gpx7 (gpx7,LOC107687580,LOC107562253,LOC102781798)


Basic Information

Item Value
gene id gpx7
gene name gpx7,LOC107687580,LOC107562253,LOC102781798
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24048016 ~ 24055524 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920938.2
TCTCAGCAACACTCCGTGGCGTTGCGTAGCAGCCGGCGGTCCTTCATGTTGTGAGAAGAAGCTGGAAGTTAACAGTTAAAGCGGAATCACAGAAGATGAAGGTTTTCCTGCGAGCGCTGCTCTTCTTCCTCCTGTCGTATTTCATGGAGGCGAAGCAGAAAGACTTTTACACGTTTAAGGTGGTGAACAGCAGAGGCAGATTAGTTTCTCTGGAGAAATACCGCGGCTCGgtcTCCTTGGTGGTAAACGTAGCGAGTGAGTGTGGCTTCACCCAGGAGCACTATACGGACCTGCAGCAGCTGCAGCGGGACTTTGGACCGTACCATTTCAACGTGCTGGGGTTCCCGTGTAATCAGTTTGGCCAGCAGGAGCCCGGCAGCGATAAAGAGATCGACAGCTTTGTGAGGCGCGTTTACGGAGTCTCGTTTCCGCTCTTCAGCAAAATCGCTGTGGTGGGGACCGGGGCCAACAACGCCTTTAAATACctcacagaggtGACTGGGAAGGAGCCTGACTGGAATTTCTGGAAGTATCTGATTGATGTTGATGGTAAAGTCGTCGGCTCGTGGGGTCCTCAAGTGTCCGTGAAGGAAATTCGGCCAAAGATTGCAGAGATGGTGCGCAAACTCATCATCAAACGCAAGGAGGAGctgtagagacacacacacgcacacacagacagacacacagacacacacacacgcgcacacacacacacgcacacacacacacacacacacacacacgtccatcCACATAAATTTCTTCAACAGAATGTAAAATGTGATACTAAATCAGCACTACTATGAAAaccactctcactcacacacacacacacacacacacacacacacacacacactcactcacactcacacactcacacacactcacacaaattaCCCAGAAGCAAAAAGGAACATATACCATATTTTCCGGATTATAAGACACATCGTTCGCTCTTTATAAATAATACCTTTTAACAGATATTATGATTTAGTGCACAGAGCTGCTGAgtgctgcattctgattggtcagaaggtgtgattagttttctagaacagcagctctgacagtagtgcagctgcaaatcacaggtgtcTATTAATGCACTGGTTCTGATACGTTTATGATAATAAATTGCAGTGCTGAAAAATAGCAACACTAACAGGAGAAAAACTAAACTAGCCTGCACCAGTAGGGGGCGCTGTTGAAAATTATTGCTACATGAATCCGATCTGTACAACAAAACCgttaatatacaatattttattgtttttaatgtaaattatagTCTGGAAAATTTGTTTCAGGAAAGACACTCCCCTAAACCACTAGCCCCGCCCTTTACCCTGACATCAACCATTcagagcttcacacacacacacacacacacacaccagccgcTGTCACACAGAAGAACGTCTAGCATCCATGAGGTGGACTGTGGACATGACACGACACGCTACGCCGTGTTTTTGTAGCGTTGTTGCTACTTTAGCTCTTCCTGATTGGAGCTTTCACGTTTCAGGAAGTAGGAGGAGCTCGTTTTGCTAATCTGTAGGTGTTTGAGATAATCTGagacatgtatgtaatgtgggCGGGGTTTTAGATAATAAAGAGAGGTGGGGGGAGGGGTCAGTTGTTAAAGGAACATTTCAgcgaaaaaaaaatgaaaatgtagccGATTAGCCGAGACACGTTTGCTAATTTAGTTTAGCGCTGTAGCTatgatgctaatgtagctaactagACTTGCTGATGTATAATGATGAACAAAACACTGTGTAGTCAAATGCTGACTCTTGTATCTTGTATAAagtggcggccatcttggaaaacCGAGATCACTTTTTCCATGGTGCAGTTTGGAAAGACTCCGCCTTCAATATTAGGCCCCGCCTCCAGGTTTAAAGTTGATGTTTAAAGCCTGATAGAAATGTTGATTAAGTCTacttttgatttcatttttctaaGTAAAGATGGCAATTTTACTCATCAGATTATAGATGGTTGAAGTGtggatgaaaacaaaaataaaataaaactaaataaaataaaaaaaagaagcaaatatCAGATAATAAACATGTCTCGGCTGATTAATTACATTTGGGTGCATTTTCTATTGTTGGCTTTATGTATAAAACCAGTCGAACGTTTGCACTCGATAGTCTGAATAAatacttttcactttttaaagacATTGTGATAAAAGCTTATGgttgaaatttgtttctaagacaaataaataaataaaaattaataaataaatca

Function

symbol description
gpx7 Predicted to enable peroxidase activity. Predicted to act upstream of or within response to oxidative stress. Is expressed in notochord and splanchnocranium. Orthologous to human GPX7 (glutathione peroxidase 7).

NR:

description
glutathione peroxidase 7

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004602 glutathione peroxidase activity molecular_function

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920938.2 True 2277 mRNA 0.42 3 24048016 24055524

Neighbor

gene id symbol gene type direction distance location
mcoln3b mcoln3 coding upstream 80130 23951660 ~ 23967886 (+)
syde2 syde2 coding upstream 126040 23888706 ~ 23921976 (+)
c16h1orf52 c15h1orf52 coding upstream 172629 23872817 ~ 23875387 (+)
ddah1 ddah1,LOC107570409,LOC106584046 coding upstream 183578 23809480 ~ 23864438 (+)
znhit6 znhit6 coding upstream 249987 23769235 ~ 23798029 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding downstream 35598 24091122 ~ 24131107 (+)
LOC113530931 LOC108275754 coding downstream 111196 24166720 ~ 24188371 (+)
cltrn tmem27 coding downstream 244072 24299596 ~ 24306661 (+)
mdp1 mdp1 coding downstream 256702 24312226 ~ 24315467 (+)
LOC113530532 LOC108275719 coding downstream 465355 24520879 ~ 24528915 (+)
G260410 NA non-coding upstream 17681 24023376 ~ 24030335 (+)
LOC117599260 NA non-coding upstream 35012 24010675 ~ 24013004 (+)
LOC117599261 NA non-coding upstream 44635 24002549 ~ 24003381 (+)
G260232 NA non-coding upstream 129625 23917881 ~ 23918391 (+)
G260217 NA non-coding upstream 178460 23867651 ~ 23869556 (+)
G260430 NA non-coding downstream 76194 24131718 ~ 24131958 (+)
G260431 NA non-coding downstream 80270 24135794 ~ 24140619 (+)
G260434 NA non-coding downstream 90466 24145990 ~ 24146339 (+)
G260409 NA non-coding downstream 103342 24158866 ~ 24161640 (+)
G260441 NA non-coding downstream 114846 24170370 ~ 24171029 (+)
G260415 NA other upstream 15292 24032227 ~ 24032724 (+)
G259993 NA other upstream 658702 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 664363 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1367474 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2505589 21538045 ~ 21542427 (+)
G260483 LOC108275756 other downstream 213053 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 345060 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 569413 24624937 ~ 24636129 (+)

Expression


Co-expression Network