21510994 (+)
G258689 NA non-coding upstream 569457 21384291 ~ 21386101 (+)
LOC117599289 NA non-coding downstream 11682 21970378 ~ 21982618 (+)
G259086 NA non-coding downstream 47634 22006330 ~ 22006530 (+)
G259087 NA non-coding downstream 48012 22006708 ~ 22007039 (+)
G259093 cpeb2,LOC108276376 non-coding downstream 57415 22016111 ~ 22022472 (+)
G259094 NA non-coding downstream 67112 22025808 ~ 22026642 (+)
LOC117599233 NA other upstream 413131 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 716559 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1048099 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1441363 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1556844 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 712702 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1413048 23371744 ~ 23383653 (+)
G259993 NA other downstream 1428842 23387538 ~ 23389314 (+)
G260415 NA other downstream 2073531 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2309881 24268577 ~ 24269267 (+)

Expression



Co-expression Network