LOC113530767 (si:rp71-17i16.4,tnnc2,LOC103044939,LOC108275548,LOC108434838,LOC107737591,LOC107568845,LOC108233014,LOC103151310)


Basic Information

Item Value
gene id LOC113530767
gene name si:rp71-17i16.4,tnnc2,LOC103044939,LOC108275548,LOC108434838,LOC107737591,LOC107568845,LOC108233014,LOC103151310
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10625640 ~ 10630261 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921073.2
TTTCTGGAAAACAGGTAGACGTGAGGGGGTATTTATTAGGGGAGTGTGCAGCTCCTTGGTTGGACACTTGTGGGAAACAAAGATCCTATTCTTTCTGTTGTTCTTCAATCAAACTCATTGTATTCAACAGGCCCTCAACATGCCGACTGAAGCCCAGACTGATGCCCGCTCCTTCCTGAGCGAGGAGATGATCGCTGAGTTCAAGGCTGCCTTCGATATGTTTGATACTGATGGAGGCGGCGACATCAGCACCAAGGAGTTGGGAACCGTAATGAGGATGTTGGGTCAGAATCCAAGTAGAGAGGAGCTGGATGCCATCATTGAGGAGGTTGATGAAGATGGCAGCGGCACTATTGACTTTGAGGAGTTCTTGGTGATGATGGTGCAACAGATGAAAGAAGATCAGGCAGGCAAGAGCGAGGAAGAGCTGTCTGAATGCTTCCGTGTCTTTGACAAGAACGGAGATGGATTCATTGACCGTGAAGAGTTTGCTGACATCCTTCGTTCCACTGGGGAGCCAATAACAGAGGAGGAGATAGAAGAGCTCATGACAGATGGAGACACAAACAAAGATGGCAAAATTGACTTTGATGAGTTTTTGAAAATGATGGAGAACATTCAGTAAAGATGTCACATTCCACCCTTTCATCTTTGGCCTCCAATCATAATTCAACAACTTCATGAAACAACCTGGCAGAAAGATAAACTCATGGAAGAGTCATGGAAGAAAGCTTGTCTCATGGACAATGTGGAATAGATGGGAAGATACAGTGGCAACATCCTTCTGGAACTTTCTCTTTGGGACAGTGGAAATGGCTATAAATAACTATCAAACCCTTTTAAGAGGAAttcagcttcacacacacccccacctcATTGCCACTATGCTCCAGTTTCTTCATGACATATGATCTACCCCTCCTTGAAAACCTTACCCTCCTTTTGCCCTACTTGCCCCCCCCCTGTAGTGTTCCTAAATAAACCAGACTCAGTCTGCCTTTA

Function

symbol description
tnnc2 Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within response to activity. Predicted to be part of troponin complex. Is expressed in fast muscle cell; head muscle; heart tube; skeletal muscle; and skeletal muscle cell. Orthologous to human TNNC2 (troponin C2, fast skeletal type).
si:rp71-17i16.4 Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Predicted to be involved in regulation of muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex. Orthologous to human TNNC2 (troponin C2, fast skeletal type).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921073.2 True 1002 mRNA 0.46 6 10625640 10630261

Neighbor

gene id symbol gene type direction distance location
tnnc2 LOC108434847,LOC108276484,LOC103044421 coding downstream 1847 10620673 ~ 10623793 (-)
LOC113530527 col20a1,slc35c2,LOC108275935,LOC107699598,LOC107593422,LOC107565826,LOC107712705,LOC107699599,LOC107737589 coding downstream 5975 10570109 ~ 10619665 (-)
dpm1 dpm1,LOC107712706,LOC107737709,LOC107671953,LOC106566454 coding downstream 56881 10562324 ~ 10568759 (-)
adnpb LOC108275936 coding downstream 64169 10548390 ~ 10561471 (-)
camkvl camkvl,LOC108275516,LOC106572974,LOC101077320 coding downstream 95923 10497718 ~ 10529717 (-)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding upstream 165546 10795807 ~ 10798598 (-)
cfap126 LOC108276287,LOC108276289 coding upstream 222756 10853017 ~ 10856962 (-)
emd LOC108275784 coding upstream 301845 10932106 ~ 10941252 (-)
flna flna,LOC101154674,LOC108436314,LOC107712729 coding upstream 312614 10942875 ~ 10973775 (-)
dnase1l1 LOC108275786 coding upstream 368839 10999100 ~ 11004596 (-)
G252610 NA non-coding downstream 228900 10396395 ~ 10396740 (-)
LOC117599279 NA non-coding downstream 336956 10244041 ~ 10288684 (-)
LOC117599207 NA non-coding downstream 443752 10179788 ~ 10181888 (-)
G252479 NA non-coding downstream 569557 10054877 ~ 10056083 (-)
G252331 NA non-coding downstream 705492 9917429 ~ 9920148 (-)
G252783 NA non-coding upstream 25053 10655314 ~ 10655522 (-)
G252833 NA non-coding upstream 80134 10710395 ~ 10711491 (-)
G252856 NA non-coding upstream 148724 10778985 ~ 10779600 (-)
G252859 lrrc23 non-coding upstream 151874 10782135 ~ 10782588 (-)
G252920 NA non-coding upstream 235099 10865360 ~ 10865700 (-)
usp21 LOC108276040,LOC108432659 other downstream 155844 10460694 ~ 10469796 (-)
G252373 NA other downstream 595647 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 854077 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 2047040 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 3115849 7476205 ~ 7509791 (-)
sinup NA other upstream 6240 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 379202 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 390270 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 825759 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 919133 11549394 ~ 11568603 (-)

Expression


Co-expression Network