arhgef3l (LOC108276039,LOC108434749,LOC107712679,LOC107593396,LOC107699573,LOC107565836,LOC107737584)


Basic Information

Item Value
gene id arhgef3l
gene name LOC108276039,LOC108434749,LOC107712679,LOC107593396,LOC107699573,LOC107565836,LOC107737584
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10470499 ~ 10479864 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920976.2
CAGACATgtaagaggaagagaggaggtgTAGAGTTGGTAGCGCACACAAAAAATTCTGCTCTCTTACTTTCCCCGAAGAGGTGGGACAGGTGTTTGACAGACCCAGAGGACTGTAGAAATTGCATTTTGATCGTGTTTGGATTTGCTGGAGTGCTAATATCTAAAGATGTTATGAAAGATACAAAGATGGAGCTTGAAGAGACGGAGACCAATTTGTCACCTTCCTGGTCTCCTGTATCAAGAGAAAGACTCCTGACATGTGCCAACCTTTCTGAATTTGCAGGGaaaaaaaggaaacaggacCCAAGCAGTGATGCTGAATTTTCAGCCCGAGCCTCAGAAGACTATGATGAAGATGACTTTCCCACTGATCCCCCACACGACTCCGAGGGACCGTGTAACAAGAGGGTCAAACCAGTGGACAGAAGTAGTGGAGTTACAGGCATTATAACGCCAATGAAGACCCCTGCACTGAAACGGTTGGGACAGTCCATCCAGCGGTCCATCAGCTTCCGTACAGAAGCGCGGCCGATGCCACCGATGCCGATTCGGACTCGTCAGAAGGCTTCTTCTTTCCCACGGCGACGCAGCAGCCAGCTGTGGAGTGACACTGTGGACAGCCTGAGCCAGGATCTTAGTGCCAAAGAGATTAAGAGACAGGAGGTGATTTATGAAATGACCCAAGGAGAGAAGCAGTTGATAGAAGACCTCAATTTGGTCAAAAAGGTTTACTATGAGCCAATGCTGAAACTGGACATCATGACAGAAAGTGAACTGGGTCAGATATTTGGGACTCTCGACTCTCTGATTCCTCTCCATGAAGATTTTTTGGCTCGTCTGGAAGGGCTGCGAGGGTCGGAGAAGACAGTGGGGGAGGTTGGGCCGACCCTGCTGGACTGGTTCCCTTGCCTGGATGCCTATATCACATACTGCTGTAACCAAGTGGGTGCCAAAGCCCTGCTAGACCAGAAAAAGCAGGTACGGCGTGTTGAGGAGTTCCTCCGCTTGTGCCAAGAGTCATCCTTCAGCAGGAAACTGGACTTGTGGAACTTCCTGGATCTGCCACGCAGTCGTCTGGTGAAGTACCCACTACTTCTGAAGGAGATCCAGAAGAGTACGCCGCATGATCACCCTGATGAGGACACACTGCCTCAGGCCATGGAGCTAATCCAGAGCATCATTACTGAGGTGAACCGTAAGACAGGCGAGGCTGAGTGTCAGTTTTACAAACGAGGTCTGTGCTACCCAGAGGAGGGGCAAAGAGTTCCAGAGATTCATGCCTCACGCTTTCTCTACTGTCATGGTGAACTCAAGAGCACCAAAGGACAGAAGCTGCATGTGTTCTTGTTCGAGCTGGTGCTGGTTTTGACTCGCCCAGTCGTGCAGGACAAGGACGGCATGGTGCAGTTCCAGGTTTACCGTCAACCCTTACCTGCTGCCCAAATCCTGCTGGAGGACCTGCCTGATGGAGAGGCCAGCAGTTCTGGATCCTTCCGTGGTGCCTTCACTGGCAATGACAAAGTGAAGAACTGCTTCCGTGtgagcagcagggggcgcaCGAAGGCTCAGTCGCACAGCCTGCAGGCCAACGACTCCTTCAACAAGCAGCAGTGGATTTCCTGCTTGCGCCAAGCCATCATCCAGTCACGAGACAGAAATGCTCAGGCTAGCCAATCCAAGGCCCACCTAAGCCCTGAGCCCCCGCTCGACCACATCGCTGAACTGAGCCTCAATTCTGATGTGGAGATGATGGACACATAGGTCAGAGGTGACATCACGTTACAAGGACAAAGTTAATGTTCCCGGTTCATACCGTCACACCTTCTATGCAAGGAACTGATAAAGTTTACAAACTTTCTTATTATCAGAGTGAAAGGTATTTATATGAATGGCTGCCATGTTTAAGGCACAAAGCTGTGTATTACGGTTCCTCTGAGCCTAACCCTGTATGGTTAGACAGACTGAAGAATGTGTAAAGTGGTCCACTCACATCTGCTTTCTGATTGAGCAAGTAATTTTCTATTAGGCAATGAGTCCATGAGATCATTCCTGTTTCCTATGTAGCTTGTAGATTTATAATTAAGGCTCACAAACAGTAATTTGAATAGTATGATAATGATATACAGTGCATTATGCATTTAGTTACTGCTTGTCAGCAATGTGATAGTGTCTGATGTTGAATGTGAATGCCATTgcagaaatttttaaaaaaagacatttttattacaaactttTTTCCTCTGTTAAACTGACAGTGTTCATGTGAAGTTGATTTATCAAGTATGACAGGGTTTGACTATGACAGGGTAGCAGAGATGGAGCTATTCACTTATGAATTTTGGATTTCTGTgccataaataaatgttattcgATTGTCTATGGA

Function

NR:

description
rho guanine nucleotide exchange factor 3-like

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG:

id description
K19842 ROM1_2; RHO1 GDP-GTP exchange protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920976.2 True 2383 mRNA 0.48 13 10470499 10479864

Neighbor

gene id symbol gene type direction distance location
ccdc30 ccdc30 coding downstream 11691 10438844 ~ 10458808 (-)
si:ch211-112c15.8 NA coding downstream 49697 10412726 ~ 10420802 (-)
ttc34 ttc34 coding downstream 58970 10403177 ~ 10411529 (-)
megf6a megf6,LOC108276135 coding downstream 97803 10342798 ~ 10372696 (-)
emc1 emc1,LOC107593385 coding downstream 317777 10140734 ~ 10152722 (-)
uba1 uba1,LOC107737583,LOC107699604,LOC107593395 coding upstream 626 10480490 ~ 10496127 (-)
camkvl camkvl,LOC108275516,LOC106572974,LOC101077320 coding upstream 17854 10497718 ~ 10529717 (-)
adnpb LOC108275936 coding upstream 68526 10548390 ~ 10561471 (-)
dpm1 dpm1,LOC107712706,LOC107737709,LOC107671953,LOC106566454 coding upstream 82460 10562324 ~ 10568759 (-)
LOC113530527 col20a1,slc35c2,LOC108275935,LOC107699598,LOC107593422,LOC107565826,LOC107712705,LOC107699599,LOC107737589 coding upstream 90245 10570109 ~ 10619665 (-)
G252610 NA non-coding downstream 73759 10396395 ~ 10396740 (-)
LOC117599279 NA non-coding downstream 181815 10244041 ~ 10288684 (-)
LOC117599207 NA non-coding downstream 288611 10179788 ~ 10181888 (-)
G252479 NA non-coding downstream 414416 10054877 ~ 10056083 (-)
G252331 NA non-coding downstream 550351 9917429 ~ 9920148 (-)
G252783 NA non-coding upstream 175450 10655314 ~ 10655522 (-)
G252833 NA non-coding upstream 230531 10710395 ~ 10711491 (-)
G252856 NA non-coding upstream 299121 10778985 ~ 10779600 (-)
G252859 lrrc23 non-coding upstream 302271 10782135 ~ 10782588 (-)
G252920 NA non-coding upstream 385496 10865360 ~ 10865700 (-)
usp21 LOC108276040,LOC108432659 other downstream 703 10460694 ~ 10469796 (-)
G252373 NA other downstream 440506 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 698936 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 1891899 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2960708 7476205 ~ 7509791 (-)
sinup NA other upstream 156637 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 529599 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 540667 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 976156 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 1069530 11549394 ~ 11568603 (-)

Expression


Co-expression Network