LOC113530805 (LOC108275557)


Basic Information

Item Value
gene id LOC113530805
gene name LOC108275557
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22631289 ~ 22642289 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921134.2
gagagagagcagactATAACACGGGTAATAAACACCGCTTGATAAGACCCAGGCAGGATTTTGAAGAGAATGGGACCCAGTGGTGCGAGGTTGTGCGTGTTTTTACTTGGAATTGTTGCACAGAATGTTGTGCAAGGAAATGTTCTAACCGTCAGCGTGTACACGGTCACCTCTAAAAGCGCAGTGCTGAGCTGGAGTAAATATGCAGGCTCATCCTCATACAGACTCACAGCTACGCCTCGCAACTCTCCCAATCCTTCTGGCTTCAGCAGCTTCAGCCAGAACACCGTCTTGGGCTCCATCAACACTCTGTCCCCCAACACCGCCTACACTTTTAGGTTGGAGGCACTGGACAGCTCCATGAGAGTGCTGGCTCAAGCCAGCGTGGACAGATACACTGCTCCTGATGTCCCCACCAACATGGCGGCTTCCTCCAAACAGAGCCAAAGCATCACAGTGGAGTTCACACAAGTCTCAGGTGCCTCCTCGTACATCCTGCGCGCCGAGACCAGCAACGGCTCCTTCATATCAGAGACATCCGTGCCAGGCTCTCCAGGGACGGTGTCCGGCTTGCAGCCTTACACCGATTACACTCTGAGCGTCATGTCCGTCAACAGTGGTGGCAGGAGCCAGCCTTCATCCTCAGTCCAAGCAAAGACAGtgttgGCCGCTCCTCTGTTAAACAGCAGCTCCCCCAGTAACAGCAGCATTGTGGTGATCTGGGCTCCGGTACCAAATGCCGTGCTGTACAGCGTCAGCATTATTCGTGACGGCTCATACCAACAGAATCGCCTCAACACCAGCAACACCAGCGTGACCTTCAGCAACCTGGAGGCTGGCACTAACTACTGCATCAAAGCTAATGCCTGGAGTCCACAAAGCGTACCTGGGGACGACTACACTGTCTGCCAGATCACCCGTCCTCCTACTCCTCAGTCCATTGTACTGGTGACCACGACGGTGAATGATGTGGTGGGTGTGTCGGTATCCTGGGATCCTGCTCAAGGTTCCAGTCGGTACGTAGCCATGAGCTCGGCTGGACTGAACTGCTCATCTGTATCCACTTCCTGTACTCTGAGTCCACTGAGCTGTGGACAGATCCATTATATCTCTGTTACTGCCTTCAACCGAGCTGGACCCAGCCAATCCTCAGAGCTGCAGCGTTACATTTCATTCCCGTGTCCTCCAGAGCCGGTCCGTGTGGATGACATCAGACCCGGTATCTGCTCCCTATCCTGGAACCCCGTGTCCTACGTGGACTATTACACCGCCTTCAGCAAGAGAGATGATGGTATAGAAGAGATGTGTAACTCCACAGGCACTTCCTGTAACTTCAGCTGCCATTGTGGCTACTCCTACATCATGAGTGTTTTTGCTAACAACCAAGCTGGAGCCAGTCCTCCAGGACCCGTCCTAAACAAAACCACCATCCCATGCTGTCCAAACATCGTGGCCGTGAATAGCATTTCCTGGGAGTCCCTGATGATCCAGTGGCAGGCGGTGCGAGGGGCAGACCTGTACAAGGTGCAGGCTGTGGACTCTTCTAATCAAACAGTGCTGTGTAATGACACCTCACCAATGTGTGTGCTCTCTGATCTCAACTGCAACGCCATGTACAATGTCTTCGTCTTTCCTTGCAATGAAGCACTGGGGTGTAATCAATCCTGTAGACCCCAGACACAGGAAACAgCTCCCTGTATGCCTGAGAGAGTGACCGTAAGAACGATTAACTCCTCATCCATCAACATCACCTGGACGCCCACTAACAAAGTTGCCAAATACACGGTCACTGTGATTGGATTGGCTAGCTCCTTCACCTGTCAGTCAAGTGCAACATCCTGTCAGGTGAATGGATTATCTTGTGGCTCCTCCTATCAGGTCACCTCCATCGCCTCCACTGATGCCGGACAGAGCATTCCCAGTTACAGCGTGTCCTTCCAGACAGCTCCGTGCTGTCCAGCCACTTTGAACGTCACTCAGGTGACGCAGGCGATGAGTAATGTCAGCTGGTCAGATGCTCAGGGAGCTCAGTCTTTTATGACATCGTTGACCTCATCGCGAGGCAATGCCACATGTCACACCACGCAGACCAAGTGCTTGATGGGATGCATCACATGCGGAACAAACTACACTGTCTCGCTACAGGTCACCAACTCCAAGGGAGACACGGCAGTATGCGTGTACCACGGCTTCTCCACCAGTAAGTGCTGTCCTTCAAGAATCCGTCTTTTCACACGCTTCAATAATACCCTGCGTGTTTCATGGTTGTCCTCGAGCTCTGGTAACTTCACGGCCCAGGTGACAGGTGGAGGCCGGGACTATGCCTGCAGCCCCGCACCGGGACAGAGCATGTGTGACGTGTCAGAAGTCACGTGTGGTGATGTGTACACGGTCATGGTGGCACCCATAAACCCGGACGGAACCATGGTGCCATTCTGTCCCAGTAGGATGTACTCCGTCTACTGCTCAGGCAGCGATGTCGGAATGGTACTCTATCGAGGCAAGAGAAGTCTGGATTAGCAAACGCTTCATCTGACATCAGACCAAAGAGCACAACTGCACTCTTCCCCATAACATCCTCCACCCTATATTAACAGCtcatactaacacacactcctcctgtcttattcaaaacatacagtaattaGGATATATGTATATTGATAAGTATTTGTGCCTTAATGTTAGACACAGTGTATTGAAAACCATTCAAAGCCATTAAAAGTGTGTATTCAAAGGCACTTATTAACCCAACTACCCAAAAGCAAGTGAAATCAATGTATTCatgttatgtatgtatgtgtttgttggGCCACACAAACTTAGCTTGAAAATCCTATTTACTAGACTTAGGTCAGTAGAAATAATTTACCAgatttaaatgaagtgcacaTGATTCAGGTATCCCAAAATGTACTCAGGGTAATGgccattttttctttgttaatgcCAGAaatattagtttgtttatagagaagaaaagcataacaaaaaagtgaaacaaaaaaagttaaagcaaaaatatcCAACTAATATGGCACATGTCAAAGAATTGATTTGAGAACTAATTTTGTTtcaaatttactttaatttaaattttatgaaCACTTTTCCTAAGTCTTGTGCCTCCAAAGGAaacaattgtttttattttacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921134.2 True 3158 mRNA 0.49 14 22631289 22642289

Neighbor

gene id symbol gene type direction distance location
LOC113530559 fndc7 coding downstream 9358 22580152 ~ 22621931 (-)
fbxo30b LOC108276409,LOC108439483,LOC107735267 coding downstream 52262 22570446 ~ 22579027 (-)
epm2a epm2a,LOC107718005,LOC102798438 coding downstream 61434 22550556 ~ 22569855 (-)
LOC113530701 LOC108276272 coding downstream 325906 22284221 ~ 22305383 (-)
LOC113530687 LOC108275733 coding downstream 617060 21999441 ~ 22014229 (-)
LOC113530789 LOC108275917,LOC108439484 coding upstream 91663 22733952 ~ 22741554 (-)
pdyn pdyn coding upstream 116162 22758451 ~ 22762020 (-)
LOC113530929 NA coding upstream 159635 22801924 ~ 22810621 (-)
LOC113530928 NA coding upstream 170715 22813004 ~ 22822197 (-)
pfkfb2a pfkfb2a,LOC108276158,LOC108439471,LOC104942567,LOC103358644 coding upstream 344169 22986458 ~ 23004607 (-)
LOC117599239 NA non-coding downstream 161536 22467663 ~ 22469753 (-)
G259337 NA non-coding downstream 207047 22422592 ~ 22424242 (-)
G259294 NA non-coding downstream 260200 22341861 ~ 22371089 (-)
G258966 NA non-coding downstream 824529 21805096 ~ 21806760 (-)
G258961 NA non-coding downstream 832045 21798836 ~ 21799244 (-)
G259692 NA non-coding upstream 11049 22653338 ~ 22656929 (-)
G259724 NA non-coding upstream 100455 22742744 ~ 22787979 (-)
G259811 LOC100697131,LOC105901900 non-coding upstream 364071 23006360 ~ 23010550 (-)
G259809 NA non-coding upstream 368560 23010849 ~ 23012362 (-)
G259812 NA non-coding upstream 375017 23017306 ~ 23018360 (-)
G259306 LOC108275814,LOC108411446 other downstream 181862 22446030 ~ 22449427 (-)
cpeb2 cpeb2,LOC108276376 other downstream 582901 22016047 ~ 22048388 (-)
fyco1a LOC108275732 other downstream 676627 21925244 ~ 21954662 (-)
trnaq-uug_7 NA other downstream 1276592 21354439 ~ 21354697 (-)
G258580 map7 other downstream 1461591 21168986 ~ 21169698 (-)
si:ch73-217n20.1 NA other upstream 319289 22961578 ~ 22980986 (-)
LOC113530288 vstm2l other upstream 549968 23192257 ~ 23240347 (-)
e2f1 e2f1 other upstream 666610 23308899 ~ 23317464 (-)
G260310 NA other upstream 1121385 23763674 ~ 23764163 (-)
LOC113530810 LOC108275656 other upstream 1331076 23973365 ~ 23979695 (-)

Expression


Co-expression Network