emp3b (LOC108275556,LOC107562456,LOC107671979,LOC107737636,LOC107741326,LOC107560919,LOC108436335,LOC107657024,LOC105894294)


Basic Information

Item Value
gene id emp3b
gene name LOC108275556,LOC107562456,LOC107671979,LOC107737636,LOC107741326,LOC107560919,LOC108436335,LOC107657024,LOC105894294
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11438049 ~ 11444255 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921109.2
GAGTGCCGCTTGTTAGAGTGTATCAGGCACAGCAACACTGCTGAacagctgccactgttgggtcctCAGTCATTTTAAGTAAAGCTGCaattaatttgaattttcagattcagatctggtgTAGTTTCgaacaaataaacacagttaTTACTGTAATTTTCCACATGAAGGTGTTCCCCCTTCCCTGCTCAATTTGAACAGGATGAAAGCCGCCCCTCAGCTCTGGGTATAATACACAGCAGAGGAAATCTGGTGGGCTGAAACGACGTGTGGATGCTCTTGTGTGTCTTCGTTTAGCTGGGTGGGCCTGCTTAAAGACTGGCCTATTTTTGTAGACATGAGAGAGTGCAGGGAAGGGAGTGTTGTTCCTGTAAGATAGGAAGCAGCCACCAAGTCCAAAGCAAATATAAAGGGCGGAGTGAAAGGAAGACAGTAGTGGAAGAGTAAAAGTGGACTCGGTGGACATCCCCCTTGAAGCTGGTGAAACATCTTGTTGAGTGTAATCATTaGTGAGGGACCATGGCCATCCTGCTGATTTTTATCACACTGCTACATCTCTTCACACTGGCAGTTGTGTTCGTTGCCACTATGGAAAAGTCCTGGTGGGTGTGGAGCAGCACTGAGAGGTCAGACCTCTGGTACGACTGCAGGTTAGACAATGAAACCGAGACGTGGTTTTGTGTGTCTTCGAACGAGACAGAGTGGCTTCAAGCTGTCCAAGTCCTGATGGTCTTGTCTGCTGTCTTTTGCTCCGTCTCATTTCTCGTTTTCCTCGGTCAGCTCTTTATTATGTCAAAAGGAGGCCTCTTCTACCTTACAGGAGTCTGCCAAGCATTCGCagGTCTCACAACCTTTACTGCAGTACTCAtctacacattacacaacaaAGAAATCCTTCAGGACGCCAGAAATTTGAGCTCAGGACACTTTGGTTACTGCTTTATTTtggcatgggtgtgtgtgccTTTGCTAATGTGGAGTGGAATCATGTACATATATTTGCGCAAACGGAAGTAGCGTCACGTTTGCTCCTGATTAAGTATAAAACAGCCACagtaatatgtatatataaatttgatCACTTTTATATtgtaacaaaagacaaacttgatattctttcttattttgTAGGATAATGTTCTGTACCACAATATCTTTTTAACTATATACATGCCAagtatttttatgaataaaaccTGATTAAAACAA
>XM_026921110.2
atttgaaaaaagtATACTGAGGTCATTTTATTGGCaaaatttgctaacattaacagGCTTTAACAAAATTAGCCTGGCTTCTTTGCTAATGCTAGTTTGCCAGGTTAGGCTAGTATCAGTTCCAGCAGCTAGCATTAATGGCTAGCAAGTCAGATTCTACCTAATGaGTGAGGGACCATGGCCATCCTGCTGATTTTTATCACACTGCTACATCTCTTCACACTGGCAGTTGTGTTCGTTGCCACTATGGAAAAGTCCTGGTGGGTGTGGAGCAGCACTGAGAGGTCAGACCTCTGGTACGACTGCAGGTTAGACAATGAAACCGAGACGTGGTTTTGTGTGTCTTCGAACGAGACAGAGTGGCTTCAAGCTGTCCAAGTCCTGATGGTCTTGTCTGCTGTCTTTTGCTCCGTCTCATTTCTCGTTTTCCTCGGTCAGCTCTTTATTATGTCAAAAGGAGGCCTCTTCTACCTTACAGGAGTCTGCCAAGCATTCGCagGTCTCACAACCTTTACTGCAGTACTCAtctacacattacacaacaaAGAAATCCTTCAGGACGCCAGAAATTTGAGCTCAGGACACTTTGGTTACTGCTTTATTTtggcatgggtgtgtgtgccTTTGCTAATGTGGAGTGGAATCATGTACATATATTTGCGCAAACGGAAGTAGCGTCACGTTTGCTCCTGATTAAGTATAAAACAGCCACagtaatatgtatatataaatttgatCACTTTTATATtgtaacaaaagacaaacttgatattctttcttattttgTAGGATAATGTTCTGTACCACAATATCTTTTTAACTATATACATGCCAagtatttttatgaataaaaccTGATTAAAACAA
>XM_034311705.1
tgaaaaaagtATACTGAGGTCATTTTATTGGCaaaatttgctaacattaacagGCTTTAACAAAATTAGCCTGGCTTCTTTGCTAATGCTAGTTTGCCAGGTTAGGCTAGTATCAGTTCCAGCAGCTAGCATTAATGGCTAGCAAGTCAGATTCTACCTAATGACATGAGAGAGTGCAGGGAAGGGAGTGTTGTTCCTGTAAGATAGGAAGCAGCCACCAAGTCCAAAGCAAATATAAAGGGCGGAGTGAAAGGAAGACAGTAGTGGAAGAGTAAAAGTGGACTCGGTGGACATCCCCCTTGAAGCTGGTGAAACATCTTGTTGAGTGTAATCATTGTAGaGTGAGGGACCATGGCCATCCTGCTGATTTTTATCACACTGCTACATCTCTTCACACTGGCAGTTGTGTTCGTTGCCACTATGGAAAAGTCCTGGTGGGTGTGGAGCAGCACTGAGAGGTCAGACCTCTGGTACGACTGCAGGTTAGACAATGAAACCGAGACGTGGTTTTGTGTGTCTTCGAACGAGACAGAGTGGCTTCAAGCTGTCCAAGTCCTGATGGTCTTGTCTGCTGTCTTTTGCTCCGTCTCATTTCTCGTTTTCCTCGGTCAGCTCTTTATTATGTCAAAAGGAGGCCTCTTCTACCTTACAGGAGTCTGCCAAGCATTCGCagGTCTCACAACCTTTACTGCAGTACTCAtctacacattacacaacaaAGAAATCCTTCAGGACGCCAGAAATTTGAGCTCAGGACACTTTGGTTACTGCTTTATTTtggcatgggtgtgtgtgccTTTGCTAATGTGGAGTGGAATCATGTACATATATTTGCGCAAACGGAAGTAGCGTCACGTTTGCTCCTGATTAAGTATAAAACAGCCACagtaatatgtatatataaatttgatCACTTTTATATtgtaacaaaagacaaacttgatattctttcttattttgTAGGATAATGTTCTGTACCACAATATCTTTTTAACTATATACATGCCAagtatttttatgaataaaaccTGATTAAAACAA
>XM_034311706.1
TTTGAACTGACTAATGCATAGGAATGGAAAACACTACAaGTGAGGGACCATGGCCATCCTGCTGATTTTTATCACACTGCTACATCTCTTCACACTGGCAGTTGTGTTCGTTGCCACTATGGAAAAGTCCTGGTGGGTGTGGAGCAGCACTGAGAGGTCAGACCTCTGGTACGACTGCAGGTTAGACAATGAAACCGAGACGTGGTTTTGTGTGTCTTCGAACGAGACAGAGTGGCTTCAAGCTGTCCAAGTCCTGATGGTCTTGTCTGCTGTCTTTTGCTCCGTCTCATTTCTCGTTTTCCTCGGTCAGCTCTTTATTATGTCAAAAGGAGGCCTCTTCTACCTTACAGGAGTCTGCCAAGCATTCGCagGTCTCACAACCTTTACTGCAGTACTCAtctacacattacacaacaaAGAAATCCTTCAGGACGCCAGAAATTTGAGCTCAGGACACTTTGGTTACTGCTTTATTTtggcatgggtgtgtgtgccTTTGCTAATGTGGAGTGGAATCATGTACATATATTTGCGCAAACGGAAGTAGCGTCACGTTTGCTCCTGATTAAGTATAAAACAGCCACagtaatatgtatatataaatttgatCACTTTTATATtgtaacaaaagacaaacttgatattctttcttattttgTAGGATAATGTTCTGTACCACAATATCTTTTTAACTATATACATGCCAagtatttttatgaataaaaccTGATTAAAACAA
>XM_034311707.1
tttgaaaaaagtATACTGAGGTCATTTTATTGGCaaaatttgctaacattaacagGCTTTAACAAAATTAGCCTGGCTTCTTTGCTAATGCTAGTTTGCCAGGTTAGGCTAGTATCAGTTCCAGCAGCTAGCATTAATGGCTAGCAAGTCAGATTCTACCTAATGTCCTGGTGGGTGTGGAGCAGCACTGAGAGGTCAGACCTCTGGTACGACTGCAGGTTAGACAATGAAACCGAGACGTGGTTTTGTGTGTCTTCGAACGAGACAGAGTGGCTTCAAGCTGTCCAAGTCCTGATGGTCTTGTCTGCTGTCTTTTGCTCCGTCTCATTTCTCGTTTTCCTCGGTCAGCTCTTTATTATGTCAAAAGGAGGCCTCTTCTACCTTACAGGAGTCTGCCAAGCATTCGCagGTCTCACAACCTTTACTGCAGTACTCAtctacacattacacaacaaAGAAATCCTTCAGGACGCCAGAAATTTGAGCTCAGGACACTTTGGTTACTGCTTTATTTtggcatgggtgtgtgtgccTTTGCTAATGTGGAGTGGAATCATGTACATATATTTGCGCAAACGGAAGTAGCGTCACGTTTGCTCCTGATTAAGTATAAAACAGCCACagtaatatgtatatataaatttgatCACTTTTATATtgtaacaaaagacaaacttgatattctttcttattttgTAGGATAATGTTCTGTACCACAATATCTTTTTAACTATATACATGCCAagtatttttatgaataaaaccTGATTAAAACAA

Function

NR:

description
PREDICTED: epithelial membrane protein 3-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921109.2 True 1209 mRNA 0.43 5 11438049 11442443
XM_026921110.2 False 867 mRNA 0.40 5 11438049 11443931
XM_034311705.1 False 1041 mRNA 0.41 6 11438049 11443928
XM_034311706.1 False 739 mRNA 0.41 5 11438049 11444255
XM_034311707.1 False 777 mRNA 0.40 4 11438049 11443930

Neighbor

gene id symbol gene type direction distance location
LOC113530844 LOC108275904,LOC108436332 coding downstream 61489 11372242 ~ 11376560 (-)
fkbpl fkbpl coding downstream 160373 11274090 ~ 11277676 (-)
trnan-guu_24 NA coding downstream 164646 11273330 ~ 11273403 (-)
trnae-uuc_4 NA coding downstream 178935 11259043 ~ 11259114 (-)
ccdc115 ccdc115 coding downstream 179362 11256064 ~ 11258687 (-)
LOC113530846 idh3g,LOC108275983,LOC108436344,LOC108425561 coding upstream 143450 11587705 ~ 11598386 (-)
LOC113530831 LOC108275674,LOC108436304,LOC107657035,LOC107741317,LOC105906744,LOC107560879 coding upstream 273574 11717829 ~ 11725337 (-)
uba3 uba3,LOC108435248 coding upstream 284746 11729001 ~ 11741759 (-)
LOC113530815 LOC108276064,LOC108276065,LOC108276066,LOC108275619 coding upstream 377593 11821848 ~ 11850443 (-)
LOC113530817 LOC108276066,LOC108276064,LOC108276065,LOC108275619 coding upstream 385020 11829275 ~ 11834195 (-)
G253384 NA non-coding downstream 73635 11362972 ~ 11364414 (-)
G253385 NA non-coding downstream 76464 11359515 ~ 11361585 (-)
G253383 NA non-coding downstream 83832 11353502 ~ 11354217 (-)
G253174 NA non-coding downstream 172900 11264909 ~ 11265149 (-)
LOC113530615 fam208a non-coding downstream 346714 11089065 ~ 11091335 (-)
G253444 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 non-coding upstream 86449 11530704 ~ 11533297 (-)
G253430 LOC108275954 non-coding upstream 95926 11540181 ~ 11542479 (-)
G253463 NA non-coding upstream 127170 11571425 ~ 11571624 (-)
G253464 NA non-coding upstream 127565 11571820 ~ 11572019 (-)
G253433 NA non-coding upstream 168985 11613240 ~ 11620395 (-)
abhd6b LOC108275644,LOC108436291 other downstream 413040 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 422383 11009463 ~ 11015666 (-)
sinup NA other downstream 799331 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 968253 10460694 ~ 10469796 (-)
G252373 NA other downstream 1408056 10029492 ~ 10029993 (-)
LOC113530309 NA other upstream 11765 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 105139 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 394541 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 711473 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1453219 12897474 ~ 12934308 (-)

Expression


Co-expression Network