LOC113530755 (gpr182,LOC108275868)


Basic Information

Item Value
gene id LOC113530755
gene name gpr182,LOC108275868
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20684365 ~ 20686778 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921045.2
AGACTAAAGCAGCACCATTCTTCAGCCAGATCAGCCTTCATTCCTCCAGGATACTGCTTTATCAAAGGGGTTTTACCTTCACAACAGCTCCATAAGGGCGAGAAAATGAACCTCGATCACAACACATCAGACCACAATGAAACACTGTGGTTCTATGAATGTACCCTCAACCTGGACCGGGAATCTCGGCGCATTGCACTGTTCCTGCTCTACCTGTTCCTGTTCATGGTTGGTTTGTTGGAGAACTGTCTGGTGATTTGGGTAAACTGGCGTCGGCGACACTCGGCCAGTGGTGTACTCTTCTGTGTTATCAACATCAGTCTGTCTGACCTGATGGTGGTTTTCACTATGCCATTCTTCATGCTGGAGATCGCTATGGATGAGGTTTGGGTTTGGGGCCGATTCCTGTGCAAGGTTACGCACCTCATCTACGTCATTAATTTCTACAGCAACTCCTTCTTCCTTGCCTTCATGACTCTGGAGCGGTACCTGACCTTAACACGGCCAACCACGCCCGCCTGCTTTCCACTGCAACCCAGGCACCGGCGATGGCTGCTGTGTGCTGGAGTGTGGCTTCTGTGCTTGGTGCTGGCACTGCTAGAAAATGTACATGTGGACCTGCTTGAGTGGAATGAACCAGGGTGCTACATGATACCTGAGAATAACTTCAGTGAgtggtttctctctcttgccTTCTTCTCCCTTATCTTTCAGTTTTTGGGCCCTGCGTCGGTCATCATCACCTGTAACATCCTGATTGCACGGGTCGTGCATGCCTCTCCGGACAtccaaaatcacagagatctATGGATTTTGCGTGTGTACTCACTTGTCTTTGTGGCCTGCTGGCTACCCTACCATGTTGTGATGTTCCTGCTGGTGGTGGATATCCTGGACCCATATCTGATGTCCTGCAATACTATCGACAGCTTGTTCTTCTCTATGGGCGTTGTACAGTGCATCTCACTCTTCCATTGCATTGCCAACCCCATTCTCTATAGCTTCCTGAGCAAGAGCTTTCGTGCCAATCTCATCAGCGATATCCTTTCCCGTATTTCCTCACCACCATTCAGCAGTGCAGCCAATGCAGCTGGTGGTATGGGGAGGTCACAGCAGAAGGAACAAAAGCTCAGCAATGCCAGCACCAGTCACTCAGAGATAGGATCCTAATAAGGGAAGTTCCCATTAGGTCATAATGAGGTCTCCTGAGAGAGATGGGGAAGCAGTGCATATTGGAGCTTCACCTATTCTGTGCTGCTGTGCAGAAATAagtttcatttgtgttttgaCACCTCCACATAGCTAAGGAGACTATTTCAgaattattcacatttttttggtttggtaTTATGGTACCTTCTAAAGTACTGCCAATTTCTCAGTGCAAGGACTCATAGGCATTCAGAAAGAACATTTTAAGAAactaaattgtttgtttttattgactGTAAACTGTGGAGCTGGAAGGTCCAGTGGTGTCAAATGTCCATGTAAAGATGTCCATGTAAAGGTTAGGGGTTCCTGTTAGTAGTtttaaaacaggaaagaaaaaatctcCCTGCATCCCACTCCACAGGAAGCGATGGCATTACTACTGAGGAACATGCCACATGCCACAGACTAAAGGAAATGTAGCAATCAAACATTTCCAGATGATGATGATCCGTACACTggacaaaataaataacttgGCGTCACTACTAAAACTtattgcaagttttt

Function

symbol description
gpr182 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blood; cardiovascular system; endothelial cell; lateral mesoderm; and retina. Orthologous to human GPR182 (G protein-coupled receptor 182).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921045.2 True 1722 mRNA 0.46 2 20684365 20686778

Neighbor

gene id symbol gene type direction distance location
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding upstream 4295 20668113 ~ 20680070 (+)
igfbp6b igfbp6,igfbp6b,LOC108433391,LOC107697925,LOC107599019 coding upstream 18308 20661406 ~ 20666057 (+)
lima1a LOC108275931 coding upstream 73652 20586167 ~ 20610713 (+)
copz1 copz1,LOC107664248 coding upstream 139568 20537706 ~ 20544797 (+)
hoxc1a NA coding upstream 237383 20439254 ~ 20446982 (+)
LOC113530407 gpr182,LOC108275868 coding downstream 2408 20689186 ~ 20691614 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding downstream 33087 20719865 ~ 20729933 (+)
march9 march9,LOC107593952,LOC107599679 coding downstream 50966 20737744 ~ 20751871 (+)
LOC113530777 LOC108276216 coding downstream 196914 20883692 ~ 20886509 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding downstream 213344 20900122 ~ 20902771 (+)
G258273 NA non-coding upstream 3427 20663682 ~ 20680938 (+)
G258162 NA non-coding upstream 27298 20611541 ~ 20657067 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding upstream 107576 20567790 ~ 20576789 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 297552 20369995 ~ 20386813 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 575139 20108390 ~ 20109226 (+)
LOC117599265 NA non-coding downstream 10207 20696985 ~ 20699668 (+)
LOC117599266 NA non-coding downstream 21337 20708115 ~ 20711958 (+)
G258362 NA non-coding downstream 99464 20786242 ~ 20790145 (+)
LOC117599282 NA non-coding downstream 222038 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 289120 20975898 ~ 20976359 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 170170 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 285651 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 979302 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1205470 19478302 ~ 19478895 (+)
pkig NA other upstream 1461806 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 216327 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 541542 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 851267 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1984620 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2684966 23371744 ~ 23383653 (+)

Expression


Co-expression Network