LOC113530792 (pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC100536777,LOC107707759,LOC107558232)


Basic Information

Item Value
gene id LOC113530792
gene name pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC100536777,LOC107707759,LOC107558232
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12975444 ~ 12987137 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921111.2
CGTGTGACGTCAGCACGTCACGTCAGCTGTGTTGTGTTTACATCAGaccgttttttttcctctgccaGAGTCAAGTTCAGCGCTGTTGTTGTGCTGTGTTTAAACATTTCCAAGTGAAATGTGGAAAAGCAGCGTTTATGCGATCGATGGGCAAACACATGGGTGAAACGGTTGTCGATTCCGCCATCGCACGACTGTGCTAGGCCTCTGTCCTCGCTGAccccagacacacactctctccttcACCATGGGTGGTGCTGTGAGTGCCGGAGAGGACAACGATGAACTGATCGACAACCTGAAGGAGGCACACTACATTCGTTCAGAGTTGGTAGAGAGGGCTTTCCGGGCCATCGATCGTGCCGATTACTATTTGGAGGAGTACAGGGACAGTGCTTACAAAGACCTGGCCTGGAGGCATGGCAACCTCCACCTGTCCGCTCCCTGCATCTATTCAGAAGTGATGGAGGCGCTGGAGCTGCAGCCTGGCCTGTCTTTCCTCAACCTAGGCAGTGGAACAGGCTACCTCAGCACCATGGTGGGCCTCATCCTGGGTCCATTTGGTGTGAATCATGGTGTTGAGCTGCATGCAGATGTGGTGGAGTATGCCTACCAGAAACTCGACTACTTCATCAAAACCAGTGACACCTTTGACAGgtttgagTTCTGTGAGCCATCGTTTGTGGTGGGTAACTGTCTGGAGATTCCTCCAGAGAGCCGCCAGTATGACAGAGTGTACTGTGGGGCTGGAGTGCAGAAAGAATATGAAAACTACATGAAGAACCTGCTGAAGGTTGGAGGAATCCTAGTGCTGCCTCTGGAGGAGAAGTTAACCAAGATCACACGCACTGGTCAGAACTCCTGGGAGACGAAGAAAATCATAGCTGTGACTTTTGCTCCTCTGGTGCAGCCCAAGCAAAGCATTAATGGGAGAGGCAAGAGTGTGCCACTGCCCATCTTTGAGGTGCGAACACTGCAGGATTTGGCACGCATCTCCATCCGCCATACCCTGCGCCAGCCTACGGAGCTGACAGAGGGCCGTTCCAAAAGGCGGGTATCGTTCCCTGGAGCTCGTGCCATGCACCGCTATGGGCCTCGCTTCGAACGCCGCCGATTCTGTCGCCGCTTCTACCGCCAGTGCATCAGCTCCACCATCCTTCACGAGTCCATGATGCCGATGGCCACAGATGACTGCACCTACCCAGGAggagtggaagaagaagaagaggaggaagctGAGGAGGAGAGGAACTGCCACCAAACAGGGGGAGACCTgcaggaagaggatgaggaagaggagagtgCCGCTGGTGAAGAAGAGGAGAAGGTAAAGCGAGTTGAGGCACCCGTCAATGTTCTGAGGCAGAGGATCCTGGGACTGCCATTGCCTGAGCCGCTCAAGATGTATCTCTTATATTATCGTGAGAAATGAGTTAAAGAAAGTTGGTGCCAATGGGCTAAACTGAATTTTAAAGGTCCAACTCACATGAGTCCACCCATGATTAAATCACTACCCCTTTTCCCATTGAGACACAAACTTGCTGCATTCTGGATGCATGAAGAACTCATATGGGTTTCTTGCACTTTCTTCTTACCACTTGTTTgagctattttttatttttttttggagtcCCTTCTGTGATTTCTGTCTGATTTTAGAAACCCGATCCCCTTTTTGCAGTGAACAAACACCTGTACATCATCTTCATGAGGCTGGTGGACTATTTCAGCAAGATTAGTGTAATGCTATGACTTGAATGACAGTAGCATCATTTTTGGATGTTTGCCAAGATTGGTGTGATAGAGTAAAAtcattgtatatttttctaTAGGTTTATGAAAGCTGTTGTCTATTGTTGAACTGCTTTCCTTGTTAGAGTCTCTCTTATCATAAGGTACTCAATTCCATTTGCATGTGTAGTGCTACTGTGCACCTGCATTTTGTTGTGATGTGTTTCAACACTTTATGCTGTGCAAGTCAGTTTATGTTTGGGGATAAAGATACATTCGACACAGTCATTCTGATGTCAGGTTAAAACAACTGTTAAGGTCTGCACATCAcgtgtaaattaaattatttattgtgcCCCTAGATtccagcacacagcacacaccccACTGCAACATGCACACATGACATGCTTATGAGCATGACATGGAAATAATACTCTCaagagcagtggttctcaaagcaGGGTGTGGGGAAGTATAGTCATGCAGCATAGCCTGGGGACTgtgactttattatttatttccagaCTACagttatcaaagttattatgtttaataatgaGTTCTGATAGTTAACTGGTCACTTGAATCGGATTGGTTTAGTCCAAACTCcaaacttggacctaatgtgttatGTCTGTGGatatttcaggaataaaaagctctgtgactaata

Function

symbol description
pcmtd2 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to be involved in protein methylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921111.2 True 2407 mRNA 0.47 6 12975444 12987137

Neighbor

gene id symbol gene type direction distance location
slco4a1 slco4a1 coding downstream 320623 12615024 ~ 12654821 (-)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107603109 coding downstream 402936 12545673 ~ 12572508 (-)
snphb snph coding downstream 469481 12485170 ~ 12505963 (-)
LOC113530362 NA coding downstream 544949 12422647 ~ 12430495 (-)
LOC113530803 LOC108276244 coding downstream 559478 12412074 ~ 12415966 (-)
myt1b myt1 coding upstream 8283 12995420 ~ 13028887 (-)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107571665,LOC107705683 coding upstream 453647 13440784 ~ 13451374 (-)
sla2 sla2 coding upstream 638761 13625898 ~ 13632021 (-)
ndrg3b ndrg3,ndrg3b,LOC103029397,LOC108429301,LOC107724194,LOC107705728,LOC107696989 coding upstream 648675 13635812 ~ 13699042 (-)
phf20b phf20,LOC107594424 coding upstream 713299 13700436 ~ 13721730 (-)
G254107 NA non-coding downstream 5433 12968364 ~ 12970011 (-)
G254110 NA non-coding downstream 42305 12932725 ~ 12933139 (-)
G254109 NA non-coding downstream 43024 12932219 ~ 12932420 (-)
G254101 NA non-coding downstream 51432 12923719 ~ 12924012 (-)
G254052 NA non-coding downstream 166845 12808380 ~ 12808599 (-)
G254153 NA non-coding upstream 153874 13141011 ~ 13141219 (-)
LOC113530405 NA non-coding upstream 213882 13201019 ~ 13202631 (-)
G254270 NA non-coding upstream 441153 13428290 ~ 13488493 (-)
LOC117599295 NA non-coding upstream 477054 13464191 ~ 13465215 (-)
G254568 cables2 non-coding upstream 603363 13590500 ~ 13590970 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 41136 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 807649 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 1116098 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 1406841 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 1512738 11456020 ~ 11462706 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 264003 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 1141826 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 1712135 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 2271348 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 2671199 15658336 ~ 15820241 (-)

Expression


Co-expression Network