her9 (hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146)


Basic Information

Item Value
gene id her9
gene name hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 8957394 ~ 8959195 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920936.2
CGGCGTGTGGCAGAGGGAGACTCGACTCGCCTTGTGCGTACTCATATGACAGCTCGACTTTTAAGTGATAGCAGCTGGGACTTGTGCTCTCCCCCCCTGTGACCATCTCAACAGTTCGGTCACGTTTAGCATCCCGATCCTGCTGTTTGCAACACTTCCAACGGAATATACCAACTTTTTTCTTCTACGGACAAAAGTTTCAATAATGCCAGCTGATACTATGGAGAAACAGACAGCGTCTCCGATTGCTGGTGCTCCTGCAAGCGGAACACACACCCcggacaaaccaaagaatgcTAGTGAGCATAGAAAGTCTTCAAAGCCAATCATGGAGAAACGCCGCAGAGCAAGAATCAACGAAAGCCTAGGCCAACTCAAGACCCTCATTCTTGATGCTCTTAAAAAAGATAGCTCGAGACACTCTAAACTGGAGAAAGCTGATATTCTGGAGATGACAGTGAAGCACTTGAGGAACTTGCAGCGAGTTCAGATGACTGCAGCCATGTCAACTGACACCGCCGTCCTGAGCAAATACCGCGCAGGATTCAGCGAGTGCATGAACGAGGTGACGCGCTTTCTGTCCACGTGCGAAGGCGTAAACACGGAGGTGCGCTCGCGGCTCCTGAACCACCTGTCCGGCTGTTTGGGACAGATGATGGCCTTGAATTACCCGGCGGCTGCAGCAGCGCAGCATCCTCACCTAGCACAGCCTCTGAACGTGCAGCTTCCCTCCTCCGCAGTGAGCTCCAAGCTGAGCCCGTCGGAAGCGGTGCCGTCCAAAGTGTTCGGGGGCTTCCAGCTGGTGCCTGCCACTGACGGACAGTTCGCCTTTCTCATCCCTAACCCAGCGTTTGCCTCCGCTACCACCCCGGTCATCCCTCTCTACGCTAATGCCGGAGTTCCGGTGGCTGTCAGCGCGAGCCCTGTGCACGCGAGCTCGGCCCCGCCGGCGGTCTCCCCGGTGCAGGGCATGACCTCGTTCGCGGGCGTGTCGCAAGCCGCGAGTCCGGTTGGTGTGAGCGCGGGCCCGGAGAGCAGCGAGCCGGTGTGGCGGCCCTGGTAAACCTCCGTGCGTCACCAAGAACAAAAACTGTTGAGTTCCGTTTTATGGGACTGTTTTACGCTGTTGTTGAGCATGTTGTTCATGTTGAAATGTTACCTGTTTCCaatatttggatttgtttgatACATATTCTGTTAATTCGATAGAAAAAACACTCAGAAgtactttttattaaataatttagtttTGTACAAAGTTTGTAAAAGATGCCAAAGTGttattgtcatgttttcatttgaatGTTTGATGTTGAATAAACCTTAATAACAAAA
>XM_026920937.2
CCGGCGTGTGGCAGAGGGAGACTCGACTCGCCTTGTGCGTACTCATATGACAGCTCGACTTTTAAGTGATAGCAGCTGGGACTTGTGCTCTCCCCCCCTGTGACCATCTCAACAGTTCGGTCACGTTTAGCATCCCGATCCTGCTGTTTGCAACACTTCCAACGGAATATACCAACTTTTTTCTTCTACGGACAAAAGTTTCAATAATGCCAGCTGATACTATGGAGAAACAGACAGCGTCTCCGATTGCTGGTGCTCCTGCAAGCGGAACACACACCCcggacaaaccaaagaatgcTAGTGAGCATAGAAAGTCTTCAAAGCCAATCATGGAGAAACGCCGCAGAGCAAGAATCAACGAAAGCCTAGGCCAACTCAAGACCCTCATTCTTGATGCTCTTAAAAAAGATAGCTCGAGACACTCTAAACTGGAGAAAGCTGATATTCTGGAGATGACAGTGAAGCACTTGAGGAACTTGCAGCGAGTTCAGATGACTGCCATGTCAACTGACACCGCCGTCCTGAGCAAATACCGCGCAGGATTCAGCGAGTGCATGAACGAGGTGACGCGCTTTCTGTCCACGTGCGAAGGCGTAAACACGGAGGTGCGCTCGCGGCTCCTGAACCACCTGTCCGGCTGTTTGGGACAGATGATGGCCTTGAATTACCCGGCGGCTGCAGCAGCGCAGCATCCTCACCTAGCACAGCCTCTGAACGTGCAGCTTCCCTCCTCCGCAGTGAGCTCCAAGCTGAGCCCGTCGGAAGCGGTGCCGTCCAAAGTGTTCGGGGGCTTCCAGCTGGTGCCTGCCACTGACGGACAGTTCGCCTTTCTCATCCCTAACCCAGCGTTTGCCTCCGCTACCACCCCGGTCATCCCTCTCTACGCTAATGCCGGAGTTCCGGTGGCTGTCAGCGCGAGCCCTGTGCACGCGAGCTCGGCCCCGCCGGCGGTCTCCCCGGTGCAGGGCATGACCTCGTTCGCGGGCGTGTCGCAAGCCGCGAGTCCGGTTGGTGTGAGCGCGGGCCCGGAGAGCAGCGAGCCGGTGTGGCGGCCCTGGTAAACCTCCGTGCGTCACCAAGAACAAAAACTGTTGAGTTCCGTTTTATGGGACTGTTTTACGCTGTTGTTGAGCATGTTGTTCATGTTGAAATGTTACCTGTTTCCaatatttggatttgtttgatACATATTCTGTTAATTCGATAGAAAAAACACTCAGAAgtactttttattaaataatttagtttTGTACAAAGTTTGTAAAAGATGCCAAAGTGttattgtcatgttttcatttgaatGTTTGATGTTGAATAAACCTTAATAACAAAA

Function

symbol description
her9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of neurogenesis. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; neural plate; presumptive hypochord; and pronephros. Orthologous to human HES4 (hes family bHLH transcription factor 4).
hes4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
transcription factor HES-4-B-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09090 HESN; hairy and enhancer of split, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920936.2 True 1335 mRNA 0.52 4 8957395 8959195
XM_026920937.2 False 1333 mRNA 0.52 4 8957394 8959195

Neighbor

gene id symbol gene type direction distance location
arhgef19 arhgef19,LOC103150465,LOC106926263 coding upstream 405001 8533132 ~ 8552393 (+)
ano11 ano7l1,LOC107737547,LOC107716119,LOC107591089,LOC107593934 coding upstream 425723 8513140 ~ 8531671 (+)
plekhm2 plekhm2 coding upstream 448218 8493582 ~ 8509176 (+)
ddost ddost,LOC107673085,LOC107687429 coding upstream 466587 8483668 ~ 8490807 (+)
zbtb17 zbtb17 coding upstream 475243 8471131 ~ 8482151 (+)
perm1 NA coding downstream 47547 9006742 ~ 9021145 (+)
noc2l noc2l coding downstream 109510 9068705 ~ 9107223 (+)
ca6 ca6 coding downstream 452278 9411473 ~ 9417779 (+)
spsb1 spsb1,LOC103042472,LOC107716103,LOC107703063,LOC107687410,LOC107591103 coding downstream 510877 9470072 ~ 9489862 (+)
phc2a phc2,LOC108434472 coding downstream 720407 9679602 ~ 9728769 (+)
G251462 NA non-coding upstream 285155 8651601 ~ 8672239 (+)
G251463 NA non-coding upstream 323609 8629935 ~ 8633785 (+)
LOC117599296 NA non-coding upstream 357276 8597737 ~ 8600118 (+)
G251424 NA non-coding upstream 447747 8509434 ~ 8509647 (+)
G251418 NA non-coding upstream 473837 8483292 ~ 8483557 (+)
G251747 NA non-coding downstream 80000 9039195 ~ 9039398 (+)
G251760 NA non-coding downstream 115161 9074356 ~ 9074629 (+)
G251783 NA non-coding downstream 171756 9130951 ~ 9223205 (+)
G251782 NA non-coding downstream 261747 9220942 ~ 9231917 (+)
G251801 NA non-coding downstream 274018 9233213 ~ 9238533 (+)
LOC113530359 rnf223 other upstream 330369 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 511789 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 575211 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 619328 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 701246 8253674 ~ 8256148 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 1311608 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 1813476 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 1884416 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 1912834 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 2272183 11231378 ~ 11237367 (+)

Expression


Co-expression Network