LOC113530693 (LOC108275738)


Basic Information

Item Value
gene id LOC113530693
gene name LOC108275738
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21960427 ~ 21962912 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920922.2
tttaatttaaatttgaaaGTTTGTCTAATTGCATGTGTTCATCTGTTGTATGATGATCAAGAGTacaagagcttcttttttttcaacaattatTACAACAACTTTGGAGAGAAACAAATGGATTTCCAAGAAAACAATATGGAACATGAGAATATGTTCTGGAAAGATAATCTGACTGACATCAAAGATGGACTGTGTCACAAGGAAGACGTGGCAAAAGTTGGATCCATCGTTGTCCCATTATTCTTCAGCATCGTGGTCTTGCTCAGTCTCATTGGTAACATCTTGGTTCTTGTGATTCTTGCGATATATGAGAATCTCAGATTGTTGACCAACATCTTCATACTGAACTTGGCCGTGTCGGACCTGCTGTTCACTGTCGGACTGCCGTTCTGGGCTTGTTACTACATCTGGGGTTGGACTCTTGGAGATGCAGCTTGCAAAGCTGTCTGCTTCGTCTTCTACGCTGGGTTTTACAGCAGCATCGTGTTCCTGATGCTGATGACCATTCAGCGCTACATGGCCGTGGTGTACCCTCTCTCGGACTGGGAAAAAGGACAGGGTTTTGCACTAATCCCTATCCTCGGCTGGGTGGTGAGCATCGCAGTGGCATTGCCAGCCCCACTCTACAGCTCTGCAATGCCTGATCCAGCAGATGCTTCAGAACTCTACTGTGAGTATAATTCCTTTCAGGCAGACCTTGCGCTTACGTACGAACAgaactctttttttgtttgcgCCTTTTTGATCATGGGTTTTTGCTATGTAAGAATTCTGCAGACCATCTTCAAGACACGACTGAACCAGAGACACCGTACTATCAGACTCATCTTCTGCATCGTAGTCGTGTTCTATATTGGTTGGGCTCCTTATAACCTGGTGATATTTTTACAAACGTTAACCCATCTTAAGGTCAAGTTTTTCATAGACTGCGATGTCACGCATCATCTTGACTATGCTGAATATGTCAGTAAACTGCTGGCATTTTCTCACTGCTGCCTTAATCCCGTGCTTTATGTTTTCGTTGGTGTGAAATTCAGAAATTATCTAAAGGAGATTCTGCAGAAGATTTTTCAAAGGCCACTCAACACGAGTACACCACAAACACGAACTGCTAACGCTCAGTCCCTGGGCTCCTTGTACTGATACTGCAACAACTGCAGAAGCAGTTATTGAGCTGTCTGATTCAGTGTAAATATGTTTGTAAatgatttatgcatttatttgtgCAATTTATTTGTGTACGTTtaggcattttttaaaaatgatggaCAAACTTTGTTGGATGAACATTTTGAGTCCACTGACAATGTTTCTTTGAAATGCTAATTGTGTCACAGTGTTCAAATGTGCTTAGAAGTATTTAtacacagaaatacagcaaGCCAGTTAAATTgcaaccttcaagattctgaagcttgtggccagaaaagtgtgcaAAAGCACTGATAAAGACCATGCAGGGGCACTTTGATATCAGGGACACCCATGGCAGCCATTTGCAGGGTTGTGATCAGAAGTGATGAACAGCATTTACTTTAAACGGTCCTTCAAAGCATATACTTTTCCCTAGGAATCCCAGATGCTTCACCTTTGGCCTACTTTACATTTCTGTCCgtgatttgaattttttaaatgtgacatGTATATAATTCAGATACAAAACTGAAATTCtaatacttttgtcagcttccaagTTTCATAATAGTGCAGCTGTtgtatatatgctatatatatgcTAGCTAACAGGGTTAGCTTGTCCAGCGTTAGCTTCCTTTTAATTTCCAGTAAGGCCATCACGGATGTGAAAGGGTGGAACTGTGTGCAACCACAAAGCAAAGCCATGAAAGCCGAGTTCTCATTAACCGTGTGGGCTGTCAGGTGCTGCAGAGGCTTGAGCAGCTGTTTCAGCTTGAgccattttcatatttaatttctggatggtgtgtgtgcaggtgtgtgtgtaatttagaaAATAACTGTGTCACAGATGCTGTAAATTTGAGTGCTTTATCTGATCTGGTTCTGTGAACCTCTGTGAAATGTCTGGAGGGTTCACTGGTCTTGCATTTCTtgtcttttcatatttttcGGTTtggtaataaaaaatgaaaaaaaaaaaaaatcacaaataaagaaataatgcagATTAAGGTCAAGAG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04193 XCR1; XC chemokine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920922.2 True 2162 mRNA 0.41 2 21960427 21962912

Neighbor

gene id symbol gene type direction distance location
LOC113530692 NA coding upstream 1731 21955558 ~ 21958696 (+)
abcg2a LOC108275736,LOC108435561 coding upstream 102568 21838989 ~ 21857859 (+)
fbxl5 fbxl5,LOC101481374 coding upstream 131804 21808314 ~ 21828623 (+)
syap1 syap1 coding upstream 153767 21799824 ~ 21806660 (+)
LOC113530955 ap1s2,zgc:162858,LOC108275964,LOC107564403,LOC107653210,LOC103463884,LOC106942561,LOC108435569,LOC106921341,LOC102795551,LOC107095773,LOC101477195,LOC104928285,LOC107752427,LOC107396045,LOC101174095 coding upstream 165056 21754847 ~ 21795371 (+)
LOC113530690 LOC108275738 coding downstream 366 21963278 ~ 21966895 (+)
ndnf ndnf,LOC107669702 coding downstream 107523 22070435 ~ 22087209 (+)
prdm5 prdm5,LOC102798237 coding downstream 135841 22098753 ~ 22148588 (+)
LOC113530350 LOC108275518,LOC108435541 coding downstream 282583 22245495 ~ 22252789 (+)
slc34a2b slc34a2,LOC108435540,LOC107710230,LOC107698513,LOC107549163 coding downstream 306789 22269701 ~ 22276968 (+)
G258883 NA non-coding upstream 207973 21750011 ~ 21752454 (+)
LOC113530300 NA non-coding upstream 357959 21600622 ~ 21602468 (+)
G258753 NA non-coding upstream 403989 21479232 ~ 21556438 (+)
G258758 NA non-coding upstream 449433 21499978 ~ 21510994 (+)
G258689 NA non-coding upstream 574326 21384291 ~ 21386101 (+)
LOC117599289 NA non-coding downstream 7466 21970378 ~ 21982618 (+)
G259086 NA non-coding downstream 43418 22006330 ~ 22006530 (+)
G259087 NA non-coding downstream 43796 22006708 ~ 22007039 (+)
G259093 cpeb2,LOC108276376 non-coding downstream 53199 22016111 ~ 22022472 (+)
G259094 NA non-coding downstream 62896 22025808 ~ 22026642 (+)
LOC117599233 NA other upstream 418000 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 721428 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1052968 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1446232 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1561713 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 708486 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1408832 23371744 ~ 23383653 (+)
G259993 NA other downstream 1424626 23387538 ~ 23389314 (+)
G260415 NA other downstream 2069315 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2305665 24268577 ~ 24269267 (+)

Expression


Co-expression Network