LOC113530738 (si:ch73-290k24.6,LOC108275467,LOC106608414,LOC107396729,LOC106510918)


Basic Information

Item Value
gene id LOC113530738
gene name si:ch73-290k24.6,LOC108275467,LOC106608414,LOC107396729,LOC106510918
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21202490 ~ 21212264 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921015.2
TCCCGTCCATGTAATCCCTGTCCTGCAGTCTCTCTATCcgcttttttattatatatatatttatatattatcagCGGGGCCTTTCCGCCTCTTTTTTCACGCTTAGCGCGTCGCAGGCGCTCCCGGTTTGGCCGTTAATCCACCGCGAGCGCCATGTTCATGCAGACGCGGGGAGCAATGGCGCATCGGGACCATGGCGAGGCGCAGGCTCGGGAGGATGGAGAGAGCAGCAGGAATTAGAGACGTCGGACGGCGCGGCTTTGAGAATCGGAATGGGTCGGAAGGGCACTCGTCTGCGCGCGGAACGATGGCTGTGGCAGAACGTATAAAGAGCAGCATCCTTCACCAGACACCCTGATTGCAAGGAGGCTTGTTGGCCACTGTTGCCACGGCAGCGGTCgtggaggaagagaaggagcgGCTGTTGCGGTGGCGCCACGCTCTGCTGGAGGGGATGGAGTACCACAGCACGGGAACCCTGCCGCTCCTGGGCAGCCCGCGTTACTGTCCCGGTGCCAACAGTGCCAGCGGGTACCTCTGCCAGACGGGCCACTGCTGTGGGGAGACCGGCTGCTGCACTTATTACTACGAGCTGTGGTGGTTTTGGCTCTTATGGAGTGTATTGATCCTGTTCAGCTGCTGCTGTGCGTATCGACACCGCCAGGCTAAACAGAgagtgcagcagcagcagaggcagagagagatcAACCTGATGGCCTACCACGGAGCCTGCAGCTACCCGTCCTCCATGCTGGACCTCAGTTTCCTTGCATCACTCAAACTGCCATCCTATGAGGAAGTAGCGGCGCAGCCCAGCACCCCGCCCCCTCCCTACAGCTCGGTGGCTTACCCACGAGGCTCCGCCCATCCCGGGCCAAGTCACATGCTGTCCTCGCAGAGCTCTGACAACTACACCAGCTGCTCATGCGACTCCTGCTGCCCGTCTTCGCCCTGTAGCTCCTCCCCTTCCTCCGCCCAGCTCACAGACGAGACTGACACTAGCCACACCTCCACGCCTTCTCACAGCGAAGCGGTACCCATTAACTCAGTTTCTGGACGTGCCACAGAGCAACACTCTGAGACTCTTTCGACTCCGCCTCTTAATGAGCCTGGCCCCACCTCCTCAGCAGAAGTGATGGAGGTGGACTTGCCAGACTCCGCCTCCCTCGACTGTAATGGCAACAGGACTGTTAAAACAGTCACTAATCCAACAGTTAACAACAACGTGATCAGTGACGCTGAAGAAAGTGCTAACTCGAATGAAACTGGTAACGTGACTCAAATTAGTAACTCAAATGATGTTAATAACCGCAGCATCACTGAAAGCTCTAACGTACCTCAGTGTAACAACACTAATGATATTAGCAGCAAGGGTCAAGTGTCCAACCTCAGTCCTACCAGAGACGATAAAACCACTGACTTCGACCTCTTTCATCCACCCAGCAATATGTCCCAAAATACATCTTATCCTCCCATCGCCATCCCCTCATCCTCTCCTCCATCCTGTTCTCCTTTGTCTCCGtcctctcctcccctccctcctcccttaTCCCCGATCTCTGACCCTCTAGGCGCCATCTCTGAGCAGCAGAGCTCTCCTGTGCAGTGGGCGGAGccaacacagacacaccatTCAGCCCCTCACCCACAGTCTCCGCCCAAACCTGCAGTCTTTTCACCCGACTTCCTGGAGCCGGAGCGGCGTGATTCGGCAGTGTGCGATCTTGACGTGGATCAAACGCACTTCCAGCAGCGCCGCCTAACCGGAGACTCCGGGATTGAGGTCTGCCGCTGTCGGATCAACCATGatggggaggaggaggaagacgaTGAAGACGAAGAGAGGGATCGTTTAGAGGACAAGCCTAGCGCTGTTACAAGTGACGACCTCCACGACAGCGCCGACTGCTCCGTACGTGCCCAGCTCTCCCCTTCTGAGCTCGGAGACACGTGCGGGTCCGGATCAGCCACGCCGGCGCGCAGCGATACGGTCGTTATAGCCATGGAAACCGTTTGACGGACAGGTGGGCTGTTGAAATCCAGCATACAAGGGCTGTGCGTCAGCGGTGCTGAGAGAGCCTTCGGCTGTGCAAAGTGGATTGCCATTTAGTCCGAGTCTAAACTAGCCGTGCTGTTGCATTAGGACTGACATCGTAGGGTGGTGAAAAGTGAACCTCTAACTTAATAGCATAGCATAGGAaggtctctctatctctccctcttactctctctctctgttgtagGATAAATGTCCTCAGTTCTCCAGTGCTTAACAAAAAGCCTGTTTTTGTGCTAACAGAGAGACTGACATTAGAGCCACAgactctgctctaacacacacccacacactctcacactcaaacacacagtaACCTTTGTGTATGACCTCGTCTGGGATGGTGACATGGTGGTACAACAACACCATGTTCCTCTGTGAACTCAGTAGCACATGCAACAACCAACACCCccccatctctctatctctctatctatctctctcgccctctctctcGTTTCTCGGCTTGCATCATAGCCTCTGACGCAGAATCAGAGATCTAGTCTACTAGATCTAGTGTCGTACACATCGATAGATTATGAAGATGCTTGAACCGTTTGGTTTAAACGCTGCCGACAGTAAAGATGcaataacacactctaacacacacacacacacacacacacacatctgtcctGTGTGCCTCTGGGTAGTGTAGTTCACACCAGGTCAGACAGCCATTTTGTGCTTGATGTTAATCGGAGCTTATCAGCTGAATGTAGGTTCCTCACTGGTTCACGcaaagcaacacacactctctctctctctctctctctctctctctctctctcacacacacacacacatccaaaacACCAGACTGCATTCTTCTTGTTTTCCCAGAGTTTCAGAACACCAGCTTGGCCAAACAAATGCTGCACCTCAATcatggaagaagaaaaaaaaaaaagaaaaacctcaggacattgtttttttgttgttttcgtttttaattttattagcattttctTACGTCTAAATGTGGAAACACGGAAACAGCATTGCTCATTGGCGACACAAAAGCAGCCTAAAGACTCTCCGAACTGCTCTCCAACGAAGACAAATATCAATATGggaaaaacacatacaaataaatatatatgtaggtgcagaaaatatatatatatatatgctctcTGTGAAATGATATATTTTCTAAGCATGCCATGTCATTTGGAGTGCAGCACTAGAAGctggtgtaaaaatgtaatccGCGgctgagagatgtgtgtgtcgATTCTAGTGTTACTATGGCATCAGTACCGAGTTACACTTACATTACTATGGCGTTCCCATGGTGCTGCCGTGGCGTTACTATGACAACCTTCTTTAGTCTGAGCAATAGAGTATGTTTGATGTCCCTGTGAGATTGTGAAAGGTGTGAAAATGTTATTCTTACCACTAAACAAGTCAACTGAAA

Function

symbol description
si:ch73-290k24.6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human WBP1 (WW domain binding protein 1).

GO: NA

KEGG:

id description
K24775 WBP1; WW domain-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921015.2 True 3476 mRNA 0.51 5 21202490 21212264

Neighbor

gene id symbol gene type direction distance location
si:ch73-217b7.1 map7 coding upstream 30564 21138225 ~ 21171926 (+)
agmat agmat,LOC102790280,LOC105912720 coding upstream 129433 21068173 ~ 21073057 (+)
pink1 pink1 coding upstream 135273 21063095 ~ 21067217 (+)
cdaa cda coding upstream 140113 21059776 ~ 21062377 (+)
LOC113530567 LOC108275599 coding upstream 145984 21052670 ~ 21056506 (+)
egr4 LOC108275472,LOC107734701 coding downstream 13077 21225341 ~ 21227743 (+)
LOC113530257 LOC108275533,LOC108435580,LOC107565311,LOC107570205 coding downstream 29982 21242246 ~ 21257288 (+)
LOC113530283 LOC108276019 coding downstream 63166 21275430 ~ 21287608 (+)
LOC117599257 NA coding downstream 97811 21310075 ~ 21312795 (+)
ttc29 ttc29 coding downstream 103117 21315381 ~ 21323223 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding upstream 70437 21115050 ~ 21132053 (+)
G258462 NA non-coding upstream 94475 21107347 ~ 21108015 (+)
G258483 iyd non-coding upstream 97389 21103714 ~ 21105101 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding upstream 108646 21093329 ~ 21093844 (+)
G258460 NA non-coding upstream 114268 21085382 ~ 21088222 (+)
G258680 NA non-coding downstream 142176 21354440 ~ 21354730 (+)
G258689 NA non-coding downstream 172027 21384291 ~ 21386101 (+)
G258753 NA non-coding downstream 266968 21479232 ~ 21556438 (+)
G258758 NA non-coding downstream 287714 21499978 ~ 21510994 (+)
LOC113530300 NA non-coding downstream 388358 21600622 ~ 21602468 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 295031 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 688295 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 803776 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1497427 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1723595 19478302 ~ 19478895 (+)
si:ch73-290k24.5 LOC108275473 other downstream 16056 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 325781 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1459134 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2159480 23371744 ~ 23383653 (+)
G259993 NA other downstream 2175274 23387538 ~ 23389314 (+)

Expression


Co-expression Network