LOC113530713 (dad1)


Basic Information

Item Value
gene id LOC113530713
gene name dad1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22742054 ~ 22744025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920957.2
GTGCGCATGCGCGTGGGTTAACGGGACACGTCAGGACGGAGCAGGGTTCGGTGGAAGCTGCACGAGCTGCTAGAATtcaactcagaaaaaaaatggcgaattctgtgatttctgtgatttcCAAGTTTATAGAGGAGTACGCTAGTAGCACGTCGGCTAAACTGAAGCTAGTAGACGCGTATTTGCTGTACATCCTGCTCACAGgcgctttccagtttctttatTGCCTGCTGGTTGGTACATTTCCGTTTAACAGCTTCCTGTCCGGCTTCATTTCCTGTGTGGGATCCTTCATCCTTGCAGTTTGTCTGCGTATCCAGATCAATCCTCAGAACAAAGCAGAGTTCTTATCCATCTCACCGGAAAGAGCCTTCGCCGACTTCCTTTTCGCCCACACCGTGCTCCACCTGGTTGTCATCAACTTCGTCGGTTGAAAGGATGCCCTTGTGAATGTGAAGTACATGATTGACTGAAGACTGAAGACCTTTCACCTCTAACAAAcgataa

Function

symbol description
dad1 Predicted to be involved in protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Orthologous to human DAD1 (defender against cell death 1).

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008250 oligosaccharyltransferase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12668 OST2, DAD1; oligosaccharyltransferase complex subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920957.2 True 507 mRNA 0.48 3 22742054 22744025

Neighbor

gene id symbol gene type direction distance location
LOC113530788 LOC108275601 coding upstream 7031 22721758 ~ 22735023 (+)
LOC113530513 NA coding upstream 25908 22709993 ~ 22716146 (+)
LOC117595661 NA coding upstream 43150 22693240 ~ 22698904 (+)
rabggta rabggta,LOC107680063 coding upstream 74925 22658099 ~ 22667129 (+)
stxbp3 stxbp3,LOC107565974,LOC107748431,LOC107680060 coding upstream 86010 22643527 ~ 22656044 (+)
gmeb2 gmeb2 coding downstream 1041 22745066 ~ 22755933 (+)
stk35 stk35,LOC108439475,LOC107590481 coding downstream 31706 22775731 ~ 22783461 (+)
LOC113530963 LOC108275977 coding downstream 90497 22834522 ~ 22851428 (+)
scube3 scube3,LOC108276393,LOC108439473,LOC106566910 coding downstream 115137 22859162 ~ 22951930 (+)
myl9a LOC108276062,LOC103022187,LOC108439470,LOC107737046,LOC107653232,LOC107569439 coding downstream 262541 23006566 ~ 23011461 (+)
G259403 NA non-coding upstream 156245 22584557 ~ 22585809 (+)
G259268 NA non-coding upstream 239149 22502687 ~ 22502905 (+)
G259267 NA non-coding upstream 260954 22480557 ~ 22481100 (+)
LOC117599300 NA non-coding upstream 511374 22227964 ~ 22230680 (+)
G259131 NA non-coding upstream 591255 22148905 ~ 22150799 (+)
G259498 NA non-coding downstream 95192 22839217 ~ 22841739 (+)
G259536 NA non-coding downstream 269359 23013384 ~ 23015896 (+)
G259539 NA non-coding downstream 277945 23021970 ~ 23022448 (+)
G259540 LOC108276061 non-coding downstream 282421 23026446 ~ 23064569 (+)
G259690 ctnnbl1,LOC106942865 non-coding downstream 533409 23277434 ~ 23277909 (+)
LOC113530514 LOC108275916 other upstream 61512 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1199627 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 1503055 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1834595 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 2227859 20510244 ~ 20514195 (+)
LOC117599309 NA other downstream 627719 23371744 ~ 23383653 (+)
G259993 NA other downstream 643513 23387538 ~ 23389314 (+)
G260415 NA other downstream 1288202 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 1524552 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 1656559 24400584 ~ 24453538 (+)

Expression


Co-expression Network