fam43b (fam43b)


Basic Information

Item Value
gene id fam43b
gene name fam43b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20997669 ~ 20999732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921097.2
ctcagtctctcttcAGCGTGTGACAGAACAGCTTTCCTCACTCTTGCGCTCAGGCACTCAgtacacaacaaacacacactcgcttttTTGCCTTCGGAGGGGCATCAAGCCCCTCAGACAAATTGGGACCATGCTGCCCTGGAAAAGGAGCAAGTTTGTGCTGGTGGAGGATGATTCCAAGAGCAAAGCAAAGAGCCTGAGTGCTGGACTCACCTACCACTCACTGCTGTCCTCGCTGCTGAGGTCGTGCCCTGACCTAGTGCCTGAGTGCCCCTTCCACTGGCTCGCCGGGGTTTTCCACAGCAAGCGCCAGAAAGTGGAGCTAAACAAGGAGGAGCCCATATACAGCGTCCGCTACCTGGGAAGTGTAGTGACTGTAGTGGCGAAGGGTGAGGGCTGCACGCATGATGCTGTCGCCAAGATCTGGGCGTCCAGCAACTACGGTGAGCAGAGTGCCAAGATGAAGCTGAGTGTAGGGCCATACGGAATACGCATGGGTTGCCGCAGGAAACCCCCACACCTCTACACCCTTAACCGTATCACCTACTGCACAACAGACCCCTACCGGCCCAAGATCTTGGCCTGGATCTACCGGCACCAGGTCAAGCACAAGGCAGTGGTTCTGCGTTGCCATGCTGTACTTTTGGCCAAGGCGGACAAAGCTAATGCTATTGCTCTCAGCCTGTACCAGAACTCTATTTCAGCCTTCAGTGAGTTTAAGAGGCTCAAACGCCAGAGTGATTTCCGGCATCGCAAGCAGGAGCTGCTGGGAGAGGATATCATGCCACTCATGCCCCTACGGAAGCTGCTGAATGGACAGTGTCACTATCAGCCACCAGTAGACAGGCCTGGCAATTCCAACCGCCTGTTCTCCATCAccgaggaggatgaggaggaggaagaggaggtggAAGAGCAGGCAGACAATAAAGATGATAAAGCATCAAATACTGATCCACCAAATTCCGAGCCAGAGGAACCCCCTGAGAGAGAGCTGGGATACATAGTTCACGGACTAGACGGGTTTTCAATCACCATCAGAGACGAGGTGCACATGACTCTCAGCACACTTGTGTGACCGCACATGGATATTGGATGGTGTGcacttctttcttcctttgcccattctcctctttcctctctgtcCACTTCAGAAGAGCGCTCTCTCCTCAGAGCACACCGATTCCTGCAGAGCGTGATCTGGTCCACCATCAGCAAGTTTTAATGCTGAGTTGCTGCTGGCTCGCCTTGTGAGCACTTTCTATATGGgtgtctaataaagtggaactttgtgaataaacacaaaagCACAATGAGAGAGCGTCACACTGCAAAGCAAGCCAGGGAGGATGAACACTGAGGGAGCTCAGTCCTTGGGCTACAAACCAAACAAGGACAAAACAGAGACCTTCGATGAGCCTTTGTGTTCTTTTCATGTGATTGCATGAAAATACATACTTTTCTCAGATTTTACTGGATAATTTtggaaatatattatttgtgtaATATGGACATTTTTCTACGTACAGTAACCATCTCCCTCTTCTATGTATCTTTCCTTTCTGGCCAAAACCTCTGTGACAGCATTCAGCCTCTACACCAAGGCAGAAGCACTAATGAATTAATCCATGATTTAGGATATCAGCCATTGAATTGACGGGTTTACAGCTGCCACACATTACAGCCCCAGAATCATTTACCGTATGACCAGTGGAGACGCGTTTGCCATGGCATTTAAGGCAggatgttttaaatgtttgcagTTTTACCGTCCCTGGTTTGCACTGTGACATGTCTGGGACCAATATGaggaaaaatatgaatatagtCTATGCTTCTTTCTACATGATACACATTTCGATATCAGCTTGATCTGATAAAAAGGTAAATAAGCTTTACTGCTTTAAGAGGTAATGCATTGTTCAAAATCGTATGCCTATAAACACTGTCTCATATTCGTAGACATGTTTTTATCTAATAGTTGCTTTGTGATAATAATAGTGTACTAGACATTTCACAAGCTGTCATTCCAATTGCACTAATTAccataaaattataataaaa

Function

symbol description
fam43b Acts upstream of or within vasculature development. Is expressed in forebrain; somite border; and vasculature. Orthologous to human FAM43B (family with sequence similarity 43 member B).

NR:

description
protein FAM43B-like

GO:

id name namespace
GO:0001944 vasculature development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921097.2 True 2064 mRNA 0.47 1 20997669 20999732

Neighbor

gene id symbol gene type direction distance location
vwa5b1 vwa5b1,LOC107599492 coding upstream 43698 20919088 ~ 20953971 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding upstream 94898 20900122 ~ 20902771 (+)
LOC113530777 LOC108276216 coding upstream 111160 20883692 ~ 20886509 (+)
march9 march9,LOC107593952,LOC107599679 coding upstream 245798 20737744 ~ 20751871 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding upstream 267736 20719865 ~ 20729933 (+)
LOC113530567 LOC108275599 coding downstream 52938 21052670 ~ 21056506 (+)
cdaa cda coding downstream 60044 21059776 ~ 21062377 (+)
pink1 pink1 coding downstream 63363 21063095 ~ 21067217 (+)
agmat agmat,LOC102790280,LOC105912720 coding downstream 68441 21068173 ~ 21073057 (+)
si:ch73-217b7.1 map7 coding downstream 138493 21138225 ~ 21171926 (+)
G258439 NA non-coding upstream 21310 20975898 ~ 20976359 (+)
LOC117599282 NA non-coding upstream 86587 20908816 ~ 20911082 (+)
G258362 NA non-coding upstream 207524 20786242 ~ 20790145 (+)
G258275 LOC108276173 non-coding upstream 241131 20682370 ~ 20756538 (+)
G258460 NA non-coding downstream 85650 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 93597 21093329 ~ 21093844 (+)
G258483 iyd non-coding downstream 103982 21103714 ~ 21105101 (+)
G258462 NA non-coding downstream 107615 21107347 ~ 21108015 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding downstream 115318 21115050 ~ 21132053 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 90210 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 483474 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 598955 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1292606 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1518774 19478302 ~ 19478895 (+)
si:ch73-290k24.5 LOC108275473 other downstream 228588 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 538313 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1671666 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2372012 23371744 ~ 23383653 (+)
G259993 NA other downstream 2387806 23387538 ~ 23389314 (+)

Expression


Co-expression Network