hoxc1a


Basic Information

Item Value
gene id hoxc1a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20439254 ~ 20446982 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921098.2
GAATGTTTCTGCAAGACGAGCgggcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgcgtaggcTCGGTGCACGCGGCGCGTGTTGCCAAAGTAGATGGGCTTACTACTGGATTTAGGCTCGGTGGTCGAAGGAAGCATGTGCAAGGGAAATGCTTTCATGACTTCCTACCAGGAGTTCACCAAAGGCAACCGGGCAAACAAGACAGCGCGTCAGGATTTGGACCCAAGCAAACTCCAGATCAGACTAGAAGAACATTTCCTGTCGGCGTTCCGGTCAGAAACGGGCACTGGCGCGTGCGCGAAACGCTCTAGGGTTCCGGACATGAGAGCTCCAGATCAAGACTACTTCTTCTCTAATCCACCCCAGTGGCGTGAACAGGCCGGTTCCAGAGCACAAATCTCTCCCTCCTTACACACTTTCGCAAAGGAGTGTTGCGAGCTCGGCCCAGTCAACGCGCGCGTGTGTAACATCAGCTCATGTGATGACCCAAGACGTCATTTCGCTTTTATGGATACCAGTAACACCAGGCATGCTGGTTCTACCAACTTACACGAGGCCACGCAGATGGAAAAGCCCTTCGAATGGATGAAGGTGAAGCGCAACCAAGCGGGCACTGGGAAAGCGCATCAAACCGGCGCACGGAATTTCCTGCACTGTGTGAAAGTGGATGGTGGACAGAATGAAAGCGAGGACAGTCCACACACAGTGTCCCGGAGCAGCTTTAGCACAAAGCAGCTCACCGAGTTGGAGAAGGAGTTCCACTACAGCAGGTACCTGACGCGCGCGCGGCGGGTGGAGATCGCGAGCGCGCTGCAGCTCCGTGAGGCTCAGGTCAAAGTGTGGTTCCAAAACAGGCgcatgagagagaagaaaacgCAGCGGCTCCTGCACACACATCCAGCACCGGGAAGCTGTCTGGAATTACCCTCGAACCCAGCGGACACGTGTGCGCTTCCAGAGAAGAGTTAGTGTTCAGTTCATTGCTGTTAGCAATATGCGGGAGCTCTACGCGTTCCCCCCTCCTGCGTGCATTACGCACCGACATTATAAAAGGGCAAATGACGGATAAAGGATTGCCAAGTCAGAAAAAAGTAACctgtggggagaaaaaaaagattattatggttattataatgaaaatatactgtaagtatTTTTCCAACCCAGCGAGTATGTCTGGTGTTCATCCTCACCTGTTGAAGTCTGCactttataataacaataataataataataataataataa

Function

NR:

description
homeobox protein Hox-C1a-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921098.2 True 1245 mRNA 0.51 2 20439254 20446982

Neighbor

gene id symbol gene type direction distance location
hoxc3a NA coding upstream 8201 20389157 ~ 20431053 (+)
hoxc4a hoxc4,hoxc4a,LOC108433407,LOC103034018,LOC107714997,LOC107598886,LOC107664204 coding upstream 25393 20411373 ~ 20413861 (+)
hoxc5a hoxc5 coding upstream 36711 20399696 ~ 20402543 (+)
hoxc6a hoxc6,hoxc6a,LOC108433405,LOC107593966,LOC103034651,LOC107664205,LOC107714999,LOC107706971,LOC107697939 coding upstream 40510 20394933 ~ 20398744 (+)
hoxc8a hoxc8,hoxc8a,LOC108433404,LOC107593970,LOC107664222,LOC107598875,LOC103032829,LOC107697938,LOC107714926 coding upstream 52426 20370096 ~ 20386828 (+)
copz1 copz1,LOC107664248 coding downstream 90724 20537706 ~ 20544797 (+)
lima1a LOC108275931 coding downstream 139185 20586167 ~ 20610713 (+)
igfbp6b igfbp6,igfbp6b,LOC108433391,LOC107697925,LOC107599019 coding downstream 214424 20661406 ~ 20666057 (+)
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding downstream 221131 20668113 ~ 20680070 (+)
LOC113530755 gpr182,LOC108275868 coding downstream 237383 20684365 ~ 20686778 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 52441 20369995 ~ 20386813 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 330028 20108390 ~ 20109226 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding upstream 335214 20101008 ~ 20104040 (+)
G257814 NA non-coding upstream 339756 20099230 ~ 20099498 (+)
G257813 NA non-coding upstream 373246 20065477 ~ 20066008 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding downstream 120808 20567790 ~ 20576789 (+)
G258162 NA non-coding downstream 164559 20611541 ~ 20657067 (+)
G258273 NA non-coding downstream 216700 20663682 ~ 20680938 (+)
G258275 LOC108276173 non-coding downstream 235388 20682370 ~ 20756538 (+)
LOC117599265 NA non-coding downstream 250003 20696985 ~ 20699668 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 40540 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 734191 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 960359 19478302 ~ 19478895 (+)
pkig NA other upstream 1216695 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 1504935 18879481 ~ 18934319 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 63262 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 456123 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 781338 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1091063 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 2224416 22671398 ~ 22680542 (+)

Expression


Co-expression Network