ppp1r3da (LOC108275498,LOC108438215)


Basic Information

Item Value
gene id ppp1r3da
gene name LOC108275498,LOC108438215
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14151427 ~ 14153632 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921005.2
TCGGATCGGAAGTTTATGGTGAGACGATATGATATGACGCACAAACTGCTTCCCGGTGACATTTCACAGATATGTGGCATTACTGAGCTAGCGAAAAACTTGAAAAAGGGTGTAGGAAAGCTTTGTTGTACCCTGGATATGGCTTGTTCTACCACACACAGCCAGGAAAATACATCCTCAGGAGAATCAGATGATGAGCTATTTTTTGTTGGGGTGTCGGATATCTCAAAGCAAGCTTCCCGTCTTAACCTTAGCGACAAACCATGGTCAAACCCcaaaggagagagaaagcatgTGAAGATTCTTCCACCTAGTCCCACGGTGCCACAACTGAGACCGACAGGCCGCAGTTTCTCCTGTGAACCTCCTCCCAAACCCATCATCCAGCGCCGGACCCAGTCTCTGCCGTCGCCTTCAGAAAGGCGGAGGCTCAGTCGGAGAATCGGGGTCCGGTTTGTGGACTCACTGGGAATGGACCTCGAAAATGTTAAGGTTTTCAAAAGTGGAGAAGACCCGTTTGTGCCAGAACATGTTCTGTTTAGACTTTTGATGAACGCAGAACTCGCAGCCAACAAGAGCTTGGAGATTTCCCTACCCTATTTGAAACCTGTGTTCACTGAGCAACCTGGTGACTGTTCCAAGTTCCTGGAACGTTTGTGTAACCAGAAAGTGTGCCTGGAACGTGTTTTATGCTACGAGCCCGGCATCATTGGGATTGTCCAAGTGGTCAACCTGGCCTTCGAGAAAGAGGTGATCATTCGGTACTCTTTCACAAACTGGAAGAGCTGTGCTGAAAACAAGGCTTACTGGGTTGCCAATAAATACTTTGAAGGCCTTTCCAGTGGATGTAGCTGTGACAGTTTTCGGTTCCATCTTCCAGTTCCACCGTTCATCCTACACCCTGGAGCAGTGCTGGAGTTTGCGATCTGTTATAAAGTGCAGGGCACTCAGTTTTGGGACAACAATGAGGGACAAAATTACAAGTTAGTCTGCCAGAGCTACAAAATCCCTGTGCCCAAGGAATGTGAAGATAGCATGATACATTTTGTCTGAGTGCTCTACTGAGTcattgtatgtactgtatacactCAGTGGCCACTTTATTCACTACACCTGCCTTTTTATTTGGTAAAATTATATGCTGTAGAtgcactttgtaggtatacGTTTAGTGAAtgtacacctttttttttttaatgcactatTTGTTAATCAGCTTTTCATTAGCGTAAAGGGATTATCACAGGGCAATCTCTGAcaagatattatttgggtggtggaccaTTCTCAGCATATCAGTTATACTAACGTGGTAATGGTGGTGGCACAgttttgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtggtatTGGTAGGAGTGTCTCAGGCGCAGAAGTATTGCTTAGGTTTTAGCACTATGTACACTtaacctaataaagtggtcactgAGTGTCCGCTATTCACCAGCAcatgtttactttattaaaatcGAGTTACAATCTGTTTGCCAAATCATCTGACATAGTTGTTGAAAGAGTCAGGACTCAGGTATCCAAATAACTATCATGACTATGTACTTTTGCAGTTCTATACAGCTGTGCCACCAGTCTGACTTTTTGTCACAGAGCAAAATATGAGTGCAGTGTTTGTTTAACTTGTTGTTAAACTACTGAGTAGAATGTAGGCTATATTcctttttctttacaaaaattATGAGTTATAAACCTCTAAATCACTATTTGCCAAATCCTCTTTTATCTGAAGTGCCTGAGAAATGGTTATAAGTCACAAAATTACATTAAACTCACAGTTTTGTATACTAAGCAATAAATTCTTTACTCTA
>XM_026921006.2
ACCGATTCAAAGAGCCGACTCCTTCGCGAGTCACCTCACTAGTGTGTTCCCGTTTGGCAGTATACTTCTGCAGGCTTTGCGCAGTTTGTGAGAGCAATGTCCCAGACTTATGTTGTGCAGTTTAACATACATGACCTTCATTGTTTTGCCAGcgatgtaatatataaacactacTGAAGGATCTGCAGATGAAAGAAATAGCAAAATACATCGGATCGGAAGTTTATGGTGTAGGAAAGCTTTGTTGTACCCTGGATATGGCTTGTTCTACCACACACAGCCAGGAAAATACATCCTCAGGAGAATCAGATGATGAGCTATTTTTTGTTGGGGTGTCGGATATCTCAAAGCAAGCTTCCCGTCTTAACCTTAGCGACAAACCATGGTCAAACCCcaaaggagagagaaagcatgTGAAGATTCTTCCACCTAGTCCCACGGTGCCACAACTGAGACCGACAGGCCGCAGTTTCTCCTGTGAACCTCCTCCCAAACCCATCATCCAGCGCCGGACCCAGTCTCTGCCGTCGCCTTCAGAAAGGCGGAGGCTCAGTCGGAGAATCGGGGTCCGGTTTGTGGACTCACTGGGAATGGACCTCGAAAATGTTAAGGTTTTCAAAAGTGGAGAAGACCCGTTTGTGCCAGAACATGTTCTGTTTAGACTTTTGATGAACGCAGAACTCGCAGCCAACAAGAGCTTGGAGATTTCCCTACCCTATTTGAAACCTGTGTTCACTGAGCAACCTGGTGACTGTTCCAAGTTCCTGGAACGTTTGTGTAACCAGAAAGTGTGCCTGGAACGTGTTTTATGCTACGAGCCCGGCATCATTGGGATTGTCCAAGTGGTCAACCTGGCCTTCGAGAAAGAGGTGATCATTCGGTACTCTTTCACAAACTGGAAGAGCTGTGCTGAAAACAAGGCTTACTGGGTTGCCAATAAATACTTTGAAGGCCTTTCCAGTGGATGTAGCTGTGACAGTTTTCGGTTCCATCTTCCAGTTCCACCGTTCATCCTACACCCTGGAGCAGTGCTGGAGTTTGCGATCTGTTATAAAGTGCAGGGCACTCAGTTTTGGGACAACAATGAGGGACAAAATTACAAGTTAGTCTGCCAGAGCTACAAAATCCCTGTGCCCAAGGAATGTGAAGATAGCATGATACATTTTGTCTGAGTGCTCTACTGAGTcattgtatgtactgtatacactCAGTGGCCACTTTATTCACTACACCTGCCTTTTTATTTGGTAAAATTATATGCTGTAGAtgcactttgtaggtatacGTTTAGTGAAtgtacacctttttttttttaatgcactatTTGTTAATCAGCTTTTCATTAGCGTAAAGGGATTATCACAGGGCAATCTCTGAcaagatattatttgggtggtggaccaTTCTCAGCATATCAGTTATACTAACGTGGTAATGGTGGTGGCACAgttttgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtggtatTGGTAGGAGTGTCTCAGGCGCAGAAGTATTGCTTAGGTTTTAGCACTATGTACACTtaacctaataaagtggtcactgAGTGTCCGCTATTCACCAGCAcatgtttactttattaaaatcGAGTTACAATCTGTTTGCCAAATCATCTGACATAGTTGTTGAAAGAGTCAGGACTCAGGTATCCAAATAACTATCATGACTATGTACTTTTGCAGTTCTATACAGCTGTGCCACCAGTCTGACTTTTTGTCACAGAGCAAAATATGAGTGCAGTGTTTGTTTAACTTGTTGTTAAACTACTGAGTAGAATGTAGGCTATATTcctttttctttacaaaaattATGAGTTATAAACCTCTAAATCACTATTTGCCAAATCCTCTTTTATCTGAAGTGCCTGAGAAATGGTTATAAGTCACAAAATTACATTAAACTCACAGTTTTGTATACTAAGCAATAAATTCTTTACTCTA

Function

NR:

description
protein phosphatase 1 regulatory subunit 3D-like

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921005.2 False 1862 mRNA 0.43 2 14151427 14153422
XM_026921006.2 True 1981 mRNA 0.43 2 14151427 14153632

Neighbor

gene id symbol gene type direction distance location
pigt pigt coding downstream 65373 14072159 ~ 14086054 (-)
haus8 haus8 coding downstream 90980 14055402 ~ 14060447 (-)
sac3d1 sac3d1 coding downstream 97255 14050444 ~ 14054172 (-)
mrgbp mrgbp coding downstream 103198 14042572 ~ 14048229 (-)
eef1a2 eef1a2,LOC108276238,LOC107724190,LOC107705720,LOC108429306,LOC107696983,LOC107551525,LOC107693560 coding downstream 108960 14035800 ~ 14042467 (-)
ttll9 ttll9 coding upstream 8894 14162526 ~ 14172104 (-)
edn3b NA coding upstream 23594 14177226 ~ 14197008 (-)
chl1a LOC108276120 coding upstream 124462 14278094 ~ 14322302 (-)
ppp4r2a ppp4r2,LOC108276138,LOC107551500 coding upstream 322043 14475675 ~ 14484107 (-)
tns2a tns2,LOC107681375 coding upstream 420260 14573892 ~ 14614655 (-)
G254567 NA non-coding downstream 451022 13700009 ~ 13700405 (-)
G254600 NA non-coding downstream 454807 13692797 ~ 13696620 (-)
G254599 NA non-coding downstream 485954 13664893 ~ 13665473 (-)
G254587 NA non-coding downstream 536764 13614428 ~ 13614663 (-)
G254568 cables2 non-coding downstream 560457 13590500 ~ 13590970 (-)
G255020 NA non-coding upstream 377193 14530825 ~ 14532588 (-)
G255306 NA non-coding upstream 722012 14875644 ~ 14878506 (-)
G255403 NA non-coding upstream 1026754 15180386 ~ 15180640 (-)
G255385 NA non-coding upstream 1028525 15182157 ~ 15227960 (-)
G255435 NA non-coding upstream 1178494 15332126 ~ 15332451 (-)
LOC113530423 LOC108276099 other downstream 846 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 867542 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 1217119 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 1983632 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 2292081 11838796 ~ 11859346 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 545640 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1104853 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 1504704 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 2494191 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 2634169 16787801 ~ 16838649 (-)

Expression


Co-expression Network