LOC113530831 (LOC108275674,LOC108436304,LOC107657035,LOC107741317,LOC105906744,LOC107560879)


Basic Information

Item Value
gene id LOC113530831
gene name LOC108275674,LOC108436304,LOC107657035,LOC107741317,LOC105906744,LOC107560879
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11717829 ~ 11725337 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921182.2
cacacacacacacacacacatgtacagtatgtacatgaACCAAACGGGGTGTGACTGAGAAAAGCAACCGCGCGCAACAAGCGCGAGACTCAGCACTGATTCTGCACGAGCTCATTTTTTCAACTTAGAAATGACTTTAAGTCACTTTTTACCTCACTTTCATCCGTGTTTGTTTGCGGTGTGAACATATTTTTTCGCTTGTTGCCTATTTTCGTGGCTTTTCAACCTTCAACATCAACTTCCAGCATGCATTTCCAATGCAAAAATAGTTTTGCTTTTTCTCAGCATCAGACATCTGACTGATTTCTAACTCCACTACAGGGATTCAAGGTGATGCTGAACTAAAAGTGCAACATCCaggtctctctccctctctttcacaGGAGTTTAGAAGATGTGTGAGAAGCTGTTTTTGATTGcactgctggtgtgtgtgtggctcctGTGCGCTCAGTCAGTGTCCAGCAGCAACCGAAGCTCTAGGGGACATCCAGGTGGAGTAAAACCTGGTACTTGTGAGGTGGTGGCTGCCCATCGCTGCTGCAATAAGAATAAGATTGAGGAAAGATCTCAGACAGTCAAATGCTCATGCCTCATTGGACAGGTGGCAGGAACAACCCACGCACGGCCGTCATGTGTGGAGGcatCTATCGTGCATCTGAAGTGGTGGTGTCAGATGGAGCCGTGCTTGGAGGATGAGGAATGTAAAGTTCTCCCTGACCTCACCGGCTGGTCCTGCAGCTCTGGGAACAAAGTGAAAACCACCAAAGTGAGCAGGCCACCGAGACCCGCAAAATAGAACTCATTTCCATCATCCATAAGTAGTCTCATTTGGCTGACCTTTTCAGAAGTCATACGCTTATCTCCAGCACTAATGTACAACAATGTCTGGTGTCCTAGAAATCCAGTCTAGGCTATGGCTGCTATGATTGTTCTTAGCCggtctgtaaatgttaatggcTGCAAGAGTAGAGATGGATATTATGCCCATGGCTGCTGGGATTTCTCACAAATGTGGTTATTGATACTGCATTTGTACTAAacctttcattctttcttgcCCTCTGTTCTGTTTTGCACAGGCGACACAATAGCGTGATACTGGCTACATATGCTTTGACATCACACTTTACGGAAACTGCAGAAACTCGTAATGATGTGTTATCACAATCACCTACAGCTACAAGTGTTGAGAATACACAGATGTACACAAATGAGAGAATGTTTgaagagtatatatatatatatatatatgaagtcaCTTTCTGTCAGTGGGTAATGAAcctgttaattttattttatctttgagCAATAATGAGGAGGGAATTTACTCCAATTCCTTTAGTTTATCATCTTAAAAATGTTTCCACCATTCACATAAATCCTACAATCCTACTGAATAAAGGAATTTTCCTGTCCATTAACTTTATGACATTCATTGCTGAGTATTACAGACTCACCATACTTCCTGTGGGGTTCAGGCCACTGAGTCATTTATGTTGTCATATCTCAAAGTTACATGATTGTATTAttcttctctcgctctctgccATAAGCACAGTAATATTATTCTTGCAGTTGACATTTCAGATCATActgaaattctctctctctcacacacacacacacacacacacacacacacctgctggaGCCTGAATGATGTCCACTCTGACACTGGTGTAAAGTCCCTGCACAGCTCCCTGCCTCTGACAGCCTGACTAAGAGAAACAtggaaatattcaaataatgccctaacacacatgcacacactcacccacttGCCGGCCCCATTTATTTTCCATCTGACTGGTTTGACACACCACCTGCAAGCCTGTGGAGACAACTATGGAGCTCTGtatggcagagagagagagagatttataatgttacacttttcttagattttttttatgttgtcatattgtgcattttttgtttAACCTGATTTAGATGACTGTTAAGAATAACTATGATGAATGAACATCCCATCCATTGTCTTATGAATACTGCATGTTGCTTGTTGTTGCTGATGGTTGATATTATTTCCAGAGTTCTAGaataaattttctttttccattaa
>XM_026921183.2
cacacacacacacacacacatgtacagtatgtacatgaACCAAACGGGGTGTGACTGAGAAAAGCAACCGCGCGCAACAAGCGCGAGACTCAGCACTGATTCTGCACGAGCTCATTTTTTCAACTTAGAAATGACTTTAAGTCACTTTTTACCTCACTTTCATCCGTGTTTGTTTGCGGTGTGAACATATTTTTTCGCTTGTTGCCTATTTTCGTGGCTTTTCAACCTTCAACATCAACTTCCAGCATGCATTTCCAATGCAAAAATAGTTTTGCTTTTTCTCAGCATCAGACATCTGACTGATTTCTAACTCCACTACAGGGATTCAAGGTGATGCTGAACTAAAAGTGCAACATCCaggtctctctccctctctttcacaGGAGTTTAGAAGTAGATGTGTGAGAAGCTGTTTTTGATTGcactgctggtgtgtgtgtggctcctGTGCGCTCAGTCAGTGTCCAGCAGCAACCGAAGCTCTAGGGGACATCCAGGTGGAGTAAAACCTGGTACTTGTGAGGTGGTGGCTGCCCATCGCTGCTGCAATAAGAATAAGATTGAGGAAAGATCTCAGACAGTCAAATGCTCATGCCTCATTGGACAGGTGGCAGGAACAACCCACGCACGGCCGTCATGTGTGGAGGcatCTATCGTGCATCTGAAGTGGTGGTGTCAGATGGAGCCGTGCTTGGAGGATGAGGAATGTAAAGTTCTCCCTGACCTCACCGGCTGGTCCTGCAGCTCTGGGAACAAAGTGAAAACCACCAAAGTGAGCAGGCCACCGAGACCCGCAAAATAGAACTCATTTCCATCATCCATAAGTAGTCTCATTTGGCTGACCTTTTCAGAAGTCATACGCTTATCTCCAGCACTAATGTACAACAATGTCTGGTGTCCTAGAAATCCAGTCTAGGCTATGGCTGCTATGATTGTTCTTAGCCggtctgtaaatgttaatggcTGCAAGAGTAGAGATGGATATTATGCCCATGGCTGCTGGGATTTCTCACAAATGTGGTTATTGATACTGCATTTGTACTAAacctttcattctttcttgcCCTCTGTTCTGTTTTGCACAGGCGACACAATAGCGTGATACTGGCTACATATGCTTTGACATCACACTTTACGGAAACTGCAGAAACTCGTAATGATGTGTTATCACAATCACCTACAGCTACAAGTGTTGAGAATACACAGATGTACACAAATGAGAGAATGTTTgaagagtatatatatatatatatatatgaagtcaCTTTCTGTCAGTGGGTAATGAAcctgttaattttattttatctttgagCAATAATGAGGAGGGAATTTACTCCAATTCCTTTAGTTTATCATCTTAAAAATGTTTCCACCATTCACATAAATCCTACAATCCTACTGAATAAAGGAATTTTCCTGTCCATTAACTTTATGACATTCATTGCTGAGTATTACAGACTCACCATACTTCCTGTGGGGTTCAGGCCACTGAGTCATTTATGTTGTCATATCTCAAAGTTACATGATTGTATTAttcttctctcgctctctgccATAAGCACAGTAATATTATTCTTGCAGTTGACATTTCAGATCATActgaaattctctctctctcacacacacacacacacacacacacacacacctgctggaGCCTGAATGATGTCCACTCTGACACTGGTGTAAAGTCCCTGCACAGCTCCCTGCCTCTGACAGCCTGACTAAGAGAAACAtggaaatattcaaataatgccctaacacacatgcacacactcacccacttGCCGGCCCCATTTATTTTCCATCTGACTGGTTTGACACACCACCTGCAAGCCTGTGGAGACAACTATGGAGCTCTGtatggcagagagagagagagatttataatgttacacttttcttagattttttttatgttgtcatattgtgcattttttgtttAACCTGATTTAGATGACTGTTAAGAATAACTATGATGAATGAACATCCCATCCATTGTCTTATGAATACTGCATGTTGCTTGTTGTTGCTGATGGTTGATATTATTTCCAGAGTTCTAGaataaattttctttttccattaa
>XM_034312010.1
cacacacacacacacacacatgtacagtatgtacatgaACCAAACGGGGTGTGACTGAGAAAAGCAACCGCGCGCAACAAGCGCGAGACTCAGCACTGATTCTGCACGAGCTCATTTTTTCAACTTAGAAATGACTTTAAGTCACTTTTTACCTCACTTTCATCCGTGTTTGTTTGCGGTGTGAACATATTTTTTCGCTTGTTGCCTATTTTCGTGGCTTTTCAACCTTCAACATCAACTTCCAGCATGCATTTCCAATGCAAAAATAGTTTTGCTTTTTCTCAGCATCAGACATCTGACTGATTTCTAACTCCACTACAGGGATTCAAGGTGATGCTGAACTAAAAGTGCAACATCCaggtctctctccctctctttcacaGGAGTTTAGAAGATGTGTGAGAAGCTGTTTTTGATTGcactgctggtgtgtgtgtggctcctGTGCGCTCAGTCAGTGTCCAGCAGCAACCGAAGCTCTAGGGGACATCCAGGTGGAGTAAAACCTGGTACTTGTGAGGTGGTGGCTGCCCATCGCTGCTGCAATAAGAATAAGATTGAGGAAAGATCTCAGACAGTCAAATGCTCATGCCTCATTGGACAGGTGGCAGGAACAACCCACGCACGGCCGTCATGTGTGGAGGcatCTATCGTGCATCTGAAGTGGTGGTGTCAGATGGAGCCGTGCTTGGAGGATGAGGAATGTAAAGTTCTCCCTGACCTCACCGGCTGGTCCTGCAGCTCTGGGAACAAAGTGAAAACCACCAAAGCGACACAATAGCGTGATACTGGCTACATATGCTTTGACATCACACTTTACGGAAACTGCAGAAACTCGTAATGATGTGTTATCACAATCACCTACAGCTACAAGTGTTGAGAATACACAGATGTACACAAATGAGAGAATGTTTgaagagtatatatatatatatatatatgaagtcaCTTTCTGTCAGTGGGTAATGAAcctgttaattttattttatctttgagCAATAATGAGGAGGGAATTTACTCCAATTCCTTTAGTTTATCATCTTAAAAATGTTTCCACCATTCACATAAATCCTACAATCCTACTGAATAAAGGAATTTTCCTGTCCATTAACTTTATGACATTCATTGCTGAGTATTACAGACTCACCATACTTCCTGTGGGGTTCAGGCCACTGAGTCATTTATGTTGTCATATCTCAAAGTTACATGATTGTATTAttcttctctcgctctctgccATAAGCACAGTAATATTATTCTTGCAGTTGACATTTCAGATCATActgaaattctctctctctcacacacacacacacacacacacacacacacctgctggaGCCTGAATGATGTCCACTCTGACACTGGTGTAAAGTCCCTGCACAGCTCCCTGCCTCTGACAGCCTGACTAAGAGAAACAtggaaatattcaaataatgccctaacacacatgcacacactcacccacttGCCGGCCCCATTTATTTTCCATCTGACTGGTTTGACACACCACCTGCAAGCCTGTGGAGACAACTATGGAGCTCTGtatggcagagagagagagagatttataatgttacacttttcttagattttttttatgttgtcatattgtgcattttttgtttAACCTGATTTAGATGACTGTTAAGAATAACTATGATGAATGAACATCCCATCCATTGTCTTATGAATACTGCATGTTGCTTGTTGTTGCTGATGGTTGATATTATTTCCAGAGTTCTAGaataaattttctttttccattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921182.2 False 2083 mRNA 0.42 4 11717829 11725337
XM_026921183.2 True 2086 mRNA 0.42 4 11717829 11725337
XM_034312010.1 False 1770 mRNA 0.42 5 11717829 11725337

Neighbor

gene id symbol gene type direction distance location
LOC113530846 idh3g,LOC108275983,LOC108436344,LOC108425561 coding downstream 119443 11587705 ~ 11598386 (-)
emp3b LOC108275556,LOC107562456,LOC107671979,LOC107737636,LOC107741326,LOC107560919,LOC108436335,LOC107657024,LOC105894294 coding downstream 273574 11438049 ~ 11444255 (-)
LOC113530844 LOC108275904,LOC108436332 coding downstream 341269 11372242 ~ 11376560 (-)
fkbpl fkbpl coding downstream 440153 11274090 ~ 11277676 (-)
trnan-guu_24 NA coding downstream 444426 11273330 ~ 11273403 (-)
uba3 uba3,LOC108435248 coding upstream 3664 11729001 ~ 11741759 (-)
LOC113530815 LOC108276064,LOC108276065,LOC108276066,LOC108275619 coding upstream 96511 11821848 ~ 11850443 (-)
LOC113530817 LOC108276066,LOC108276064,LOC108276065,LOC108275619 coding upstream 103938 11829275 ~ 11834195 (-)
nfascb LOC108276480,LOC108435243,LOC107737654,LOC107672057,LOC107741310 coding upstream 137814 11863151 ~ 11884023 (-)
LOC113530663 LOC108275530,LOC108435244,LOC107560901,LOC107671993 coding upstream 159207 11884544 ~ 11892026 (-)
G253494 NA non-coding downstream 3076 11712997 ~ 11714753 (-)
G253433 NA non-coding downstream 97434 11613240 ~ 11620395 (-)
G253464 NA non-coding downstream 145810 11571820 ~ 11572019 (-)
G253463 NA non-coding downstream 146205 11571425 ~ 11571624 (-)
G253430 LOC108275954 non-coding downstream 175350 11540181 ~ 11542479 (-)
G253499 NA non-coding upstream 18613 11743950 ~ 11744158 (-)
G253492 NA non-coding upstream 29868 11755205 ~ 11757930 (-)
G253509 NA non-coding upstream 52381 11777718 ~ 11777933 (-)
G253538 NA non-coding upstream 178940 11904277 ~ 11904686 (-)
LOC113530483 NA non-coding upstream 418296 12143633 ~ 12150945 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 149226 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 255123 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 692820 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 702163 11009463 ~ 11015666 (-)
sinup NA other downstream 1079111 10636501 ~ 10638718 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 113459 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 430391 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1172137 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1525803 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 2403626 14128963 ~ 14150581 (-)

Expression


Co-expression Network