cbx5 (cbx5,LOC103047453,LOC107714996,LOC107664188)


Basic Information

Item Value
gene id cbx5
gene name cbx5,LOC103047453,LOC107714996,LOC107664188
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20499278 ~ 20509708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920990.2
CTTCTGTAGTAAACAGAGTGGGATTTGGCATTCAGCCCGCATGCCTTGTGTgccattgtgtgtttttggcgCGCTGTAGccggtgctgtgtgtgtgagtgtgtgtgagtgtgtgtatatgcatgcatgcatgtgtgtgtgtggagggactCGTGTGGAGGGTTGTTGCCTTTGAGAGCATCGAAGAAGACCTCTGTGGGTGACGTTTGTGCCGCAGGTTTAAACAGCAATAATAACATCAGACCCAGTTGGCTTGCTTTGAAATAGGAGCATAGAGGGATCCTTTCCCTtcctcactcagtcactctgtTACTTGTGAGTGGAAAAGAAGGCATTTGAAGCAGCCATGGGAAAGAAGAATCAGAACCGTGAAGATGACGAGTCTGCGTCCACAGACGAAGAGGAATACGTGGTGGAGAAGGTCTTGGACAGGAGGGTAGTAAAGGGCCGAGTGGAGTACTATCTTAAATGGAAAGGTTTTTCAGACAAACACAACACATGGGAGCCAGAGAAAAATCTCGACTGTCCAGATCTCATCGCCGAGTTCATGAAGACATACAAAAAGGGCGGCAGCGGTACAAGCACTCCAAGCAGCGGGACCAAACCATCCAGTGCAACTCCCACTCGCGCCAAAGACGCCGGCAACAAGAGGAGAAACTCAGACGAAGAAGAGGAGGGCGGCAGTAAGCAGAAGCGGAAAAAAGAGGATGAGATCCTAGTTGCAAGAGGCTTCGAGAGAGGCCTGGAGCCAGAGAAGATCATTGGTGCAACCGACTCTTGTGGGGACCTTATGTTCTTAATGAAGTGGAAAGACTCGGACGAGGCGGACCTTGTGCTTGCAAAGGAGGCCAATCACAAGTGTCCCCAGATCGTCATTGCTTTCTACGAAGAGCGTCTCACTTGGCATGAGGAtggagagaagaaggagaagggtGCTGCAGCTGTGTAAGGGTACAATCCCCTCCTAGAGACAGACACGAGTGCACTCACAATCCGTCCTTTGTTATGGACCATTTTAAAACCACCACTGGCCTCCTGGCATTAGAGGTCACTTCCCACCTTCTTTAGTCTCCTTTCATCTCCCATATAAACGGCAACTCTTTATCAATGTCTCAAGTATTGAGGGATGAGCGAGTAATTGAGAACTATGCCAAGAGCTTGGGAAATGGAGATGTTAGACTGATGGAATCACATGGATAGTGTTTTTACCCTGTTATTCTTGCAGAGCTTCACCCTCTTTTTCATGTTTCAAGTATTTGTGTcccaatgtttttcttttttttttttctccctgtgtgtgttgaCTCGATAGTTTAGATTCCATACAGCAGTTGGTGAAATATATTGAGACAgctgatatttttttaagtgttttatcaGAGAGTGTTATGTATCTGCAGTGCTGGATTAGTCATaccagtggttttttttttttttttacatttttttttccctccagatTAGATGACCTTTCTGGTGTATTCCTCACATCAGTGATAATTGTCTCTCTGTCCTGAGAATGTAGGACTACCTTGATTATGAATTTCAAAATCTGGAATCTGTTTACTAGACATGAAgcatttatccattttttttaaattttttttttttttttttttacaaagcaaATTTCTTCCCAAACATAGAAATCTGAACATGCCCAGGTTTTAAACAATGTGCTTCTCGCAGCTGCTTATGCTCAAACCAATGTATGGGGACAGACAATCATCACTTTTGTTAATGCCTGTGTTTTGCTTTGAGCTTGTGAGGGCATGCATCTGTGATGTTCATAAGTGCTCCACCTTGTGGCCATTTGCTGAGCATTTACTTTTACGGAGGCCAATAGTTTCAACCGCAAAGGGCTGTTGTGGCTAAAGACTTTAATTCCAGCCACATAGAAGTCACACCTAATAGTCACTTAAAGAACAAGTGAAACTGGTTGTGGCCTGTGTTTGGAGTGAAAACCTGTAGCCACACCGGGCTTTTGTGGATAAAATTGAAAGACCCCTAACATAGGCTGTGACCATGTTACTACCGCTTCTGTCCCCACCAAGGTTCAATTCTCagttttaaacaggaagtgaatcaaagcTGAACCTGTTCTTAATGAGGTTATGAGCTCAGGTGTGTAATTCTGTGTTTGTAGAGCCACTGGACAAATAATTTTAACCCAATAAACTTCCTGACTTTCATTAACATGACCGAGCTActgattctgattaaaaaaagtcgAACCGTACATCATGGAGAATGTAATCAGATGAAAAGAACTGACACttgtttttcaattttcattttcttagcttttcttcttttatgtCTCTGAAGCAGGCGGTAGCCCCTTTAAAACTCACAGATGGGTCATGTTTAGACAACAAGGTGAAATGTTGTGAACAGACTTCATCAGATGTGCTATGGACTGCTCTGATTAGATACTGTAATGaccgtgtgtctgtgtgtgtgtgtagtttaagtCCCAATTAGAgaagtctgttttatttttcttttcagatttcTGGAGGGAAATGACTATTGCCTACCTGTCAATGCATTTGTCTATATATCACTTTCAAATGTACGGCCtgactttttgttctctttATCTCATGTTATGGAAGTACCCTCCCATTTCTGATCATTTCATCACATATTCATGTGTTTTCAGAATAAGATTTTGATGTCTTTTACCTATAGATTTTTTAATGTCTTGTATCAAATTGTAGTAAACATAGTTTTCCACACGAATTTGatagtttttcattttaaagccacAATACTGACGTTTTGATAGTTAAAGACAGAATTTAATCAAAACATGTTTGCATCAATACAGGTGAATTTTGGTTCATAAGTTTAAGAACACAGGTTTAACCTTTCCAGCAGATGGTGCTATTCGGCTACACTCTTATGTACAGACCAAATCTCAATGCAGCCCATAATATCATATCAAAATGTGCTGGTGTTGGATGTTATTTGTTGAACTGATTACTTGTATTGGTGTAGAGAACTGTAAATTTTCCTATTAAAAACTGAGATCATtgagcagcaaaaaaaaaa
>XM_026920991.2
CACTTCTGTAGTAAACAGAGTGGGATTTGGCATTCAGCCCGCATGCCTTGTGTgccattgtgtgtttttggcgCGCTGTAGccggtgctgtgtgtgtgagtgtgtgtgagtgtgtgtatatgcatgcatgcatgtgtgtgtgtggagggactCGTGTGGAGGGTTGTTGCCTTTGAGAGCATCGAAGAAGACCTCTGTAGGGATCCTTTCCCTtcctcactcagtcactctgtTACTTGTGAGTGGAAAAGAAGGCATTTGAAGCAGCCATGGGAAAGAAGAATCAGAACCGTGAAGATGACGAGTCTGCGTCCACAGACGAAGAGGAATACGTGGTGGAGAAGGTCTTGGACAGGAGGGTAGTAAAGGGCCGAGTGGAGTACTATCTTAAATGGAAAGGTTTTTCAGACAAACACAACACATGGGAGCCAGAGAAAAATCTCGACTGTCCAGATCTCATCGCCGAGTTCATGAAGACATACAAAAAGGGCGGCAGCGGTACAAGCACTCCAAGCAGCGGGACCAAACCATCCAGTGCAACTCCCACTCGCGCCAAAGACGCCGGCAACAAGAGGAGAAACTCAGACGAAGAAGAGGAGGGCGGCAGTAAGCAGAAGCGGAAAAAAGAGGATGAGATCCTAGTTGCAAGAGGCTTCGAGAGAGGCCTGGAGCCAGAGAAGATCATTGGTGCAACCGACTCTTGTGGGGACCTTATGTTCTTAATGAAGTGGAAAGACTCGGACGAGGCGGACCTTGTGCTTGCAAAGGAGGCCAATCACAAGTGTCCCCAGATCGTCATTGCTTTCTACGAAGAGCGTCTCACTTGGCATGAGGAtggagagaagaaggagaagggtGCTGCAGCTGTGTAAGGGTACAATCCCCTCCTAGAGACAGACACGAGTGCACTCACAATCCGTCCTTTGTTATGGACCATTTTAAAACCACCACTGGCCTCCTGGCATTAGAGGTCACTTCCCACCTTCTTTAGTCTCCTTTCATCTCCCATATAAACGGCAACTCTTTATCAATGTCTCAAGTATTGAGGGATGAGCGAGTAATTGAGAACTATGCCAAGAGCTTGGGAAATGGAGATGTTAGACTGATGGAATCACATGGATAGTGTTTTTACCCTGTTATTCTTGCAGAGCTTCACCCTCTTTTTCATGTTTCAAGTATTTGTGTcccaatgtttttcttttttttttttctccctgtgtgtgttgaCTCGATAGTTTAGATTCCATACAGCAGTTGGTGAAATATATTGAGACAgctgatatttttttaagtgttttatcaGAGAGTGTTATGTATCTGCAGTGCTGGATTAGTCATaccagtggttttttttttttttttacatttttttttccctccagatTAGATGACCTTTCTGGTGTATTCCTCACATCAGTGATAATTGTCTCTCTGTCCTGAGAATGTAGGACTACCTTGATTATGAATTTCAAAATCTGGAATCTGTTTACTAGACATGAAgcatttatccattttttttaaattttttttttttttttttttacaaagcaaATTTCTTCCCAAACATAGAAATCTGAACATGCCCAGGTTTTAAACAATGTGCTTCTCGCAGCTGCTTATGCTCAAACCAATGTATGGGGACAGACAATCATCACTTTTGTTAATGCCTGTGTTTTGCTTTGAGCTTGTGAGGGCATGCATCTGTGATGTTCATAAGTGCTCCACCTTGTGGCCATTTGCTGAGCATTTACTTTTACGGAGGCCAATAGTTTCAACCGCAAAGGGCTGTTGTGGCTAAAGACTTTAATTCCAGCCACATAGAAGTCACACCTAATAGTCACTTAAAGAACAAGTGAAACTGGTTGTGGCCTGTGTTTGGAGTGAAAACCTGTAGCCACACCGGGCTTTTGTGGATAAAATTGAAAGACCCCTAACATAGGCTGTGACCATGTTACTACCGCTTCTGTCCCCACCAAGGTTCAATTCTCagttttaaacaggaagtgaatcaaagcTGAACCTGTTCTTAATGAGGTTATGAGCTCAGGTGTGTAATTCTGTGTTTGTAGAGCCACTGGACAAATAATTTTAACCCAATAAACTTCCTGACTTTCATTAACATGACCGAGCTActgattctgattaaaaaaagtcgAACCGTACATCATGGAGAATGTAATCAGATGAAAAGAACTGACACttgtttttcaattttcattttcttagcttttcttcttttatgtCTCTGAAGCAGGCGGTAGCCCCTTTAAAACTCACAGATGGGTCATGTTTAGACAACAAGGTGAAATGTTGTGAACAGACTTCATCAGATGTGCTATGGACTGCTCTGATTAGATACTGTAATGaccgtgtgtctgtgtgtgtgtgtagtttaagtCCCAATTAGAgaagtctgttttatttttcttttcagatttcTGGAGGGAAATGACTATTGCCTACCTGTCAATGCATTTGTCTATATATCACTTTCAAATGTACGGCCtgactttttgttctctttATCTCATGTTATGGAAGTACCCTCCCATTTCTGATCATTTCATCACATATTCATGTGTTTTCAGAATAAGATTTTGATGTCTTTTACCTATAGATTTTTTAATGTCTTGTATCAAATTGTAGTAAACATAGTTTTCCACACGAATTTGatagtttttcattttaaagccacAATACTGACGTTTTGATAGTTAAAGACAGAATTTAATCAAAACATGTTTGCATCAATACAGGTGAATTTTGGTTCATAAGTTTAAGAACACAGGTTTAACCTTTCCAGCAGATGGTGCTATTCGGCTACACTCTTATGTACAGACCAAATCTCAATGCAGCCCATAATATCATATCAAAATGTGCTGGTGTTGGATGTTATTTGTTGAACTGATTACTTGTATTGGTGTAGAGAACTGTAAATTTTCCTATTAAAAACTGAGATCATtgagcagcaaaaaaaaaa
>XM_034312053.1
AACCAGTTTTACGCTGCAGGGGTGACGTTTGTGCCGCAGGTTTAAACAGCAATAATAACATCAGACCCAGTTGGCTTGCTTTGAAATAGGAGCATAGAGGGATCCTTTCCCTtcctcactcagtcactctgtTACTTGTGAGTGGAAAAGAAGGCATTTGAAGCAGCCATGGGAAAGAAGAATCAGAACCGTGAAGATGACGAGTCTGCGTCCACAGACGAAGAGGAATACGTGGTGGAGAAGGTCTTGGACAGGAGGGTAGTAAAGGGCCGAGTGGAGTACTATCTTAAATGGAAAGGTTTTTCAGACAAACACAACACATGGGAGCCAGAGAAAAATCTCGACTGTCCAGATCTCATCGCCGAGTTCATGAAGACATACAAAAAGGGCGGCAGCGGTACAAGCACTCCAAGCAGCGGGACCAAACCATCCAGTGCAACTCCCACTCGCGCCAAAGACGCCGGCAACAAGAGGAGAAACTCAGACGAAGAAGAGGAGGGCGGCAGTAAGCAGAAGCGGAAAAAAGAGGATGAGATCCTAGTTGCAAGAGGCTTCGAGAGAGGCCTGGAGCCAGAGAAGATCATTGGTGCAACCGACTCTTGTGGGGACCTTATGTTCTTAATGAAGTGGAAAGACTCGGACGAGGCGGACCTTGTGCTTGCAAAGGAGGCCAATCACAAGTGTCCCCAGATCGTCATTGCTTTCTACGAAGAGCGTCTCACTTGGCATGAGGAtggagagaagaaggagaagggtGCTGCAGCTGTGTAAGGGTACAATCCCCTCCTAGAGACAGACACGAGTGCACTCACAATCCGTCCTTTGTTATGGACCATTTTAAAACCACCACTGGCCTCCTGGCATTAGAGGTCACTTCCCACCTTCTTTAGTCTCCTTTCATCTCCCATATAAACGGCAACTCTTTATCAATGTCTCAAGTATTGAGGGATGAGCGAGTAATTGAGAACTATGCCAAGAGCTTGGGAAATGGAGATGTTAGACTGATGGAATCACATGGATAGTGTTTTTACCCTGTTATTCTTGCAGAGCTTCACCCTCTTTTTCATGTTTCAAGTATTTGTGTcccaatgtttttcttttttttttttctccctgtgtgtgttgaCTCGATAGTTTAGATTCCATACAGCAGTTGGTGAAATATATTGAGACAgctgatatttttttaagtgttttatcaGAGAGTGTTATGTATCTGCAGTGCTGGATTAGTCATaccagtggttttttttttttttttacatttttttttccctccagatTAGATGACCTTTCTGGTGTATTCCTCACATCAGTGATAATTGTCTCTCTGTCCTGAGAATGTAGGACTACCTTGATTATGAATTTCAAAATCTGGAATCTGTTTACTAGACATGAAgcatttatccattttttttaaattttttttttttttttttttacaaagcaaATTTCTTCCCAAACATAGAAATCTGAACATGCCCAGGTTTTAAACAATGTGCTTCTCGCAGCTGCTTATGCTCAAACCAATGTATGGGGACAGACAATCATCACTTTTGTTAATGCCTGTGTTTTGCTTTGAGCTTGTGAGGGCATGCATCTGTGATGTTCATAAGTGCTCCACCTTGTGGCCATTTGCTGAGCATTTACTTTTACGGAGGCCAATAGTTTCAACCGCAAAGGGCTGTTGTGGCTAAAGACTTTAATTCCAGCCACATAGAAGTCACACCTAATAGTCACTTAAAGAACAAGTGAAACTGGTTGTGGCCTGTGTTTGGAGTGAAAACCTGTAGCCACACCGGGCTTTTGTGGATAAAATTGAAAGACCCCTAACATAGGCTGTGACCATGTTACTACCGCTTCTGTCCCCACCAAGGTTCAATTCTCagttttaaacaggaagtgaatcaaagcTGAACCTGTTCTTAATGAGGTTATGAGCTCAGGTGTGTAATTCTGTGTTTGTAGAGCCACTGGACAAATAATTTTAACCCAATAAACTTCCTGACTTTCATTAACATGACCGAGCTActgattctgattaaaaaaagtcgAACCGTACATCATGGAGAATGTAATCAGATGAAAAGAACTGACACttgtttttcaattttcattttcttagcttttcttcttttatgtCTCTGAAGCAGGCGGTAGCCCCTTTAAAACTCACAGATGGGTCATGTTTAGACAACAAGGTGAAATGTTGTGAACAGACTTCATCAGATGTGCTATGGACTGCTCTGATTAGATACTGTAATGaccgtgtgtctgtgtgtgtgtgtagtttaagtCCCAATTAGAgaagtctgttttatttttcttttcagatttcTGGAGGGAAATGACTATTGCCTACCTGTCAATGCATTTGTCTATATATCACTTTCAAATGTACGGCCtgactttttgttctctttATCTCATGTTATGGAAGTACCCTCCCATTTCTGATCATTTCATCACATATTCATGTGTTTTCAGAATAAGATTTTGATGTCTTTTACCTATAGATTTTTTAATGTCTTGTATCAAATTGTAGTAAACATAGTTTTCCACACGAATTTGatagtttttcattttaaagccacAATACTGACGTTTTGATAGTTAAAGACAGAATTTAATCAAAACATGTTTGCATCAATACAGGTGAATTTTGGTTCATAAGTTTAAGAACACAGGTTTAACCTTTCCAGCAGATGGTGCTATTCGGCTACACTCTTATGTACAGACCAAATCTCAATGCAGCCCATAATATCATATCAAAATGTGCTGGTGTTGGATGTTATTTGTTGAACTGATTACTTGTATTGGTGTAGAGAACTGTAAATTTTCCTATTAAAAACTGAGATCATtgagcagcaaaaaaaaaa

Function

symbol description
cbx5 Predicted to be located in nucleus. Is expressed in somite. Orthologous to human CBX5 (chromobox 5).

NR:

description
chromobox protein homolog 5-like

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11587 CBX5, HP1A; chromobox protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920990.2 True 3056 mRNA 0.41 6 20499278 20509706
XM_026920991.2 False 2980 mRNA 0.41 5 20499278 20509708
XM_034312053.1 False 2879 mRNA 0.41 6 20499278 20508696

Neighbor

gene id symbol gene type direction distance location
calcoco1a LOC108275893 coding downstream 212065 20274622 ~ 20287213 (-)
nr1d4a LOC108276259,LOC108433411 coding downstream 277165 20205272 ~ 20222113 (-)
mfsd5 mfsd5,LOC107664134,LOC107594050,LOC107599659,LOC107599644 coding downstream 297533 20198866 ~ 20201745 (-)
jph2 jph2,LOC108275945,LOC104967021 coding downstream 319588 20155949 ~ 20179690 (-)
tuba1c tuba1c,LOC108255233,LOC103148207,LOC108275946,LOC107707017,LOC102311436 coding downstream 357223 20138780 ~ 20142055 (-)
znf740b znf740,LOC107714993,LOC107664257,LOC107599665,LOC107706997 coding upstream 47896 20557604 ~ 20566597 (-)
csad csad,LOC107599458,LOC107706996,LOC107697858 coding upstream 58081 20567789 ~ 20577934 (-)
zgc:174906 NA coding upstream 70899 20580607 ~ 20586424 (-)
spryd3 spryd3,LOC107714925,LOC107664113 coding upstream 103960 20613668 ~ 20658178 (-)
LOC113530420 zbtb39 coding upstream 182098 20691806 ~ 20698192 (-)
G258232 NA non-coding downstream 11868 20470193 ~ 20487410 (-)
G258198 hoxc5,hoxc6,hoxc6aa,LOC102238163,LOC107593966 non-coding downstream 97018 20376338 ~ 20402260 (-)
LOC117599243 NA non-coding downstream 126098 20364055 ~ 20373180 (-)
LOC113530344 NA non-coding downstream 167667 20314362 ~ 20331611 (-)
G258003 NA non-coding downstream 355029 20144025 ~ 20144249 (-)
G258189 hnrnpa1,LOC108275986,LOC108275985,LOC107707002,LOC107697928,LOC107598948 non-coding upstream 1458 20511166 ~ 20516713 (-)
G258242 NA non-coding upstream 12844 20522552 ~ 20523645 (-)
G258258 NA non-coding upstream 80050 20589758 ~ 20593161 (-)
G258268 NA non-coding upstream 100603 20610311 ~ 20611059 (-)
G258411 NA non-coding upstream 266441 20776149 ~ 20776709 (-)
G258077 rarg other downstream 227371 20252170 ~ 20271907 (-)
mlh3 mlh3 other downstream 379329 20109782 ~ 20119949 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other downstream 390066 20100999 ~ 20109212 (-)
LOC113530994 NA other downstream 395367 20103774 ~ 20103911 (-)
magi3a magi3,LOC108275952 other downstream 877665 19483093 ~ 19621613 (-)
nfe2 nfe2 other upstream 8717 20518425 ~ 20525464 (-)
LOC117599256 LOC103359731 other upstream 319680 20829388 ~ 20868004 (-)
camk2n1b camk2n1,LOC107664141 other upstream 463689 20973397 ~ 20976330 (-)
G258580 map7 other upstream 659278 21168986 ~ 21169698 (-)
trnaq-uug_7 NA other upstream 844731 21354439 ~ 21354697 (-)

Expression


Co-expression Network