cptp (cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044)


Basic Information

Item Value
gene id cptp
gene name cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20900122 ~ 20902771 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920955.2
GAGGGAACCATTTGTTAATCCGGAAGAAGGATACGGAATATGGGTAAAGAAAATAATCCAACGTTGAATTGAAACTGGTGATGGTTTATACAGCATTATTAGAGTAGCTACTTAGCTTATTAACTGATATGAATGATTTTgtaaaggtatttttttttttttctgacagctAATTGTAAATaatagtgttcagtgttcagtgtttttgtaTTCTGACTCGTTAATTCCAAAGACAGGATTACCTAGATAACTAGAATAACTAGAAATGGCAGATTCTTTCAGTCTACGGAATGTTCTGGAAAACTTCAAGTCATGTCTCAGTGATAATAAGGAAGTCTACATAAAGTACTATATATCAGGATGGCGAGAGCTTGTGAGCTTTATGAACAGCCTGGGAAGCgtcttctccttcatctccaAGGATGCAGTCAGCAAAATCCAAATCCTGGAGAACTTTCTGATGGGTGAGAATGGGACGCACTACCTCACCGTCCAGTCCATGGTGAAGTATGAGCTGGACAATGAGCTGGTGGATCTTACCAAACGAGGGAGCCATCCGGAGTCGGGCTGCCGCACATTACTGCGTCTCCACCGTGCCCTGCGCTGGCTGCAGCTCTTCTTGGAGAGTCTGCGCACCAGCACTGAGGACAGTAAGACCTCCGTCATGTGCTCCGAGGCCTATAATGCGTCACTGGCGCAGCACCACTCGTGGATCATCCGGAAAGCAGCTGGATTGGCGTTTTGCGCTCTGCCAGGCCGTGATGCATTCTTCGAGGTGATGAATGCAGGCAGCCATCAGGAGGTGATCACACTGTTGGGagaagctttacctctgatctCAGAAGTCTATCAGATCACAGAAGACCTGTATGCAAAAAACAAGCTGCTCGACTTACCCTAGAAGGTTCTACACTACTTGACATATTCCTTGGTTACTTGATATTACTGTGTGTTGTAGTGTATATATTCCTGCTATTCCTGTAACTTTCCAAATACACTGGGATATGatcacagtttattattataaaattaagaaatttgaatgtaatcacatatttattattgGTTAAAAGGGATATATTGAATGTACCTGAATCACTATTCTGTGAAATATATTCAGCACAGTTATGATAGACAGTATGTTTTACATATTTGAAATGTTAACCGTGTGTATCttaatgtacattatttttaaaaattttagttCTTTTTAGTAAGTTTTTAGTgaatcagatcatttgactcagctcaccAATCAGAGTCAACTCTTTCAATTCCCAAATGAATAATTGCCATTTTTTCTGAACTGGACAAAATTTCCAATATTATGAGCAgtgattgttttttctttgccaGACCATGGCTGAAATGGTTTAGTGAAATTATACTCTACCTATTAAACCCATTTGAATAATCCTAAATCAGCTAAATtctacaaaaacacactgatgaaaacAGTAAGAATCCATGTATTGGTATTGTACCCTGTTGTGTCTATGGTCCATTATAAAGATTTATTACCATTTATCCTGAAAACCAGTTGCATCCCCTAATAAACTACAATAAACTTACCTCTACACACAGCTACATAGCTGAGAGGCAAACACACGAATCATttggacaaacaaacagattacAATTTGAAAAATGGTTTCCATGGAAGCAGTGGTTACTGctgtttatatacatatatatatggcaGTTAGCTCTCAACATTCACCTAAAAGAGTTTactcaaagagtcgactcagaGTTGACTCACTCGTAAATGATACATCACTCATTCTACACCATTAttcatgtgtaaatgtttgttctGTATGTAAAGTTGAAACATCTTACTTGACCAAATAaccaaatagaaaataaatcactcaACCAGT

Function

symbol description
cptp Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in several processes, including lipid transport; negative regulation of NLRP3 inflammasome complex assembly; and negative regulation of interleukin-1 beta production. Predicted to act upstream of or within lipid transport. Predicted to be located in Golgi apparatus; bounding membrane of organelle; and plasma membrane. Predicted to be active in cytosol and membrane. Orthologous to human CPTP (ceramide-1-phosphate transfer protein).

NR:

description
PREDICTED: ceramide-1-phosphate transfer protein

GO:

id name namespace
GO:0046836 glycolipid transport biological_process
GO:1902389 ceramide 1-phosphate transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0017089 glycolipid transfer activity molecular_function
GO:1902387 ceramide 1-phosphate binding molecular_function
GO:1902388 ceramide 1-phosphate transfer activity molecular_function
GO:0051861 glycolipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920955.2 True 1883 mRNA 0.38 2 20900122 20902771

Neighbor

gene id symbol gene type direction distance location
LOC113530777 LOC108276216 coding upstream 13613 20883692 ~ 20886509 (+)
march9 march9,LOC107593952,LOC107599679 coding upstream 148251 20737744 ~ 20751871 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding upstream 170189 20719865 ~ 20729933 (+)
LOC113530407 gpr182,LOC108275868 coding upstream 208508 20689186 ~ 20691614 (+)
LOC113530755 gpr182,LOC108275868 coding upstream 213344 20684365 ~ 20686778 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 16317 20919088 ~ 20953971 (+)
fam43b fam43b coding downstream 94898 20997669 ~ 20999732 (+)
LOC113530567 LOC108275599 coding downstream 149899 21052670 ~ 21056506 (+)
cdaa cda coding downstream 157005 21059776 ~ 21062377 (+)
pink1 pink1 coding downstream 160324 21063095 ~ 21067217 (+)
G258362 NA non-coding upstream 109977 20786242 ~ 20790145 (+)
G258275 LOC108276173 non-coding upstream 143584 20682370 ~ 20756538 (+)
LOC117599266 NA non-coding upstream 188164 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 200454 20696985 ~ 20699668 (+)
G258273 NA non-coding upstream 219184 20663682 ~ 20680938 (+)
LOC117599282 NA non-coding downstream 6045 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 73127 20975898 ~ 20976359 (+)
G258460 NA non-coding downstream 182611 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 190558 21093329 ~ 21093844 (+)
G258483 iyd non-coding downstream 200943 21103714 ~ 21105101 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 385927 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 501408 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1195059 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1421227 19478302 ~ 19478895 (+)
pkig NA other upstream 1677563 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 334 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 325549 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 635274 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1768627 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2468973 23371744 ~ 23383653 (+)

Expression


Co-expression Network