guca1b (guca1b,LOC107657012,LOC107562461,LOC107560929)


Basic Information

Item Value
gene id guca1b
gene name guca1b,LOC107657012,LOC107562461,LOC107560929
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11225609 ~ 11228356 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921133.2
CTAATAGCAGGTTAACATCATTAAATGATTAGGTATGAAATAGTTTATTATGCACACATAGAGTATTTTGTACTCTTCCTGGAATACCCCAAATGTCCTCTGGAATAGTATGCTCTAAATGATAAACTATAGGAAAGCTTCTCCTGATCTCTCTCTGAACTAATTGAGTGAGGCATGTTGATATGAATAATCCTTGTTGTCATGTGATCAGAAGCAATCCTTGTACTGGATCCCAAAACAGTAGGGTATAAGCACGAGGTCAAAAGGACTCCAACCGCTATTGTCTATGCTGACTTGTTTTCAAAATAAGTTTTTTTAGTCATACATGTGTTTGCCAAGTAGACACAAGTTACAAGATACAAATCTGCACTAATGTTGTACGGGATGTTTTGATtgagaaaagctgaaatgtaaGAATGAACATTTTTGGTTGAGAAGCTGAATAAGGGCTTTTCAAACCCATTTGCACGATGGGTCAGCGACTCAGTGAGGAGACGGACGATAAGGAGATCGATGTTGCTGAACTGCAGGAGTGGTATAAAAAGTTTGTGGTGGAATGCCCAAGCGGAACCCTTTTCAAGCACGAGTTCAAGAGCTTCTTCGGCGTAACCGACAACCAAGAAGCTGCAGACTACATTGAGAACATGTTCCGTGCTTTTGATAAAAATGGGGACAACACTATTGATTTTCTGGAATATGTTGCAGCCTTGAACTTGGTATTGCGAGGCAAGCTGGAGCAtaaactgaaatggacttttaaaatgtatgataagGATGGAAGTGGTTGCATTGACAAGACAGAGCTAAAGGAGATTGTGGAGTCAATCTATCGAATGAAGAAGGCCTGCCATGGAGAGCTGGATGAGGAGTGTAACCTGCTCACCCCAGACCAGGTGGTGGACCGAATATTTGAGCTGGTGGACGAGAATGGAGATGGGGAGCTGTCACTGGATGAATTCGTTGATGGCGCACGGCGTGACAAGTGGGTCATGAAGATGCTGCAGATGGATGTGAACCCAGGAGAGTGGATCAATGAGCAGCGGCGACGGAGCGCCAATTTCTAAAGCAGTAAATCCAGAATCCAACTGTCCCCTCAGCCAAGATTTCACACAGTCTGTTCACTCTTTATGATTTACCATAAACACTATTAGTTCTGTGAATAAAGACTATGCAGCGAGGCAACCTTTTCCCGGAGGAAAAGTCGACCTTTCAATGGCACAGAGAGATGCACAAGGGAAATGCCAaatgtttggttgttttt

Function

symbol description
guca1b Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Predicted to act upstream of or within visual perception. Is expressed in retina. Human ortholog(s) of this gene implicated in retinitis pigmentosa 48. Orthologous to human GUCA1B (guanylate cyclase activator 1B).

NR:

description
guanylyl cyclase-activating protein 2

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0005509 calcium ion binding molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG:

id description
K08328 GUCA1; guanylate cyclase activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921133.2 True 1261 mRNA 0.43 4 11225609 11228356

Neighbor

gene id symbol gene type direction distance location
LOC113530897 klhdc8b,LOC107712738,LOC106572099,LOC106566462 coding upstream 1979 11123944 ~ 11223630 (+)
tasorb fam208a coding upstream 122021 11090187 ~ 11103588 (+)
asb14b asb14b,LOC108276494,LOC108436293,LOC107671999,LOC107560887,LOC107737718 coding upstream 136981 11079277 ~ 11088628 (+)
dnah12 dnah12 coding upstream 146335 11051523 ~ 11079274 (+)
ognb LOC108276132 coding upstream 210954 11009781 ~ 11014655 (+)
trnah-gug_14 NA coding downstream 31491 11259847 ~ 11259918 (+)
ebp ebp,LOC107672060,LOC107712744,LOC107657016 coding downstream 32418 11260774 ~ 11264393 (+)
trnaf-gaa_28 NA coding downstream 39255 11267611 ~ 11267683 (+)
pard6b pard6b,LOC108436329 coding downstream 51473 11279829 ~ 11302003 (+)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding downstream 82613 11310969 ~ 11341526 (+)
G252996 NA non-coding upstream 121082 11104139 ~ 11104527 (+)
G252966 NA non-coding upstream 186178 11038218 ~ 11039431 (+)
G252955 NA non-coding upstream 225789 10998081 ~ 10999820 (+)
G252903 LOC108249180,LOC108436314,LOC101154674 non-coding upstream 263967 10949669 ~ 10961642 (+)
G252893 NA non-coding upstream 278696 10945080 ~ 10946913 (+)
G253152 NA non-coding downstream 16405 11244761 ~ 11245472 (+)
G253151 NA non-coding downstream 17542 11245898 ~ 11246862 (+)
G253210 NA non-coding downstream 142347 11370703 ~ 11372352 (+)
G253212 NA non-coding downstream 144639 11372995 ~ 11376620 (+)
G253248 NA non-coding downstream 233358 11461714 ~ 11462757 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 312013 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 373081 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 445749 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 883181 10270803 ~ 10342428 (+)
LOC113530359 rnf223 other upstream 2598584 8620982 ~ 8627025 (+)
oard1 oard1 other downstream 3022 11231378 ~ 11237367 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 164078 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 241695 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 255063 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 366148 11594504 ~ 11640907 (+)

Expression


Co-expression Network