bcl2l1 (bcl2l1)


Basic Information

Item Value
gene id bcl2l1
gene name bcl2l1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11344353 ~ 11369724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920982.2
ATAAACGCTCCTCTTGAGCAAGCAGGTTAGGTAGCTGGATAGCTGGCGTAGCTTTGCTAGGCTGCGGAGGTGGATTCGTGTAGGTTGAGCAAGAAATGTCGGATTTACAATCGGGCAGTGACTGGACTCCTGCTCAATATTTCGATCATGTGGGAGAGCGAGACGTAACGCTTTTACTGATCTGATGTCCAAGCCCTTGCACCATCCTTGATTGTATCTGTTTACGCCGGATAAGAAGCAGAGGAAATCAATGAAGATCAGAGGTCAACCTGGTTTAAGATCCGTGATGAGAGAGCCAGGGTCAGCACAAGTCTGAGTTAGAGACGCAAGCGTCTGTGTGCTGTTTTTCAGACACTGACGAGCAAGCAGGAGCGGTATCCAGCGCCAGATAAAAGACGTATCGCACGTAATTATGTCTTACTACAACAGAGAACTGGTCGTGTACTTCATCAAGTACAAGCTCTCCCAGAGAAACTACCCCTGCAACCACATCGGGCTCACGGAAGATGCGAATGGAACTGAGGGAGGCCAGGAGGAGGAAGTGCACGCAGAGGGAGCGGCAGAATTGGAGACGCCGACAGCAGTCGTTAATGGCTCCATAAACGGGACAGGTTCGGCAGGGACTCCTCCACGATCGCCGACTTTGTCCCCTCAGAGGCAGGTGAATGGTAGTGCAAGCCTGGAGGCAGTAAAGGAGGCACTGCGTGACTCGGCCAACGAGTTCGAGCTGCGCTATGCACGCGCCTTCAGTGACCTTTCTTCACAGTTGCATATCACTCCAGTCACGGTGTACCAGAGCTTTGAGAGTGTGATGGACGAGGTGTTCCGCGACGGTGTCAACTGGGGCCGTATCGTGGGCTTGTTCGCCTTCGGAGGTGCCCTCTGTGTCGAGTGCGTGGAAAAAGAGATGAGTCCGCTGGTGGCACGTATCGCTGAGTGGATGACCGTCTACCTGGACAACCACATCCAGCCCTGGATCCAAGAGCAAGGAGGATGGGAACGTTTCGCAGAGATCTTCGGGAAAGACGCAGCAGCAGAGAGCAGAAGGTCGCAGGAAAGCTTCAAGAAGTGGCTGTTGGCAGGGATGACGCTGTTCACGGGGGTGGTGGTGGGCTCCTTCATCGCTCAGAAGCGGCTGTAAAGATTACTGAAGACACAGCATCGGCCTCCACCCAGTATACACCTCAGACATACATGAAGGAACTTTTACCCtctgaaagtttttttgttttgttttgttttgtacttgttttgttttctttgccaAGAATTGTCATGTTTACACCCTCCTCCTGTCGCGGTGCACTGTGGACTGTGTGAGTGGCCCAAGCACAACTGTAAACTTCATATACACAGTCCCAACCTGGTGAAAGGGGACTTGTTACTTGGCCCAAAAGAGTGATATTGCTCAATATCATAAGACTTGCATTGCttaaatcaccttttttttttattttaaagaattgaTCACTTGTCAGAGACTGTCCAAATGGATCacttatttctgtttgttctttgttaaacaaaaaaaatcattattttctgctttagtctttttaaatatacacattattattttatcttcaAAGAGGACAGCAAGTAGCAATGATACAGATCTCATTTGAGAACTGAGTTTATAAGTGAAGTATCTACTCACAGGTTCTAGGTGGAGTCTCACTTCATGTTTTTGATCCTTCAGAGGCTTGTAGAATGGACTAGCAAACATGTTCAAAACCTTGCACTACAGTTCAAGTCCTTTCTGAGTCCACTGTGGGAGTTCTTCGCAATGTGGCCTCTTTCCCAGTAAGGGGCACTGAGGGGAAAAAGATTTGCTTAACTTTGGTCATTTTAGCAAGTAAATTCTGGGCAATTCTGTAGGTTAGTGTTGAGTTTCAGGCTAATTTACATCCAGAAAAATGCCCTGAAATGTTGAGTGTGATGCTACGTATGGGACAGAAGCTTTGTTAAAGCtattcatttttctaaatgACCAAGTGCTCTCTGAGATATGTGAGAGCCTGTTCGGATAAAAGAGCAACTAAGTTAAATTTctaagttaaattttttt
>XM_026920983.2
AAGATTCCTGTTCATTCTGGCTGTTTTCTCACACTTTACAGTAGATTCTAGAAAGCAGTTGTTAGAGATTGGTACTCCAGCTCTTGTACAATAAACCAACACAGAAGTTAGAGTGCTGAGAGTTCGTGTGGAGCCCGGACCGGATTTCCGTGTGGTGTCCAAGCCCTTGCACCATCCTTGATTGTATCTGTTTACGCCGGATAAGAAGCAGAGGAAATCAATGAAGATCAGAGGTCAACCTGGTTTAAGATCCGTGATGAGAGAGCCAGGGTCAGCACAAGTCTGAGTTAGAGACGCAAGCGTCTGTGTGCTGTTTTTCAGACACTGACGAGCAAGCAGGAGCGGTATCCAGCGCCAGATAAAAGACGTATCGCACGTAATTATGTCTTACTACAACAGAGAACTGGTCGTGTACTTCATCAAGTACAAGCTCTCCCAGAGAAACTACCCCTGCAACCACATCGGGCTCACGGAAGATGCGAATGGAACTGAGGGAGGCCAGGAGGAGGAAGTGCACGCAGAGGGAGCGGCAGAATTGGAGACGCCGACAGCAGTCGTTAATGGCTCCATAAACGGGACAGGTTCGGCAGGGACTCCTCCACGATCGCCGACTTTGTCCCCTCAGAGGCAGGTGAATGGTAGTGCAAGCCTGGAGGCAGTAAAGGAGGCACTGCGTGACTCGGCCAACGAGTTCGAGCTGCGCTATGCACGCGCCTTCAGTGACCTTTCTTCACAGTTGCATATCACTCCAGTCACGGTGTACCAGAGCTTTGAGAGTGTGATGGACGAGGTGTTCCGCGACGGTGTCAACTGGGGCCGTATCGTGGGCTTGTTCGCCTTCGGAGGTGCCCTCTGTGTCGAGTGCGTGGAAAAAGAGATGAGTCCGCTGGTGGCACGTATCGCTGAGTGGATGACCGTCTACCTGGACAACCACATCCAGCCCTGGATCCAAGAGCAAGGAGGATGGGAACGTTTCGCAGAGATCTTCGGGAAAGACGCAGCAGCAGAGAGCAGAAGGTCGCAGGAAAGCTTCAAGAAGTGGCTGTTGGCAGGGATGACGCTGTTCACGGGGGTGGTGGTGGGCTCCTTCATCGCTCAGAAGCGGCTGTAAAGATTACTGAAGACACAGCATCGGCCTCCACCCAGTATACACCTCAGACATACATGAAGGAACTTTTACCCtctgaaagtttttttgttttgttttgttttgtacttgttttgttttctttgccaAGAATTGTCATGTTTACACCCTCCTCCTGTCGCGGTGCACTGTGGACTGTGTGAGTGGCCCAAGCACAACTGTAAACTTCATATACACAGTCCCAACCTGGTGAAAGGGGACTTGTTACTTGGCCCAAAAGAGTGATATTGCTCAATATCATAAGACTTGCATTGCttaaatcaccttttttttttattttaaagaattgaTCACTTGTCAGAGACTGTCCAAATGGATCacttatttctgtttgttctttgttaaacaaaaaaaatcattattttctgctttagtctttttaaatatacacattattattttatcttcaAAGAGGACAGCAAGTAGCAATGATACAGATCTCATTTGAGAACTGAGTTTATAAGTGAAGTATCTACTCACAGGTTCTAGGTGGAGTCTCACTTCATGTTTTTGATCCTTCAGAGGCTTGTAGAATGGACTAGCAAACATGTTCAAAACCTTGCACTACAGTTCAAGTCCTTTCTGAGTCCACTGTGGGAGTTCTTCGCAATGTGGCCTCTTTCCCAGTAAGGGGCACTGAGGGGAAAAAGATTTGCTTAACTTTGGTCATTTTAGCAAGTAAATTCTGGGCAATTCTGTAGGTTAGTGTTGAGTTTCAGGCTAATTTACATCCAGAAAAATGCCCTGAAATGTTGAGTGTGATGCTACGTATGGGACAGAAGCTTTGTTAAAGCtattcatttttctaaatgACCAAGTGCTCTCTGAGATATGTGAGAGCCTGTTCGGATAAAAGAGCAACTAAGTTAAATTTctaagttaaattttttt
>XM_034312153.1
AAGATTCCTGTTCATTCTGGCTGTTTTCTCACACTTTACAGTAGATTCTAGAAAGCAGTTGTTAGAGATTGGTACTCCAGCTCTTGTACAATAAACCAACACAGAAGTTAGAGTGCTGAGAGTTCGTGTGGAGCCCGGACCGGATTTCCGTTGTCCAAGCCCTTGCACCATCCTTGATTGTATCTGTTTACGCCGGATAAGAAGCAGAGGAAATCAATGAAGATCAGAGGTCAACCTGGTTTAAGATCCGTGATGAGAGAGCCAGGGTCAGCACAAGTCTGAGTTAGAGACGCAAGCGTCTGTGTGCTGTTTTTCAGACACTGACGAGCAAGCAGGAGCGGTATCCAGCGCCAGATAAAAGACGTATCGCACGTAATTATGTCTTACTACAACAGAGAACTGGTCGTGTACTTCATCAAGTACAAGCTCTCCCAGAGAAACTACCCCTGCAACCACATCGGGCTCACGGAAGATGCGAATGGAACTGAGGGAGGCCAGGAGGAGGAAGTGCACGCAGAGGGAGCGGCAGAATTGGAGACGCCGACAGCAGTCGTTAATGGCTCCATAAACGGGACAGGTTCGGCAGGGACTCCTCCACGATCGCCGACTTTGTCCCCTCAGAGGCAGGTGAATGGTAGTGCAAGCCTGGAGGCAGTAAAGGAGGCACTGCGTGACTCGGCCAACGAGTTCGAGCTGCGCTATGCACGCGCCTTCAGTGACCTTTCTTCACAGTTGCATATCACTCCAGTCACGGTGTACCAGAGCTTTGAGAGTGTGATGGACGAGGTGTTCCGCGACGGTGTCAACTGGGGCCGTATCGTGGGCTTGTTCGCCTTCGGAGGTGCCCTCTGTGTCGAGTGCGTGGAAAAAGAGATGAGTCCGCTGGTGGCACGTATCGCTGAGTGGATGACCGTCTACCTGGACAACCACATCCAGCCCTGGATCCAAGAGCAAGGAGGATGGGAACGTTTCGCAGAGATCTTCGGGAAAGACGCAGCAGCAGAGAGCAGAAGGTCGCAGGAAAGCTTCAAGAAGTGGCTGTTGGCAGGGATGACGCTGTTCACGGGGGTGGTGGTGGGCTCCTTCATCGCTCAGAAGCGGCTGTAAAGATTACTGAAGACACAGCATCGGCCTCCACCCAGTATACACCTCAGACATACATGAAGGAACTTTTACCCtctgaaagtttttttgttttgttttgttttgtacttgttttgttttctttgccaAGAATTGTCATGTTTACACCCTCCTCCTGTCGCGGTGCACTGTGGACTGTGTGAGTGGCCCAAGCACAACTGTAAACTTCATATACACAGTCCCAACCTGGTGAAAGGGGACTTGTTACTTGGCCCAAAAGAGTGATATTGCTCAATATCATAAGACTTGCATTGCttaaatcaccttttttttttattttaaagaattgaTCACTTGTCAGAGACTGTCCAAATGGATCacttatttctgtttgttctttgttaaacaaaaaaaatcattattttctgctttagtctttttaaatatacacattattattttatcttcaAAGAGGACAGCAAGTAGCAATGATACAGATCTCATTTGAGAACTGAGTTTATAAGTGAAGTATCTACTCACAGGTTCTAGGTGGAGTCTCACTTCATGTTTTTGATCCTTCAGAGGCTTGTAGAATGGACTAGCAAACATGTTCAAAACCTTGCACTACAGTTCAAGTCCTTTCTGAGTCCACTGTGGGAGTTCTTCGCAATGTGGCCTCTTTCCCAGTAAGGGGCACTGAGGGGAAAAAGATTTGCTTAACTTTGGTCATTTTAGCAAGTAAATTCTGGGCAATTCTGTAGGTTAGTGTTGAGTTTCAGGCTAATTTACATCCAGAAAAATGCCCTGAAATGTTGAGTGTGATGCTACGTATGGGACAGAAGCTTTGTTAAAGCtattcatttttctaaatgACCAAGTGCTCTCTGAGATATGTGAGAGCCTGTTCGGATAAAAGAGCAACTAAGTTAAATTTctaagttaaattttttt

Function

symbol description
bcl2l1 Enables cysteine-type endopeptidase inhibitor activity involved in apoptotic process. Acts upstream of or within negative regulation of apoptotic process; thyroid gland development; and tissue homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Is expressed in several structures, including blood island; endocrine system; extension; immune system; and nervous system. Human ortholog(s) of this gene implicated in breast cancer; carcinoma (multiple); leukemia (multiple); and pancreatic cancer. Orthologous to human BCL2L1 (BCL2 like 1).

NR:

description
PREDICTED: bcl-2-like protein 1

GO:

id name namespace
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0001894 tissue homeostasis biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0030878 thyroid gland development biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K04570 BCL2L1, bcl-xL; Bcl-2-like 1 (apoptosis regulator Bcl-X)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920982.2 True 2068 mRNA 0.46 3 11344353 11369724
XM_026920983.2 False 2038 mRNA 0.46 3 11345536 11369724
XM_034312153.1 False 2034 mRNA 0.46 3 11345536 11369724

Neighbor

gene id symbol gene type direction distance location
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding upstream 2827 11310969 ~ 11341526 (+)
pard6b pard6b,LOC108436329 coding upstream 42350 11279829 ~ 11302003 (+)
trnaf-gaa_28 NA coding upstream 76670 11267611 ~ 11267683 (+)
ebp ebp,LOC107672060,LOC107712744,LOC107657016 coding upstream 79960 11260774 ~ 11264393 (+)
trnah-gug_14 NA coding upstream 84435 11259847 ~ 11259918 (+)
nsfl1c nsfl1c coding downstream 60114 11429838 ~ 11437645 (+)
trpc4apb trpc4ap,LOC107741324,LOC107737634,LOC107562468,LOC105890651,LOC107672047 coding downstream 74670 11444394 ~ 11453985 (+)
zgc:158296 LOC108275955 coding downstream 139778 11509502 ~ 11512493 (+)
ikbkg ikbkg coding downstream 146665 11516389 ~ 11528319 (+)
ssr4 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 coding downstream 160926 11530650 ~ 11533250 (+)
G253151 NA non-coding upstream 97491 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 98881 11244761 ~ 11245472 (+)
G252996 NA non-coding upstream 239826 11104139 ~ 11104527 (+)
G252966 NA non-coding upstream 304922 11038218 ~ 11039431 (+)
G252955 NA non-coding upstream 344533 10998081 ~ 10999820 (+)
G253210 NA non-coding downstream 979 11370703 ~ 11372352 (+)
G253212 NA non-coding downstream 3271 11372995 ~ 11376620 (+)
G253248 NA non-coding downstream 91990 11461714 ~ 11462757 (+)
G253301 NA non-coding downstream 359316 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 413184 11782908 ~ 11784064 (+)
oard1 oard1 other upstream 106986 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 430757 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 491825 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 564493 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 1001925 10270803 ~ 10342428 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 22710 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 100327 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 113695 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 224780 11594504 ~ 11640907 (+)
G253367 naca,LOC106571941 other downstream 522426 11892150 ~ 11900364 (+)

Expression


Co-expression Network