nucks1b (nucks1,LOC108435247,LOC107563650,LOC107737648)


Basic Information

Item Value
gene id nucks1b
gene name nucks1,LOC108435247,LOC107563650,LOC107737648
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11752133 ~ 11757875 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921139.2
TTTTACAAACACTAAACGCCTCCTGGCTGCAACAGGCCAGGCGCAATGCTCTCAATAGTAGCTGGCTAGTTGGTTAGCTACCATTCATCGATAGGCAGAACCAGGTCAATCCAGTCTGTGCTTAGCCAAACCAGATCATTTTCCAACCAAAACGTATTTATACTGTGAGAACGACACAGGTTTGAAGTTTCGCGGTTTCTTGCATCTCAGTATTATTCAGAATAACGTGAGGCAAGCGAGTTAGCTTAGCCTGCTGAAAACTACCTGGCTTGTACGTAGCTACATACCTTAGCACGCTAGTGGTTGCTCAGTGTAACCAAACCTGCCGCCAAATATCCCTCCAACATTACTGGGACATTGAAAAGTAACGTTACGGAATCAGATCTGCAGAATGGCGAGGCCTTCGAGGAATAAGAGGGTAGTTGATTATGCCCAGTTTCAAGAGTCTGATGATGCTGATGAGGAATATGAAGGAGATTCTGACAGACCCAAGAAGGCAGTGAAACAGAGTGATGAGTCTCGAATTAAAGACCATAAGAAGGACTTCAGTGATGACGATAATGACTACGgcgaggaggaagaggatgacGATGGTGGTGACAGTGACTATGAGACTAAAAAGATTAGCAAGGGAAGGCAGGCGACCGCTAAAAGGAAAAGAGCTGCAGatgacagtgatgacgatGAGAAGGTTGTGAGGAAGAAGGGCCGGCAGGTGCGGCAGGCTGCTAGTAAAGCAGCCTCTAAACAGAGGGAGATTCTTCTTGGGGACGGAGGCAGTGAAGAAGAGGAgggggaggaagaggaagatgaagatgacagtgatgtttatacaggagAGGATTCGGGCAGCGATGAAGATTTTATGGTGGAAGATGATGACGATGACAGCGACTACGGGCGTCCCAAGAGGAGGAACTCGAAAGTCAGCAGGAGGAGCAAAGACAAGAAGTCCCCAAAATCCAGAATAAGAACTTCAGtgaGCAGGGGGCcaaaaaagaagagaggaaagCGTCAGACTAAAGCAAAGAGGGTTGTGTCCAAAAAAGTCATCCCTAAAGACGAGGACGAAGACGTCGAGAGCCccagggagggagaggaggaggaagagaaggatgGGCAGGACAAGAAGAAAGGCGAGAAGAAAAAATCACCCCCAGCCGAGAAGGCCGACGAGAGCGCCGGAGAAGGGGAGGACAACGATGGCGAGGAGAAGGAGGGGCGAGAGAGTGagaaggagaaaggagaaaaggacGATGCCTCTGAGGAGGATGCTCCATCAGGCGAAGACTGATTGTCTTCTTTCTGATGGCAGAAAATTGTTTTACCcgtttttgtcttttcttattGTGGAACAGTGGAGTTTACTTTCCACACTGCTCCGGGTGTTTTggatgtttgtttatttctttcatcCTGTAAATACAATATTTCAGATGAACTCTCTGTGAAGTATCATCCACACTATTTGCAAACAGTACCTGCACCACTTTCTCTATATCCAGCTTATGGTAATCTGTATTAATGTTGAGCATTGCTAATTTACTCCTTATTCAGTTACAAATTAAAGAAAGTGGTGGAACATTTATCGCACCGTCAAGATATGTTTGATAGTGCTCATTGAGAAACATTTATGGCAGACTTGTTTTGTTAAAGCTCCATCACCACAATCTCTCAGAATACATAATTGCAGATTTAAGTATTGAATATTAGATCAGTGATTTGCTCTAATGCTGGGAACGTAGATACGCAAATGAATACAGTTACCTCCTGAATaaaatacaagattagaaataCTGCCATAAGATATCTGGTTTTTGAGGGGAAACCTTATGCTAGTTCACCACATAAGCAAAGCTTATGATCTCAATCTGTTAAATGCTTTTCATTGTTGTGGGCaggtttgttttattgttaagtGAATGTATAAGACTTATTGTCATCGAGCTGCTCTGTGGATTTGTAGAGCGCCAAATTAGCCACAATATCAGTTCAGTTCCAACATGTTACACGAATATGGAAAGTTTCATCGTCTTTAACCACAGACCACCACTTTCTCTGACATCAATTCTCATGTTGCGTGTAAACATCaatcctgtttgtttttttttttccccaccacaCCCCaatgttactttttttcttgaaatataaAGACATGAAATTGGAAccatattttgaattttgaaaccATTTTCAAATCAATTTTGCTAAAAGCTTGTGTGCTGGAAAAGAGTGGACAGTTCTACATCACCTTGTACATTCTctaacagtttaaaaagatgATAACATTTAAAAGATGTTAACATTATGATGCTTTTACAACAGTTTTGCTTTCAacatttctgcagcttaaacgTAGCCTATAATTGCATTGTAGTACTGCAGTTCATGGAGTGGCATTACGTGTGTCGTGAGTTGTTTAGTTGGTGTGACAGGAAAGGTAGAGTGTACGATGATTTGGGTGTATGAATGTCAGAAAGACTGTCAGAAGTGAGCTAGTAACAACCTTATTATTGACTTTGTGATGCttcatatgtgtattttttaagtattttgaTGCTTATAGATGCCTTTCAGATAAATTATCTGTGGAGCCAGTTGGGTGGTGAAGCAGAATGTAATTCAGTTCACACCACCCTGAGCTTTCTCTGCTTCTTTTGTCTATTTCCATGACTTCTATCTTTGTCCAATTATGTAGCCTTTCAATCTATGATAATTtatctaaaataaaactaaaataaaaaactttgttTTAATTGA
>XM_034312012.1
TTTTTACAAACACTAAACGCCTCCTGGCTGCAACAGGCCAGGCGCAATGCTCTCAATAGTAGCTGGCTAGTTGGTTAGCTACCATTCATCGATAGGCAGAACCAGGTCAATCCAGTCTGTGCTTAGCCAAACCAGATCATTTTCCAACCAAAACGTATTTATACTGTGAGAACGACACAGGTTTGAAGTTTCGCGGTTTCTTGCATCTCAGTATTATTCAGAATAACGTGAGGCAAGCGAGTTAGCTTAGCCTGCTGAAAACTACCTGGCTTGTACGTAGCTACATACCTTAGCACGCTAGTGGTTGCTCAGTGTAACCAAACCTGCCGCCAAATATCCCTCCAACATTACTGGGACATTGAAAAGTAACGTTACGGAATCAGATCTGCAGAATGGCGAGGCCTTCGAGGAATAAGAGGGTAGTTGATTATGCCCAGTTTCAAGAGTCTGATGATGCTGATGAGGAATATGAAGGAGATTCTGACAGACCCAAGAAGGCAGTGAAACAGAGTGATGAGTCTCGAATTAAAGACCATAAGAAGGACTTCAGTGATGACGATAATGACTACGgcgaggaggaagaggatgacGATGGTGGTGACAGTGACTATGAGACTAAAAAGATTAGCAAGGGAAGGCAGGCGACCGCTAAAAGGAAAAGAGCTGCAGAGGATTCGGGCAGCGATGAAGATTTTATGGTGGAAGATGATGACGATGACAGCGACTACGGGCGTCCCAAGAGGAGGAACTCGAAAGTCAGCAGGAGGAGCAAAGACAAGAAGTCCCCAAAATCCAGAATAAGAACTTCAGtgaGCAGGGGGCcaaaaaagaagagaggaaagCGTCAGACTAAAGCAAAGAGGGTTGTGTCCAAAAAAGTCATCCCTAAAGACGAGGACGAAGACGTCGAGAGCCccagggagggagaggaggaggaagagaaggatgGGCAGGACAAGAAGAAAGGCGAGAAGAAAAAATCACCCCCAGCCGAGAAGGCCGACGAGAGCGCCGGAGAAGGGGAGGACAACGATGGCGAGGAGAAGGAGGGGCGAGAGAGTGagaaggagaaaggagaaaaggacGATGCCTCTGAGGAGGATGCTCCATCAGGCGAAGACTGATTGTCTTCTTTCTGATGGCAGAAAATTGTTTTACCcgtttttgtcttttcttattGTGGAACAGTGGAGTTTACTTTCCACACTGCTCCGGGTGTTTTggatgtttgtttatttctttcatcCTGTAAATACAATATTTCAGATGAACTCTCTGTGAAGTATCATCCACACTATTTGCAAACAGTACCTGCACCACTTTCTCTATATCCAGCTTATGGTAATCTGTATTAATGTTGAGCATTGCTAATTTACTCCTTATTCAGTTACAAATTAAAGAAAGTGGTGGAACATTTATCGCACCGTCAAGATATGTTTGATAGTGCTCATTGAGAAACATTTATGGCAGACTTGTTTTGTTAAAGCTCCATCACCACAATCTCTCAGAATACATAATTGCAGATTTAAGTATTGAATATTAGATCAGTGATTTGCTCTAATGCTGGGAACGTAGATACGCAAATGAATACAGTTACCTCCTGAATaaaatacaagattagaaataCTGCCATAAGATATCTGGTTTTTGAGGGGAAACCTTATGCTAGTTCACCACATAAGCAAAGCTTATGATCTCAATCTGTTAAATGCTTTTCATTGTTGTGGGCaggtttgttttattgttaagtGAATGTATAAGACTTATTGTCATCGAGCTGCTCTGTGGATTTGTAGAGCGCCAAATTAGCCACAATATCAGTTCAGTTCCAACATGTTACACGAATATGGAAAGTTTCATCGTCTTTAACCACAGACCACCACTTTCTCTGACATCAATTCTCATGTTGCGTGTAAACATCaatcctgtttgtttttttttttccccaccacaCCCCaatgttactttttttcttgaaatataaAGACATGAAATTGGAAccatattttgaattttgaaaccATTTTCAAATCAATTTTGCTAAAAGCTTGTGTGCTGGAAAAGAGTGGACAGTTCTACATCACCTTGTACATTCTctaacagtttaaaaagatgATAACATTTAAAAGATGTTAACATTATGATGCTTTTACAACAGTTTTGCTTTCAacatttctgcagcttaaacgTAGCCTATAATTGCATTGTAGTACTGCAGTTCATGGAGTGGCATTACGTGTGTCGTGAGTTGTTTAGTTGGTGTGACAGGAAAGGTAGAGTGTACGATGATTTGGGTGTATGAATGTCAGAAAGACTGTCAGAAGTGAGCTAGTAACAACCTTATTATTGACTTTGTGATGCttcatatgtgtattttttaagtattttgaTGCTTATAGATGCCTTTCAGATAAATTATCTGTGGAGCCAGTTGGGTGGTGAAGCAGAATGTAATTCAGTTCACACCACCCTGAGCTTTCTCTGCTTCTTTTGTCTATTTCCATGACTTCTATCTTTGTCCAATTATGTAGCCTTTCAATCTATGATAATTtatctaaaataaaactaaaataaaaaactttgttTTAATTGA

Function

symbol description
nucks1 Enables chromatin binding activity; double-stranded DNA binding activity; and transcription coactivator activity. Involved in several processes, including DNA metabolic process; cellular response to X-ray; and modulation by host of viral process. Located in chromatin; cytoplasm; and nuclear lumen.

NR:

description
PREDICTED: nuclear ubiquitous casein and cyclin-dependent kinase substrate 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921139.2 True 2763 mRNA 0.41 8 11752134 11757875
XM_034312012.1 False 2593 mRNA 0.41 7 11752133 11757875

Neighbor

gene id symbol gene type direction distance location
tafa1a fam19a1,fam19a1a,LOC108275576,LOC108436303,LOC107560881,LOC107741340,LOC107657002,LOC107563677 coding upstream 37323 11671398 ~ 11714810 (+)
fam120c fam120c,LOC108436345,LOC107657034,LOC107741318,LOC107672004 coding upstream 131763 11600642 ~ 11620370 (+)
sephs3 sps2,LOC107560911,LOC108275954 coding upstream 210109 11533655 ~ 11542024 (+)
ssr4 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 coding upstream 218883 11530650 ~ 11533250 (+)
ikbkg ikbkg coding upstream 223814 11516389 ~ 11528319 (+)
mfsd4ab mfsd4a coding downstream 3324 11761199 ~ 11767193 (+)
lemd1 NA coding downstream 27995 11785870 ~ 11808702 (+)
pm20d1.2 pm20d1 coding downstream 51116 11808991 ~ 11821760 (+)
tfip11 tfip11,LOC107737658,LOC107671994,LOC107657044,LOC107741308 coding downstream 142523 11900398 ~ 11907918 (+)
bhlhe23 bhlhe23 coding downstream 263781 12021656 ~ 12023438 (+)
G253301 NA non-coding upstream 22841 11729040 ~ 11729292 (+)
G253248 NA non-coding upstream 289376 11461714 ~ 11462757 (+)
G253212 NA non-coding upstream 375513 11372995 ~ 11376620 (+)
G253210 NA non-coding upstream 379781 11370703 ~ 11372352 (+)
G253151 NA non-coding upstream 505271 11245898 ~ 11246862 (+)
G253329 NA non-coding downstream 25033 11782908 ~ 11784064 (+)
LOC117599271 NA non-coding downstream 39382 11797257 ~ 11799304 (+)
G253548 NA non-coding downstream 181204 11939079 ~ 11941237 (+)
LOC117599216 NA non-coding downstream 188457 11946332 ~ 11974544 (+)
LOC113530280 NA non-coding downstream 233765 11991640 ~ 11992121 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other upstream 111226 11594504 ~ 11640907 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other upstream 244383 11483419 ~ 11507750 (+)
zgc:103759 LOC108276081,LOC108436299 other upstream 272757 11470051 ~ 11479376 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other upstream 336684 11392434 ~ 11415449 (+)
oard1 oard1 other upstream 514766 11231378 ~ 11237367 (+)
G253367 naca,LOC106571941 other downstream 134275 11892150 ~ 11900364 (+)
trim101 LOC108276180 other downstream 355747 12113622 ~ 12121372 (+)
ppdpfb pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 other downstream 383597 12141472 ~ 12143527 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other downstream 608738 12366613 ~ 12385996 (+)
rbbp8l rbbp8nl other downstream 1079176 12837051 ~ 12854380 (+)

Expression


Co-expression Network