dnase1l1 (LOC108275786)


Basic Information

Item Value
gene id dnase1l1
gene name LOC108275786
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10999100 ~ 11004596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921185.2
CCTGGGAAGGGTGGATCCTCTTTCACTGAACAACACTACTGCTTAAAAAAATCCGCTTCTCCGGAAGTCAAACTTTCCTCACAACTCCCCAAAAAGCGTTGAAACCCCTTCAGCTCTCAGgttcacTATGATTCTTCCTCAATCCCTGCTCTTTTTAGTCTACCTCTCTGGACCGCTGGCCTGCCATGCATTCAAGATTTGTGCCTTCAACGTTCAGAGTTTTGGAGGCTCGAAAGCAACAGATGGCACAGTTTTGCACATCCTAATACGGATTGTGTCACGCTGTGATGTGTGTTTGCTTCAAGAAGTCAGAGATCAGAAGAAAACAGCCATACCACGTCTGATTAATAGACTCAATAAttatgaAAGGGATCACCAGTATGACTATGTGTCCAGTGGACGTCTTGGCAGGACACAAACCTATCAAGAGCAATATGTTTTTGTATTCAGGATTGACTCAGTCAGGCTAATAGACCAGTATCAGTACCCAGACACACAGAAAGGAGATGAGGATGCTTTTGCCAGGGAGCCTTTTGTAGTGCGCTTCCGAGCACCTAAAACAGTGATTGGCGAGTTTGTTCTGatcccaatgcacacctctcCTTCTAATGCCACCAAAGAGATTGATGAACTCTATGATGTCTTTGAGGATGTTAGACAGAGGTGGAAGACAGAGGACATAATGTTCCTTGGTGACTTCAATGCAGCTTGTGGATATGTCGCcaagaaaaacaggaagaacaTAAGACTCTACTCCAACATTTTCAGCTGGCTGATAGATGACAAACAGGACACTACAGTAAGAGGGACCACTGACTGTGCATATGACAGGATAGTGGTACACGGAGATTCCTTTCTCAGAGCTATAGTGCCATTCTCAGCACAACCATTTAATTTTGCCAGTGAATACCGGATCAAGGAGGAAGAGGCTTTACGTGTGAGTGACCACTATCCTGTAGAGGTAGACCTGAAGACCAAGTCAGGAAGTGAGCAGGGAAGCATGATCTTTTTCCAAATAACTCTTGGCCTTCCCTTGCTACTCCAACTGACATGACACCAGTGTGAAAGCGGAGACtttttcagtcagtcagtttgaGAGAAGATAACGATATGCACTGATGCTACTTAAACATCATCTAAGCCAAAGCTGCATAAGAATGTACTGGGTTTCTTGGAAATAATGTGATACACATTTTCATGCTCTTTAAATCAAGGAGATTGTAAGTATTAAAAAAGTTTATCAACTACTGAAAAGCacattgctttatttttaatctgttatcatgctggaatttCATCGGACACAGTCCTAGTTCTTGTTGGTAGGAAGTACATTTAAGGTAACTGGCTGCTAATGAATCAGCTCTTTTGCCACTTTACTGGTGACTATCtggtttttgtttgtaaatggCACATTCAAAGTctactggacaaaaaaaaaaaaagttgaatccTCCAACAGCAATATCAAACTGTACAATGTCAGTAGGTTGCATGCCTGAATGAATCTAACCCATTTGTCAGGTGCTGAGGTCACCTTTTGTTGTTCATGTCAAGGCAAAACACAATGCTGACATATGGCATGGGGTCAAATCTGTGctggattatttaaaaaaaaaaaaaaaattggtggcGTCCTTATCTGACACAA
>XM_026921186.2
CCCTGCTCGTCATAACAAAACTATTTCTCCAGTTGTCACAGTGCAAAGCTTCCTAACGTCAGGTATTCGgttcacTATGATTCTTCCTCAATCCCTGCTCTTTTTAGTCTACCTCTCTGGACCGCTGGCCTGCCATGCATTCAAGATTTGTGCCTTCAACGTTCAGAGTTTTGGAGGCTCGAAAGCAACAGATGGCACAGTTTTGCACATCCTAATACGGATTGTGTCACGCTGTGATGTGTGTTTGCTTCAAGAAGTCAGAGATCAGAAGAAAACAGCCATACCACGTCTGATTAATAGACTCAATAAttatgaAAGGGATCACCAGTATGACTATGTGTCCAGTGGACGTCTTGGCAGGACACAAACCTATCAAGAGCAATATGTTTTTGTATTCAGGATTGACTCAGTCAGGCTAATAGACCAGTATCAGTACCCAGACACACAGAAAGGAGATGAGGATGCTTTTGCCAGGGAGCCTTTTGTAGTGCGCTTCCGAGCACCTAAAACAGTGATTGGCGAGTTTGTTCTGatcccaatgcacacctctcCTTCTAATGCCACCAAAGAGATTGATGAACTCTATGATGTCTTTGAGGATGTTAGACAGAGGTGGAAGACAGAGGACATAATGTTCCTTGGTGACTTCAATGCAGCTTGTGGATATGTCGCcaagaaaaacaggaagaacaTAAGACTCTACTCCAACATTTTCAGCTGGCTGATAGATGACAAACAGGACACTACAGTAAGAGGGACCACTGACTGTGCATATGACAGGATAGTGGTACACGGAGATTCCTTTCTCAGAGCTATAGTGCCATTCTCAGCACAACCATTTAATTTTGCCAGTGAATACCGGATCAAGGAGGAAGAGGCTTTACGTGTGAGTGACCACTATCCTGTAGAGGTAGACCTGAAGACCAAGTCAGGAAGTGAGCAGGGAAGCATGATCTTTTTCCAAATAACTCTTGGCCTTCCCTTGCTACTCCAACTGACATGACACCAGTGTGAAAGCGGAGACtttttcagtcagtcagtttgaGAGAAGATAACGATATGCACTGATGCTACTTAAACATCATCTAAGCCAAAGCTGCATAAGAATGTACTGGGTTTCTTGGAAATAATGTGATACACATTTTCATGCTCTTTAAATCAAGGAGATTGTAAGTATTAAAAAAGTTTATCAACTACTGAAAAGCacattgctttatttttaatctgttatcatgctggaatttCATCGGACACAGTCCTAGTTCTTGTTGGTAGGAAGTACATTTAAGGTAACTGGCTGCTAATGAATCAGCTCTTTTGCCACTTTACTGGTGACTATCtggtttttgtttgtaaatggCACATTCAAAGTctactggacaaaaaaaaaaaaagttgaatccTCCAACAGCAATATCAAACTGTACAATGTCAGTAGGTTGCATGCCTGAATGAATCTAACCCATTTGTCAGGTGCTGAGGTCACCTTTTGTTGTTCATGTCAAGGCAAAACACAATGCTGACATATGGCATGGGGTCAAATCTGTGctggattatttaaaaaaaaaaaaaaaattggtggcGTCCTTATCTGACACAA

Function

NR:

description
deoxyribonuclease-1-like

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921185.2 True 1651 mRNA 0.42 9 10999100 11003766
XM_026921186.2 False 1600 mRNA 0.42 9 10999100 11004596

Neighbor

gene id symbol gene type direction distance location
flna flna,LOC101154674,LOC108436314,LOC107712729 coding downstream 25325 10942875 ~ 10973775 (-)
emd LOC108275784 coding downstream 57848 10932106 ~ 10941252 (-)
cfap126 LOC108276287,LOC108276289 coding downstream 142138 10853017 ~ 10856962 (-)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding downstream 200502 10795807 ~ 10798598 (-)
LOC113530767 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108275548,LOC108434838,LOC107737591,LOC107568845,LOC108233014,LOC103151310 coding downstream 368839 10625640 ~ 10630261 (-)
kctd6b kctd6b,kctd6,LOC108436290,LOC107671957,LOC107737715,LOC107570288,LOC103028649 coding upstream 12220 11016816 ~ 11019715 (-)
slmapb LOC108276397,LOC108436320 coding upstream 25471 11030067 ~ 11039455 (-)
atp6ap1lb atp6ap1lb,LOC108275547,LOC103031199,LOC108436292,LOC105890636,LOC107672058,LOC107737620,LOC107560932 coding upstream 38667 11043263 ~ 11049735 (-)
LOC113530590 LOC108275622 coding upstream 109683 11114279 ~ 11115673 (-)
apobec2b apobec2,apobec2b,LOC108276433,LOC107657013,LOC107712740,LOC107737624 coding upstream 233656 11238252 ~ 11242304 (-)
G252967 NA non-coding downstream 1664 10994816 ~ 10997436 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding downstream 86635 10904886 ~ 10912465 (-)
G252921 NA non-coding downstream 132404 10866236 ~ 10866696 (-)
G252920 NA non-coding downstream 133400 10865360 ~ 10865700 (-)
G252859 lrrc23 non-coding downstream 216512 10782135 ~ 10782588 (-)
G252969 NA non-coding upstream 1356 11005952 ~ 11006617 (-)
LOC113530895 NA non-coding upstream 33226 11037822 ~ 11038968 (-)
LOC113530615 fam208a non-coding upstream 84469 11089065 ~ 11091335 (-)
G253174 NA non-coding upstream 260313 11264909 ~ 11265149 (-)
G253383 NA non-coding upstream 348906 11353502 ~ 11354217 (-)
sinup NA other downstream 360382 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 529304 10460694 ~ 10469796 (-)
G252373 NA other downstream 969107 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 1227537 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 2420500 8566656 ~ 8578600 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 4867 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 15935 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 451424 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 544798 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 834200 11838796 ~ 11859346 (-)

Expression


Co-expression Network