bgnb (bgn,LOC107712721,LOC105006929,LOC107699588,LOC107672034)


Basic Information

Item Value
gene id bgnb
gene name bgn,LOC107712721,LOC105006929,LOC107699588,LOC107672034
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10824171 ~ 10841193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921067.2
TGTGGGAGAGGTTGCTCTAAGTTTTGGGCTGAACTTTCTCCAGATGCAGCTCCTCCGTTATTTCCTAAGTTTGTGAAGGACTTTCAGTCGTCCATTCTGCTGCAGAATACAGACCTGACACCCCGAAAAAACGGAGACAGCTCCTTTTCCTTGGGTGatagcaaaatattaaaatactacTAATTCTTATGTAACAGAATTTCGACTATTCGAAGTGACAGGGATAGTTGACGCTGAGAGAGAATCTGAGGATATTGCTGTTTAACCAAAGGTCTGAGCATATGTGTTTGTGCTCTGTCAGAATCTCAGTGATGTTCTCCTACTTCtctctcctgctgctgctgagtgTGTTCAGCTTGGCCTCCGTCTCACTGGCGCTGCCCTTTGAGCAGAGGGGCTTCTGGGACTTTGGCATCGATGGCGATGGGGGTGGTCTGACGGTAATGATGAGAGATGAAGAGGATGGCTCAGCTGTGCTGCCCACAGAGCTGCCGCCTTTTGAGGTTCCTTTGTGTCCATTTGGGTGCCAGTGTCAGCTAAAAGTGGTGCAGTGTTCTGACCTAggtTTGACCTCAGTCCCTCAAAACATCCCCACCGACACCAAGCTTCTAGACCTGCAGAACAACCGCATTACAGAGCTGAAGGAGAATGACTTCAAAGGCCTCAGTAATCTCTATGCTTTGTCACTGGTCAACAATCAGATCTCTAAAGTTCATCTGAGGGCCTTCACACCGCTAAAGCACCTAcagaaactttatttttccagGAACCTGCTGACAGCAGTACCCAAAAACCTACCACCCTCACTGGTGGAGCTGCGCATCCACGACAACCGTATTAAGAAGGTGCCTGCGGGCTCCTTTTCTGGCCTCGGCAGCATGAACTGCATAGAGATGGGTGGGAACCCCATTCAGAACGGTGGCTTTGAGCCCGGAGCTTTCAAAGGTCTCAAACTCAACTACCTGCGCATCTCAGAAGCCAAGCTTACTGGTGTGCCTAAAGATCTCCCTGAGAGCCTCCATGAGCTCCATTTGGACCAAAACCAGATCCAAGCAATTGAGCTGGAGGACCTGAGGCGCTACAAGCAACTGTATAGACTGGGCCTGGGTTATAACAACATTCGCAATATTGAGAGCGGCAGCCTGTCCTATTTGCCAAACCTGAGAGAACTGCATTTAGAAAACAACCTGCTGACCCATGTTCCCAAGGGCCTAGCTGACATGAAGTATCTGCAGGTGGTGTACCTCCATTCCAACAACATAACCCGGGTAAGCGTGGATGACTTCTGCCCTGGAAGCTATAACATGAAGAAGAGCTTCTACAATGGCATTAGTCTTTATGGAAATCCCGTCCAGTACTGGGAAGTTCAGCCTGCAACTTTCCGCTGTGTCAGTGACCGCCTGGCCATTCATTTTGGAAACTACAAGAAATAAATGCACccagaggcagagagaagaaagaaggagTGATGGATATTGaacaatatcaaaataaaactgaagagaggaaagaaaatcaGAAGACTGGGGAGGGGGATAAAATATACAGTGGGTTTAGATTAGAGTCGTCTTGATGTAGAAGGAGCTTAAAAGCGGTTTAATAAGGAATGGGGGCTTGTCACGTTTCAAATGTACAGCCTGAGAGCACAGTCTGGCTACATGCCGGGATATATTCACTGAGCTGACATACAAAAAGCACCATTCAGTTTTTATAATAACTGTTATTGTTCACCAGATCTGTTTAGTAGTAATtcatatgtattattattattattattatttgaacagagaaattaaatatagattttaatGTTAAGGTGCCCTTTATGTGTAGATCTGCCTATATGAGTGTCTTTACTGAGTCACTGTCTTGCTTCTTGTGCTTTTGGCATCTCTTCCTGAGGGGCTGTAGtaaatgtatactgtatgtgatagGAAACTACTTGTCCTATActttaaaatgcagtttgtcagaCCCCCAGGCCCCATATGTCCATTCAGTGTCTTTACTGAGCCTGGAGCTGATCTATTCTAATGTACTGTTTTGCACATTGCCTCTTCATATTCTAGATGGAAGCTCTGGATGGGTTGAGCCTGTCCCTGCTTGTACTCTGCTCATCTGCTGCATTttgagaataaaataatattctttatGACTTGA
>XM_026921068.2
GTGTGGGAGAGGTTGCTCTAAGTTTTGGGCTGAACTTTCTCCAGATGCAGCTCCTCCGTTATTTCCTAAGTTTGTGAAGGACTTTCAGTCGTCCATTCTGCTGCAGAATACAGACCTGACACCCCGAAAAAACGGAGACAGCTCCTTTTCCTTGGGTGatagcaaaatattaaaatactacTAATTCTTATGTAACAGAATTTCGACTATTCGAAGTGACAGGGATAGTTGACGCTGAGAGAGAATCTGAGGATATTGCTGTTTAACCAAAGGCCCTACTCACAGTCAAAGCCCTAGCTGGTTCACCACTGGGAAGAGGGAAGGTAACCAGAAGTACCATCCCCCTCCAGATGTCCACAGGTCTGAGCATATGTGTTTGTGCTCTGTCAGAATCTCAGTGATGTTCTCCTACTTCtctctcctgctgctgctgagtgTGTTCAGCTTGGCCTCCGTCTCACTGGCGCTGCCCTTTGAGCAGAGGGGCTTCTGGGACTTTGGCATCGATGGCGATGGGGGTGGTCTGACGGTAATGATGAGAGATGAAGAGGATGGCTCAGCTGTGCTGCCCACAGAGCTGCCGCCTTTTGAGGTTCCTTTGTGTCCATTTGGGTGCCAGTGTCAGCTAAAAGTGGTGCAGTGTTCTGACCTAggtTTGACCTCAGTCCCTCAAAACATCCCCACCGACACCAAGCTTCTAGACCTGCAGAACAACCGCATTACAGAGCTGAAGGAGAATGACTTCAAAGGCCTCAGTAATCTCTATGCTTTGTCACTGGTCAACAATCAGATCTCTAAAGTTCATCTGAGGGCCTTCACACCGCTAAAGCACCTAcagaaactttatttttccagGAACCTGCTGACAGCAGTACCCAAAAACCTACCACCCTCACTGGTGGAGCTGCGCATCCACGACAACCGTATTAAGAAGGTGCCTGCGGGCTCCTTTTCTGGCCTCGGCAGCATGAACTGCATAGAGATGGGTGGGAACCCCATTCAGAACGGTGGCTTTGAGCCCGGAGCTTTCAAAGGTCTCAAACTCAACTACCTGCGCATCTCAGAAGCCAAGCTTACTGGTGTGCCTAAAGATCTCCCTGAGAGCCTCCATGAGCTCCATTTGGACCAAAACCAGATCCAAGCAATTGAGCTGGAGGACCTGAGGCGCTACAAGCAACTGTATAGACTGGGCCTGGGTTATAACAACATTCGCAATATTGAGAGCGGCAGCCTGTCCTATTTGCCAAACCTGAGAGAACTGCATTTAGAAAACAACCTGCTGACCCATGTTCCCAAGGGCCTAGCTGACATGAAGTATCTGCAGGTGGTGTACCTCCATTCCAACAACATAACCCGGGTAAGCGTGGATGACTTCTGCCCTGGAAGCTATAACATGAAGAAGAGCTTCTACAATGGCATTAGTCTTTATGGAAATCCCGTCCAGTACTGGGAAGTTCAGCCTGCAACTTTCCGCTGTGTCAGTGACCGCCTGGCCATTCATTTTGGAAACTACAAGAAATAAATGCACccagaggcagagagaagaaagaaggagTGATGGATATTGaacaatatcaaaataaaactgaagagaggaaagaaaatcaGAAGACTGGGGAGGGGGATAAAATATACAGTGGGTTTAGATTAGAGTCGTCTTGATGTAGAAGGAGCTTAAAAGCGGTTTAATAAGGAATGGGGGCTTGTCACGTTTCAAATGTACAGCCTGAGAGCACAGTCTGGCTACATGCCGGGATATATTCACTGAGCTGACATACAAAAAGCACCATTCAGTTTTTATAATAACTGTTATTGTTCACCAGATCTGTTTAGTAGTAATtcatatgtattattattattattattatttgaacagagaaattaaatatagattttaatGTTAAGGTGCCCTTTATGTGTAGATCTGCCTATATGAGTGTCTTTACTGAGTCACTGTCTTGCTTCTTGTGCTTTTGGCATCTCTTCCTGAGGGGCTGTAGtaaatgtatactgtatgtgatagGAAACTACTTGTCCTATActttaaaatgcagtttgtcagaCCCCCAGGCCCCATATGTCCATTCAGTGTCTTTACTGAGCCTGGAGCTGATCTATTCTAATGTACTGTTTTGCACATTGCCTCTTCATATTCTAGATGGAAGCTCTGGATGGGTTGAGCCTGTCCCTGCTTGTACTCTGCTCATCTGCTGCATTttgagaataaaataatattctttatGACTTGA

Function

symbol description
bgn Predicted to be an extracellular matrix structural constituent conferring compression resistance. Predicted to be involved in blood vessel remodeling. Predicted to act upstream of or within articular cartilage development; bone development; and peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan. Located in cell surface and transport vesicle. Colocalizes with collagen-containing extracellular matrix. Implicated in Meester-Loeys syndrome and X-linked spondyloepimetaphyseal dysplasia.

NR:

description
biglycan-like

GO: NA

KEGG:

id description
K08118 BGN; biglycan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921067.2 False 2160 mRNA 0.45 8 10824172 10841193
XM_026921068.2 True 2249 mRNA 0.46 9 10824171 10841193

Neighbor

gene id symbol gene type direction distance location
si:dkey-32e6.6 LOC108276052 coding upstream 8137 10802060 ~ 10816034 (+)
tktb tktb,LOC108276051,LOC108410447,LOC103046877 coding upstream 28561 10786494 ~ 10795610 (+)
lrrc23 lrrc23 coding upstream 39213 10780232 ~ 10784958 (+)
usp19 usp19 coding upstream 53788 10745808 ~ 10770383 (+)
lamb2 lamb2,LOC108275997,LOC108410445,LOC107737594,LOC107699592 coding upstream 79783 10712763 ~ 10744388 (+)
ccnq fam58a,LOC107699584,LOC107671950,LOC107737713 coding downstream 16450 10857643 ~ 10865184 (+)
haus7 haus7 coding downstream 77082 10918275 ~ 10927209 (+)
si:dkey-93l1.9 NA coding downstream 89054 10930247 ~ 10931966 (+)
rpl10 rl10,rpl10 coding downstream 153684 10994877 ~ 10997433 (+)
LOC113530991 NA coding downstream 155416 10996609 ~ 10996743 (+)
G252732 NA non-coding upstream 58064 10765126 ~ 10766107 (+)
G252720 NA non-coding upstream 168146 10655807 ~ 10656025 (+)
G252665 NA non-coding upstream 190752 10620649 ~ 10633419 (+)
LOC117599292 LOC108275548,LOC103044939,LOC108434838,LOC102220172,LOC108233014,LOC102782874,LOC100703845,LOC107391429,LOC101472191 non-coding upstream 195367 10624852 ~ 10628804 (+)
G252675 NA non-coding upstream 282692 10541270 ~ 10541479 (+)
G252893 NA non-coding downstream 103887 10945080 ~ 10946913 (+)
G252903 LOC108249180,LOC108436314,LOC101154674 non-coding downstream 108476 10949669 ~ 10961642 (+)
G252955 NA non-coding downstream 156888 10998081 ~ 10999820 (+)
G252966 NA non-coding downstream 197025 11038218 ~ 11039431 (+)
G252996 NA non-coding downstream 262946 11104139 ~ 11104527 (+)
si:dkey-32e6.3 LOC108276471 other upstream 44311 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 481743 10270803 ~ 10342428 (+)
LOC113530359 rnf223 other upstream 2197146 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 2378566 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 2441988 8352779 ~ 8382183 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 2418 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 30836 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 390185 11231378 ~ 11237367 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 551241 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 628858 11470051 ~ 11479376 (+)

Expression


Co-expression Network