slc48a1a (slc48a1a,LOC108275665,LOC108425489,LOC103038309)


Basic Information

Item Value
gene id slc48a1a
gene name slc48a1a,LOC108275665,LOC108425489,LOC103038309
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17172192 ~ 17175513 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920984.2
GTAGTCAGAGAGCACGAGCAGAAGAAGTCGAGTTCTGTTTCTGAAACAGGGCTGCGGTATTACGTCATCATCACGGCGCTGGAATCTGCTGCCGAGTGTTTGGTCAAGACGCTGTTTAAatgtttagatattttttttaattaatccaCATATTATATAATTGTAAGATTTATGGCACCGAACAGGACGTACTTTAGCATTGCCTATGCTACATTTGGCATGCTGGTAGGAGTTTCGGCTTTTATAGTTTGGAATGCAGTTTACAGACAGCCGTGGACGGCGGCTATGGGCGGGTTATCAGGAGTGCTGGCCTTTTGGGTGCTGGTCACACACATCATGTACCTTCAGGATTACTGGCGCACATGGCTGAAGGGACTCAAGCTCTTCATGATTATCAGTTCACTTTTCTCCATGTTAGCTGTTGCTGCTTTTGCAACATTTATGACTCTGGCTATTACACAAAATCAAGCATTGTCGGACACCAAGAGTTTTTATCTGTCCTGTGTTTGGAGCTTCTTGACACTGAAATGGGCCTTCCTTCTTGGCTTATATTCTTACCGCTACCACCAGGAGTTTGCTGACATCAGCATCCTCAGTGACTTTTGAATAACTGCCTTTCTGGAACTGCAACGAGTTTGTTGTTGTCTGTTGGTAGATTTGTCTGTTAGTCAGGAGGTGGGTTTAGAAACAAGGCTTGTCAAACAGGAATAAATGGAacagtttttctttcacattaacACTACCATTGTTATTGTTAGGCTGTCTGTTATCTGTTAGCCTGTCCCTCGTACTCCAGAAAATCCAGCTTCAACTTCAGAAACCATCCTAGGAGGCCTCCTGCATCTATGCATTACATTCCTATTACATTTACCTGCATATAAATGTTGCCTGGTTTATATAATTCTGTTCAGGCTTCAAAGAACTTGTTTGACATAAAGAGTGTCCAGCTATTTCTAATAGCCAAGCTAGTTACataaatttaaatctttttggatttttttttgtcttttatttaatgttttatgtacAAAAATGCAATTACTTTATTTGTCTGCACTTAATATTAATTGCTCATGAGCACAGATTGAGAAATATCCATCTTTAGTGTAATTGACAAATGGGCGAGTTATCAGTTTTTGACACATGGCAACAAAATGCACTGATCACCAAATCCTGACTCATCCTCAAATGTCATGTTACTGGTGTTTCTATTTTAGTAGGACATACAGGTCTATGTGTATAAGACTATCagtattataatataaacaCTTAAACATAATTGAAAAGTCATCTAgatcaaatgttttattgtgtattgaATTTTCATTTGTGTAACATGGTACAATTACGTATATTATTGTTTAGAGTCTGTATATGGGtatacagtctcctctgaaagtattggaacgtcaaggccaattcttttgtttttgctat

Function

symbol description
slc48a1a Enables heme transmembrane transporter activity. Predicted to be involved in heme transport. Predicted to be located in endosome membrane and lysosome. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and plasma membrane. Is expressed in several structures, including blood; central nervous system; heart; liver; and pleuroperitoneal region. Orthologous to human SLC48A1 (solute carrier family 48 member 1).

NR:

description
heme transporter hrg1-B

GO:

id name namespace
GO:0015886 heme transport biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015232 heme transmembrane transporter activity molecular_function

KEGG:

id description
K15380 SLC48A1, HRG1; solute carrier family 48 (heme transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920984.2 True 1437 mRNA 0.38 3 17172192 17175513

Neighbor

gene id symbol gene type direction distance location
csrnp2 csrnp2 coding upstream 137916 17005065 ~ 17034276 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding upstream 211626 16936562 ~ 16960566 (+)
pou6f1 pou6f1 coding upstream 258120 16872863 ~ 16914072 (+)
bin2a bin2 coding upstream 325207 16830566 ~ 16846985 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding upstream 348345 16795300 ~ 16823847 (+)
hrct1 LOC108276455 coding downstream 14366 17189879 ~ 17194246 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding downstream 251789 17427302 ~ 17627058 (+)
si:dkey-261h17.1 NA coding downstream 473801 17649314 ~ 17676304 (+)
si:ch211-66i15.4 NA coding downstream 563758 17739271 ~ 17746529 (+)
LOC113530861 tshz2,LOC107758790,LOC107664189,LOC107729067,LOC107697876 coding downstream 1017684 18193197 ~ 18240912 (+)
G256331 NA non-coding upstream 63454 17106717 ~ 17108738 (+)
G256322 NA non-coding upstream 113695 17058192 ~ 17058497 (+)
G256319 NA non-coding upstream 117101 17054866 ~ 17055091 (+)
LOC113530783 NA non-coding upstream 121261 17048077 ~ 17050931 (+)
G256239 NA non-coding upstream 248789 16922911 ~ 16923403 (+)
G256405 NA non-coding downstream 22166 17197679 ~ 17197916 (+)
G256408 NA non-coding downstream 65375 17240888 ~ 17241933 (+)
G256425 NA non-coding downstream 90997 17266510 ~ 17266732 (+)
G256426 NA non-coding downstream 105807 17281320 ~ 17282500 (+)
G256448 NA non-coding downstream 152872 17328385 ~ 17328590 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 47241 17071136 ~ 17124951 (+)
G256046 NA other upstream 663812 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 775947 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 845578 16232013 ~ 16326614 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other upstream 942786 16210090 ~ 16229406 (+)
LOC113530386 slc26a9 other downstream 188 17175701 ~ 17188377 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 1703968 18879481 ~ 18934319 (+)
pkig NA other downstream 2022913 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2302789 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 2450016 19625529 ~ 19705063 (+)

Expression


Co-expression Network