LOC113530756 (LOC108276020,LOC108435576,LOC107101953)


Basic Information

Item Value
gene id LOC113530756
gene name LOC108276020,LOC108435576,LOC107101953
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21287614 ~ 21294773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921046.2
TGGATGCACAGGCTGCGCGTGGTGCGTCAGCATCCTTCCGGTTGACCCAGCTTCAGTCACATCGTCAAAGCGGCAGGGCTCACAGGGCTCGCGCAGCTCGGGATGCACGGAGCGCGTGTGTAGGGGAAATGGCGCGGCTGTGCGCGGGATGGCGCCGCTGGCTCCGGCCGCTCGTCGTGACGGTGTACGCGCTGCTCGTGGCCGTGGCTTTACCGCTGGCTGTGTGGCAGCTCCAGAAAGCCGAGgctgGAACACACACTAAGGCGTGGTTCATCgcgggtgtgtttgtgtttttaaccaTTCCCATCTCTCTATGGGGCATTCTGCAGCATCTTGTGCACTACACACAACCTGAACTACAGAAGCCTATCATCAgaatattatGGATGGTGCCAATTTACAGCTTAGACAGCtggaTTGCTCTGAAGTACCCCAGTATAGCCATCTATGTGGACACGTGTCGCGAGTGCTATGAGGCGTATGTCATCTATAACTTCCTGATGTTCCTGTTGAACTTCCTGGAGACGCAGTACCCGAACCTGGCGCTTATTTTAGAGGCTCAGGAACAGCGCTCGCTTCTGCCCCCTTTGTGCTGCTGCCCACCATGGGCCATGGGAGAGGTTCTTCTGTTCAGGTGTAAACTGGGAGTTCTGCAGTACACCGTCGTCAGACCTGTTACTACTGTAATAGCGCTTGTGTGTCAGTTGTTTGGAGTCTATGATGAGGGAAACTTCAGTTTCAGGAATGCCTGGACTTACCTCGTCATCGTCAACAATGCCTCCCAGCTGtttgccATGTACTGCCTGCTGCTGTTCTACCGCACTCTGAAGGAAGAGCTGAGCCCGTTAAAACCCGTCGGGAAATTCCTCTGTGTCAAAATGGTGGTGTTTGCCTCATTTTGGCAGGCTGTGCTCATCGCCTTTCTGGTGAAGGTTGGAGTCATCTCTCAGAAGCGCACATGGGAGTGGGAGAGTGTGGAGGCTGTAGCTACAGGGTTACAGgactTTGTAATTTGCATAGAAATGTTTGTGGCTGCCATTGCACATCACTACAGCTTCAGTTACCGTCCGTATGTGCGTGAGGATGATGAAGGCTCCTGCTTTGACTCTTTCCTCGCCATGCTGGACTTCTCCGATATACAAGCTGATATTTCTGAGCAGGTCCGCAATGTGGggcgcACAGTGCTCGGACGTCCCCGTAAGCTGTTCTTTGGCTCTGAAGTGGACATCGTGCAGGGCGAGCACACTGGCCTCCTCTCAGGGGCATCTCACGAGCGACTGGGCGTCGACCCCCTCTCTGTCCCCGCCTCCCCGAAGGGGCAGTACCAGGGCCTTGGCCAAACAGACACACCTCGCTCTCGCTCCGCCCCCACTGGCTTTAACCCCTCCTCCTGGAGGAGTGAGAGTTGTGTAGTTCCTGCAActaccaatcagaacacaggaGTTAAGTCATAGTTGTGTTGTATAGATAAAACGCACATCggcaaacacacaacacatacgcacacacacatacacacacagagcagatgCTTAGCATATTTACAAGCTGAAAACACAATCAACACATACTAAAACATGTCCTAATGCCTATGAGATGAAAGCAAACTGTTCGTATAAAGGTCGTATTGCAATCTGAGTGTTTTTGAAATTATATCGTGACTTCCCGATGTTCAAACATCTGGTTTTGTAACTGCGTGCGCTGTAGTGCAGTGGTATTTAATATGGTTTGCTTTGTAAAAGTTGATGTTGAACTTAAGTGCACTGACCGTGTTATATTGTCTCTTAAGTAAAACGACAGGGTTGCAGTTTGTATTTATGAGCAaagctttaataaaaatgtattataatatttcAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921046.2 True 1857 mRNA 0.51 10 21287614 21294773

Neighbor

gene id symbol gene type direction distance location
wu:fy63c09 NA coding downstream 14603 21259533 ~ 21273011 (-)
LOC113530739 LOC108275468 coding downstream 68701 21212913 ~ 21218913 (-)
LOC113530510 NA coding downstream 96586 21189381 ~ 21191028 (-)
LOC113530508 NA coding downstream 103505 21181047 ~ 21184109 (-)
LOC117599250 NA coding downstream 108559 21176544 ~ 21179055 (-)
ednrab LOC108276021 coding upstream 2283 21297056 ~ 21304628 (-)
LOC117599258 NA coding upstream 177945 21472718 ~ 21474842 (-)
LOC117599277 NA coding upstream 199643 21494416 ~ 21496055 (-)
LOC113530264 scml2,LOC108275918,LOC107694433,LOC107752426,LOC107564407 coding upstream 333359 21628132 ~ 21671352 (-)
ftr92 NA coding upstream 534492 21829265 ~ 21835197 (-)
G258626 NA non-coding downstream 46554 21238036 ~ 21241060 (-)
G258596 NA non-coding downstream 120016 21153906 ~ 21167598 (-)
G258437 NA non-coding downstream 333762 20953626 ~ 20953852 (-)
G258427 cptp,LOC108433359,LOC107599683,LOC107697856,LOC107706969,LOC107664144 non-coding downstream 384857 20901278 ~ 20902757 (-)
G258424 NA non-coding downstream 403519 20883799 ~ 20884095 (-)
G258700 NA non-coding upstream 80125 21374898 ~ 21375103 (-)
G258771 NA non-coding upstream 219874 21514647 ~ 21555460 (-)
LOC117599221 NA non-coding upstream 288942 21583715 ~ 21586639 (-)
LOC113530427 NA non-coding upstream 293656 21588429 ~ 21599129 (-)
G258940 NA non-coding upstream 455018 21749791 ~ 21750001 (-)
G258580 map7 other downstream 117916 21168986 ~ 21169698 (-)
camk2n1b camk2n1,LOC107664141 other downstream 311284 20973397 ~ 20976330 (-)
LOC117599256 LOC103359731 other downstream 419610 20829388 ~ 20868004 (-)
nfe2 nfe2 other downstream 762150 20518425 ~ 20525464 (-)
G258077 rarg other downstream 1015707 20252170 ~ 20271907 (-)
trnaq-uug_7 NA other upstream 59666 21354439 ~ 21354697 (-)
fyco1a LOC108275732 other upstream 630471 21925244 ~ 21954662 (-)
cpeb2 cpeb2,LOC108276376 other upstream 721274 22016047 ~ 22048388 (-)
G259306 LOC108275814,LOC108411446 other upstream 1151257 22446030 ~ 22449427 (-)
si:ch73-217n20.1 NA other upstream 1666805 22961578 ~ 22980986 (-)

Expression


Co-expression Network