LOC113530803 (LOC108276244)


Basic Information

Item Value
gene id LOC113530803
gene name LOC108276244
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12412074 ~ 12415966 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921128.2
gaaagcctgcagccacagcAGCCGTTTGTGGTTAAGATTGAAGACCTCTGGCTTAAGTCATTTTTGTTTAACATGGGTGTTGTGAAATATGCTATTGTTTAGTTTTACTAGTGATTTTAATTTATCTGTGTGTACACACCAAATGCTATCCAGAAAACTAGGCCAACAGCTGGGGCGACCCACTCAGTCCCTCGCCGGGTGGCTGGTTACCAAGTTCCTGAAGTGGCATAACCAGATCCTGGAGGAAAATGCAGTGACACTGTGTGAGATCCAGCCTGATGAGACAGTGTTGGAGCTGGGTCAAGGTCCAGGCCTGGGTTTGGAGGTAGCTGTCCAGCTCCTCACAGGGCCAGGAGGAAAGCTGTTCGGGGTGGATTACTCCAACTACATGCACCACATGGCCACAGAGAGGATGCAGGCGCACATAGCCAGTGAGAAAGTGACTCTGTACTGCACTGATGTAGCAGCAATGCCATTAGAAGACAGCAGTGTGGATAAAGTGTTCCACTGTAATTCCTATTACTACTGGCCTGACCTGAAGGTAGCTGCCTCGGAGATACACCGAGTGATGAAACCAGGTGGGCTCATGGTGACGACACTCAGACTGGATAgtgttgttttatttgcatCTAAGAAAGTGTTGCCTGGAGAGAACTGGCGACCTGAAGCCTACATGGAGGCGCTGCAGTCCTGTGGTTTTGCAGATGTCCGAATGGAGAACAGAACTGACAAGCTTATCCCATTTCAAGCAATTTATGCCACTGCTGCAAAGTAaagcatctatctatctatctatctatctgtctaactatctatctatctatctatctatctagctggCTGGCTAGCTggctgtctatctgtctgtctctgccacTCACATCACTCTCAGACTCCCTCTTTCACTCACACTCTGACCTTCACTCCCTCACCCTTCCTCCCTGCTTAAATCACCTTTGTTTTCATACCAGAATATTTGTTACTTCAACCATTCTGTGTGACCACTCTGCATGTTTATTGTAGTGTTGTGGTACGAATGATAAATGCTAAAGGACAGTGGTCATAAATGATCAAATCTGCACTGTTTAATCAAATGATCTTTCACTTTATTAAATCACGTGGCTgtttaacaatt
>XM_026921130.2
AAATTAAATCAGGCAAGTTAAAAGGCACCCTCATGCAGATCTTTAGGGAGCTCTGGGGTCCTCAGCACATTGTATATAGCAGTAGCAGTCTGCAGTCCCCCCTGTAGAACCTCATAGCCTAAGGAGTTAATTGCagAATGCTATCCAGAAAACTAGGCCAACAGCTGGGGCGACCCACTCAGTCCCTCGCCGGGTGGCTGGTTACCAAGTTCCTGAAGTGGCATAACCAGATCCTGGAGGAAAATGCAGTGACACTGTGTGAGATCCAGCCTGATGAGACAGTGTTGGAGCTGGGTCAAGGTCCAGGCCTGGGTTTGGAGGTAGCTGTCCAGCTCCTCACAGGGCCAGGAGGAAAGCTGTTCGGGGTGGATTACTCCAACTACATGCACCACATGGCCACAGAGAGGATGCAGGCGCACATAGCCAGTGAGAAAGTGACTCTGTACTGCACTGATGTAGCAGCAATGCCATTAGAAGACAGCAGTGTGGATAAAGTGTTCCACTGTAATTCCTATTACTACTGGCCTGACCTGAAGGTAGCTGCCTCGGAGATACACCGAGTGATGAAACCAGGTGGGCTCATGGTGACGACACTCAGACTGGATAgtgttgttttatttgcatCTAAGAAAGTGTTGCCTGGAGAGAACTGGCGACCTGAAGCCTACATGGAGGCGCTGCAGTCCTGTGGTTTTGCAGATGTCCGAATGGAGAACAGAACTGACAAGCTTATCCCATTTCAAGCAATTTATGCCACTGCTGCAAAGTAaagcatctatctatctatctatctatctgtctaactatctatctatctatctatctatctagctggCTGGCTAGCTggctgtctatctgtctgtctctgccacTCACATCACTCTCAGACTCCCTCTTTCACTCACACTCTGACCTTCACTCCCTCACCCTTCCTCCCTGCTTAAATCACCTTTGTTTTCATACCAGAATATTTGTTACTTCAACCATTCTGTGTGACCACTCTGCATGTTTATTGTAGTGTTGTGGTACGAATGATAAATGCTAAAGGACAGTGGTCATAAATGATCAAATCTGCACTGTTTAATCAAATGATCTTTCACTTTATTAAATCACGTGGCTgtttaacaatt
>XM_034311918.1
CGTTTGTGGTTAAGATTGAAGACCTCTGGCTTAAGTCATTTTTGTTTAACATGGGTGTTGTGAAATATGCTATTGTTTAGTTTTACTAGTGATTTTAATTTATCTGTGTGTACACACCAGTAAAATGCTATCCAGAAAACTAGGCCAACAGCTGGGGCGACCCACTCAGTCCCTCGCCGGGTGGCTGGTTACCAAGTTCCTGAAGTGGCATAACCAGATCCTGGAGGAAAATGCAGTGACACTGTGTGAGATCCAGCCTGATGAGACAGTGTTGGAGCTGGGTCAAGGTCCAGGCCTGGGTTTGGAGGTAGCTGTCCAGCTCCTCACAGGGCCAGGAGGAAAGCTGTTCGGGGTGGATTACTCCAACTACATGCACCACATGGCCACAGAGAGGATGCAGGCGCACATAGCCAGTGAGAAAGTGACTCTGTACTGCACTGATGTAGCAGCAATGCCATTAGAAGACAGCAGTGTGGATAAAGTGTTCCACTGTAATTCCTATTACTACTGGCCTGACCTGAAGGTAGCTGCCTCGGAGATACACCGAGTGATGAAACCAGGTGGGCTCATGGTGACGACACTCAGACTGGATAgtgttgttttatttgcatCTAAGAAAGTGTTGCCTGGAGAGAACTGGCGACCTGAAGCCTACATGGAGGCGCTGCAGTCCTGTGGTTTTGCAGATGTCCGAATGGAGAACAGAACTGACAAGCTTATCCCATTTCAAGCAATTTATGCCACTGCTGCAAAGTAaagcatctatctatctatctatctatctgtctaactatctatctatctatctatctatctagctggCTGGCTAGCTggctgtctatctgtctgtctctgccacTCACATCACTCTCAGACTCCCTCTTTCACTCACACTCTGACCTTCACTCCCTCACCCTTCCTCCCTGCTTAAATCACCTTTGTTTTCATACCAGAATATTTGTTACTTCAACCATTCTGTGTGACCACTCTGCATGTTTATTGTAGTGTTGTGGTACGAATGATAAATGCTAAAGGACAGTGGTCATAAATGATCAAATCTGCACTGTTTAATCAAATGATCTTTCACTTTATTAAATCACGTGGCTgtttaacaatt

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921128.2 True 1135 mRNA 0.46 3 12412074 12415585
XM_026921130.2 False 1130 mRNA 0.47 3 12412074 12415966
XM_034311918.1 False 1117 mRNA 0.45 3 12412074 12415563

Neighbor

gene id symbol gene type direction distance location
zgc:194242 LOC108276244 coding downstream 5353 12401465 ~ 12406721 (-)
ube2t ube2t coding downstream 11326 12395444 ~ 12400748 (-)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919 coding downstream 95722 12306153 ~ 12316352 (-)
nol4lb nol4l,nol4lb,LOC107563666,LOC107672011 coding downstream 126504 12187794 ~ 12285570 (-)
zgc:194282 srms,LOC108276248,LOC108435233,LOC107657057,LOC107747981,LOC107672012,LOC107560891 coding downstream 226296 12168527 ~ 12185778 (-)
LOC113530362 NA coding upstream 6681 12422647 ~ 12430495 (-)
snphb snph coding upstream 69204 12485170 ~ 12505963 (-)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107603109 coding upstream 129707 12545673 ~ 12572508 (-)
slco4a1 slco4a1 coding upstream 199058 12615024 ~ 12654821 (-)
LOC113530792 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC100536777,LOC107707759,LOC107558232 coding upstream 559478 12975444 ~ 12987137 (-)
G253843 NA non-coding downstream 18421 12392363 ~ 12393653 (-)
G253749 NA non-coding downstream 194330 12217424 ~ 12217744 (-)
LOC113530483 NA non-coding downstream 261129 12143633 ~ 12150945 (-)
G253538 NA non-coding downstream 507388 11904277 ~ 11904686 (-)
G253509 NA non-coding downstream 634141 11777718 ~ 11777933 (-)
LOC113530910 NA non-coding upstream 190575 12606541 ~ 12607682 (-)
G253977 NA non-coding upstream 245278 12661244 ~ 12709317 (-)
LOC117599211 NA non-coding upstream 276379 12692345 ~ 12714080 (-)
G254052 NA non-coding upstream 392414 12808380 ~ 12808599 (-)
G254101 NA non-coding upstream 507753 12923719 ~ 12924012 (-)
ptk6b LOC108276246 other downstream 244279 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 552728 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 843471 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 949368 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 1387065 11020531 ~ 11025009 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 481508 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 835174 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 1712997 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 2283306 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 2842519 15258485 ~ 15317365 (-)

Expression


Co-expression Network