ttll9 (ttll9)


Basic Information

Item Value
gene id ttll9
gene name ttll9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14162526 ~ 14172104 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921095.2
GGTTGCTGTGACAACGAACAGAGCACCATTAAAAAGGCGAAGAGCGCACAGAGTTGTTTACATTAAACAACTTGTGCAGAACAAATTGTCTTATGTCGAAAAGCAAGGCAGCTGGGTCCAAGGGTGCTTACAGTTaccagaagagaagagatggGGAAGGGAGGAGTTGTGTGCGTTTCAGATGTAGCCTGACCAACACAATCCTGGATGTTCTTCGTCAGAGACCAGGCTGGGTGGAGGTCAAGGAGGATGGAGAATGGGACTTCAACTGGTGTGATGTGGGGTGGCTCAGAGAGAACTTTGACCACACGTACATGGAGGAGCATGTTAGAATTTGTCATTTCCGAAACCACTATGAGTTGACACGCAAGAACCTGATGGTGAAGAACTTAAAGCGCTATAGAAAAACACTTGAACGTGAAGCTGGCCGCCTGGAAGCAGCTAAATGTGATTTCTTTCCGCGTACGTTCGAACTACCTAGTGAGTACCATCTCTTTGTTGAGGAGTTTAAGAGAAGTCCAGGCAACATCTGGATTATGAAGCCGGTGGCTCGCTCACAGGGGAAGGGAATTTTTCTTTTTCGGAAACTAAAGGATATCATGGAATGGAAAAAGGATGGAATCCGCTCTGAGGAACAAAAAGATGAAGCTCAGGTTGAGAGCCATGTTGCCCAACGTTACATTGAGAACCCCTATCTCATTAATGGCAGAAAATTTGACCTCAGAGTCTACGTTCTTGTAACTTCATATCTCCCACTCAAGGCTTGGCTGTATAGAGATGGTTTTGCAAGATTCTCCAACACCAGGTTCTCCCTTAGCAGTATTGATGATCAGTATGTCCATCTCACTAATGTGGCAGTACAGAAAACGGCCCCGGACTACGATCCTGAGAAGGGTTGCAAATGGCAGATGCAACAGTTGCGACGTTACTTGACTGCAAAGCATGGCAGAGAGGCAGTGGAGGCGCTTTTTAAAGACATTGACAACATCTTTATCCGCAGCTTACTGAGTGTGCAGAAGGTCATCATTAACGACAAGCACTGTTTTGAGTTGTATGGATATGACATTCTGCTGGACCAGGATCTTAAGCCGTGGTTGATTGAGGTGAatgcctctccctctctcactgccAGCAGTCAAGAGGATTATGAGCTGAAGTACAGACTGCTGGAGGACACGTTGCACATTGTGGACATGGAAGGCTGTCTCAGTGGCAGAGAAAAGCAGGTTGGTGGATTTGACCTCATGTGGAATGATGGCCCAGTCTACAGGGAAGACGTGAGCTTGGAGGCTCTGGGAAGCACCTACCAAATAGCTAACACACATCTTGGCTGTGTGAATGATCGGAAGAAACAGCTGCAACAGCTGTTGAAGCCACTTCCAGGACAGAAGAGTGTATGAACAAAAACCTATGCACAGTAATAATGTTCTTCCTTATGTTCCAGACTGCTTCTAGAACTAGTGGAGTTTCCCTGTGTGCTCATTTTCTAGCCATATACTAATAGTGATCACCTCAAGCATGACTTCAGAGGCCTAACTATTTAAGACTAGTTCTagttcacacactctctcacacctATGGGCTGTTTATCTTAGCCAGTTCCtgactcaggattgaaccggggaccctggaactgtgaaaCAGCAACGCTGTCCTCTGTGCCACAAAATTGTTATGGTACGACTGTTTGTGTTGGCAATTTTGTTTGTGTGCGGTGCACTTTCAAATGCAAAGTGAATAATATAACTTTTCAAAAAACTTTTCCAATTTCTTAGTCTCCTATATGGTGAGTTGCTCCTGTAAATCCTGATGGCTCAAATTGCTTGGGACTGAAGCATCTTAACAAGCACTTATTCAGCCATGCGCTAATTGGAGCATTATGCCAACTGCGACACAGATAACCTGCCTCGTAGGCTAAGAAAGAACTATTGCCTATTCAGCAAGCTCCCCTGAGTAAACCAGACAACTGATATGATGCCAAGTGCTGCTAGAAAAAGCAAGGCAAGCTCCACTGTGGTGTGACCAAAGGAGGAACAGGAGCCAGCAGAGGGCTAATTCGGTTAATGAACTGAAAGGCATCATAAAGGCCACCTTGGCCAGGTTAAAACTCAATCCTCCACTTAATGCAATGTATCGAATACCTGACCTAGTTTAAGGCATATCAGGCCAAGTGGGTTTCTGAGCTATTCCACAGTGTACCAGTTCAATAAAGGAGTTCTTAGGTGCATTTTAG
>XM_026921096.2
GGGAGGAGTTGTGTGCGTTTCAGATGTAGCCTGACCAACACAATCCTGGATGTTCTTCGTCAGAGACCAGGCTGGGTGGAGGTCAAGGAGTGAGTCTTACAAAGCAGTGGGATGGAGAATGGGACTTCAACTGGTGTGATGTGGGGTGGCTCAGAGAGAACTTTGACCACACGTACATGGAGGAGCATGTTAGAATTTGTCATTTCCGAAACCACTATGAGTTGACACGCAAGAACCTGATGGTGAAGAACTTAAAGCGCTATAGAAAAACACTTGAACGTGAAGCTGGCCGCCTGGAAGCAGCTAAATGTGATTTCTTTCCGCGTACGTTCGAACTACCTAGTGAGTACCATCTCTTTGTTGAGGAGTTTAAGAGAAGTCCAGGCAACATCTGGATTATGAAGCCGGTGGCTCGCTCACAGGGGAAGGGAATTTTTCTTTTTCGGAAACTAAAGGATATCATGGAATGGAAAAAGGATGGAATCCGCTCTGAGGAACAAAAAGATGAAGCTCAGGTTGAGAGCCATGTTGCCCAACGTTACATTGAGAACCCCTATCTCATTAATGGCAGAAAATTTGACCTCAGAGTCTACGTTCTTGTAACTTCATATCTCCCACTCAAGGCTTGGCTGTATAGAGATGGTTTTGCAAGATTCTCCAACACCAGGTTCTCCCTTAGCAGTATTGATGATCAGTATGTCCATCTCACTAATGTGGCAGTACAGAAAACGGCCCCGGACTACGATCCTGAGAAGGGTTGCAAATGGCAGATGCAACAGTTGCGACGTTACTTGACTGCAAAGCATGGCAGAGAGGCAGTGGAGGCGCTTTTTAAAGACATTGACAACATCTTTATCCGCAGCTTACTGAGTGTGCAGAAGGTCATCATTAACGACAAGCACTGTTTTGAGTTGTATGGATATGACATTCTGCTGGACCAGGATCTTAAGCCGTGGTTGATTGAGGTGAatgcctctccctctctcactgccAGCAGTCAAGAGGATTATGAGCTGAAGTACAGACTGCTGGAGGACACGTTGCACATTGTGGACATGGAAGGCTGTCTCAGTGGCAGAGAAAAGCAGGTTGGTGGATTTGACCTCATGTGGAATGATGGCCCAGTCTACAGGGAAGACGTGAGCTTGGAGGCTCTGGGAAGCACCTACCAAATAGCTAACACACATCTTGGCTGTGTGAATGATCGGAAGAAACAGCTGCAACAGCTGTTGAAGCCACTTCCAGGACAGAAGAGTGTATGAACAAAAACCTATGCACAGTAATAATGTTCTTCCTTATGTTCCAGACTGCTTCTAGAACTAGTGGAGTTTCCCTGTGTGCTCATTTTCTAGCCATATACTAATAGTGATCACCTCAAGCATGACTTCAGAGGCCTAACTATTTAAGACTAGTTCTagttcacacactctctcacacctATGGGCTGTTTATCTTAGCCAGTTCCtgactcaggattgaaccggggaccctggaactgtgaaaCAGCAACGCTGTCCTCTGTGCCACAAAATTGTTATGGTACGACTGTTTGTGTTGGCAATTTTGTTTGTGTGCGGTGCACTTTCAAATGCAAAGTGAATAATATAACTTTTCAAAAAACTTTTCCAATTTCTTAGTCTCCTATATGGTGAGTTGCTCCTGTAAATCCTGATGGCTCAAATTGCTTGGGACTGAAGCATCTTAACAAGCACTTATTCAGCCATGCGCTAATTGGAGCATTATGCCAACTGCGACACAGATAACCTGCCTCGTAGGCTAAGAAAGAACTATTGCCTATTCAGCAAGCTCCCCTGAGTAAACCAGACAACTGATATGATGCCAAGTGCTGCTAGAAAAAGCAAGGCAAGCTCCACTGTGGTGTGACCAAAGGAGGAACAGGAGCCAGCAGAGGGCTAATTCGGTTAATGAACTGAAAGGCATCATAAAGGCCACCTTGGCCAGGTTAAAACTCAATCCTCCACTTAATGCAATGTATCGAATACCTGACCTAGTTTAAGGCATATCAGGCCAAGTGGGTTTCTGAGCTATTCCACAGTGTACCAGTTCAATAAAGGAGTTCTTAGGTGCATTTTAGAGTGCA

Function

symbol description
ttll9 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL9 (tubulin tyrosine ligase like 9).

NR:

description
probable tubulin polyglutamylase TTLL9 isoform X2

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG:

id description
K16603 TTLL9; tubulin polyglutamylase TTLL9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921095.2 True 2233 mRNA 0.45 14 14162532 14172104
XM_026921096.2 False 2101 mRNA 0.45 12 14162526 14170918

Neighbor

gene id symbol gene type direction distance location
ppp1r3da LOC108275498,LOC108438215 coding downstream 8894 14151427 ~ 14153632 (-)
pigt pigt coding downstream 76472 14072159 ~ 14086054 (-)
haus8 haus8 coding downstream 102079 14055402 ~ 14060447 (-)
sac3d1 sac3d1 coding downstream 108354 14050444 ~ 14054172 (-)
mrgbp mrgbp coding downstream 114297 14042572 ~ 14048229 (-)
edn3b NA coding upstream 5122 14177226 ~ 14197008 (-)
chl1a LOC108276120 coding upstream 105990 14278094 ~ 14322302 (-)
ppp4r2a ppp4r2,LOC108276138,LOC107551500 coding upstream 303571 14475675 ~ 14484107 (-)
tns2a tns2,LOC107681375 coding upstream 401788 14573892 ~ 14614655 (-)
eif4ba eif4b,eif4ba,LOC107666323 coding upstream 451957 14624061 ~ 14646305 (-)
G254567 NA non-coding downstream 462121 13700009 ~ 13700405 (-)
G254600 NA non-coding downstream 465906 13692797 ~ 13696620 (-)
G254599 NA non-coding downstream 497053 13664893 ~ 13665473 (-)
G254587 NA non-coding downstream 547863 13614428 ~ 13614663 (-)
G254568 cables2 non-coding downstream 571556 13590500 ~ 13590970 (-)
G255020 NA non-coding upstream 358721 14530825 ~ 14532588 (-)
G255306 NA non-coding upstream 703540 14875644 ~ 14878506 (-)
G255403 NA non-coding upstream 1008282 15180386 ~ 15180640 (-)
G255385 NA non-coding upstream 1010053 15182157 ~ 15227960 (-)
G255435 NA non-coding upstream 1160022 15332126 ~ 15332451 (-)
LOC113530423 LOC108276099 other downstream 11945 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 878641 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 1228218 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 1994731 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 2303180 11838796 ~ 11859346 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 527168 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1086381 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 1486232 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 2475719 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 2615697 16787801 ~ 16838649 (-)

Expression


Co-expression Network