birc7 (LOC108275549)


Basic Information

Item Value
gene id birc7
gene name LOC108275549
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15339996 ~ 15357857 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921243.2
GATCCACcaaacatataaacatgatttaaacatgtttaatccCATATTCACTGTACACATTGGAGCTACttataaacacatgcacactgaaCGGTATTTCCACGTCAGTAAGTAGTGCTCCCTCACCGCCTAAATAACTGTTTTCCCCCAGCATGTCTTTTATTCAGCATAATCAGGGGTCTGGGTTCTTATGATAAAATGGCAAGAGAAATTTGCGCATCCCAAAAAGCCCACAGCACACTGCACATcatctgaaacaaacaaaaacgaAAGTTAGCTGTGTTCACAGAGGTTACAATAGGGTGTTTACCAGGGAGCGTGTACCATTGTGTGTGCTTTTCATATCCTCTCCACGCGGGAAGCGCTTTCTGACAGCCTTTCTAGAAAGCTAACCTGTAACACAGGCACTGGGGCTTTCGGGCCATATCTGGATTCCTCCTCCATGGGACGCAAGCTATATGCCTCATACAGGAGAATGTAATGGCGATGGAAACAGGATGGACCGCGAGGAGGAACCACTGAGCACTTTCCCCGACTGGCCGCTAAACGCTTCAGATAGATGTGCTGAGCTAGCGCCTCTGGGACCAGGAGATATGGTGCGCTGCTGTCGCTGCGACAGGACGCCGAGGCACTGCGCACACGAGGACCGTGCGACTGGCGCGCACCGGCGCCACTTTCCTGCGCGCGCGCTCGTTTCGAGGAGGGACACGAGCTTTGTTCCGCGCGTCCCCGCTTCGACGGATTCAGTGGACGGCCAGCTGTTGAGCCAGCTGCAGCGCCTGGCCGCGGGCGAGCAGGTGACAACGGGTCAAGCCGCTTATCCAGAGATGGAGCCTGAGGACACGCGTCTCACCACGTTCAGCACCTGGCCCACAAGCTCCTCCATCCAACCGGAAACACTGGCGCGCGCTGGCTTCTTCTACACAGGTCATAGTGATAACGTGAAGTGTTTCTTCTGTGACGGCAGTTTGAGGAACTGGGAGCCTGGAGATGATCCGTGGCAGGAACATGCCAAGTGGTTCCCACGATGTGAGTATTTGATCCAGTCAAGAGGACATCAGTACATCAACAGTGTGCAGCAGTCACACTTCAACACAACAGAGCAGGCAAGTGAATTCCAGAATTCGACTGCAAGAAATATTACCACTGGACATGATGTGCTGAGTGGGCAGAGTGCACCAGCAGAGACCATGTTCTCTCCGGTGGTGCAGGCGGTGCTGCAGATGGGTTTTGACCAAGCAGCAGTTGAGAGCCTAGTTCAGTCTCGCTTCCTGCTCACCGGCCACCATTACACTTCTGTCTCTGACCTGGTGGCTGACATCCTGCAGGCTGAAGAGGAGGGGAGGCAGGGCAGTGATAATAACACAGAGCCTGTGGTGAGGCAGAGCAGCAGTGCCAATGGAATGAAACTGAAGACCTCACTTGGGGAGAAAGTTTTGGTGACCCTGAGTGCTGAGGAACAGTTGAAGCAGCTTCAGGAGGAAAGAACCTGCAAAGTATGTATGGATAAACCGGTGTCCATGGTGTTTATTCCCTGCGGTCACCtggttgtgtgttctgagtgtGCGGCCAGCCTGAGACACTGCCCCATCTGTAGAGGAGTGATACGTGGCAGCGTACGTGCCTTCATGTCCTGAGGACTactacacacacctgcacaactGAAAGAAAAAGCTCCTCTAAAAAAACTAGTTATCTTTGAAGTAGTTAAAAGTATTTAAAGCTACCATTTACACCACAGGCTCCTGCTCCCAATACATTAGATTCAACTGGTCAGATAATTACAAGCCCTTTCTGAAGTGGGTGCGTTATACCAAGGAAAACAGATTTGGGAACCTGTGATGTAGATAACAAAATGTTGACACTTTGAAATTA

Function

NR:

description
PREDICTED: baculoviral IAP repeat-containing protein 7 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921243.2 True 1875 mRNA 0.51 7 15339996 15357857

Neighbor

gene id symbol gene type direction distance location
si:rp71-79p20.2 LOC108275774 coding downstream 82245 15187398 ~ 15257751 (-)
gss gss,LOC107594436 coding downstream 199017 15125347 ~ 15140979 (-)
acss2 acss2,LOC108438110,LOC107666475 coding downstream 223370 15093797 ~ 15116626 (-)
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding downstream 337319 14981346 ~ 15002677 (-)
adrm1 adrm1,LOC106534082,LOC103354471,LOC105894265,LOC107727009,LOC108276396 coding downstream 360708 14973016 ~ 14979288 (-)
lmod3 lmod3 coding upstream 54313 15412170 ~ 15451350 (-)
zbtb46 zbtb46,zbtb24,LOC106676336 coding upstream 97661 15455518 ~ 15561114 (-)
LOC113530990 NA coding upstream 129900 15487757 ~ 15487859 (-)
uckl1b uckl1,uckl1b,LOC107697006,LOC107723126,LOC108411658,LOC107705741,LOC107673346,LOC103372048 coding upstream 250428 15608285 ~ 15652605 (-)
sars1 sars,LOC107697960,LOC107671868 coding upstream 1216169 16574026 ~ 16587748 (-)
G255435 NA non-coding downstream 7545 15332126 ~ 15332451 (-)
G255385 NA non-coding downstream 112036 15182157 ~ 15227960 (-)
G255403 NA non-coding downstream 159356 15180386 ~ 15180640 (-)
G255306 NA non-coding downstream 461490 14875644 ~ 14878506 (-)
G255020 NA non-coding downstream 807408 14530825 ~ 14532588 (-)
G255506 NA non-coding upstream 96276 15454133 ~ 15454354 (-)
G255693 NA non-coding upstream 294990 15652847 ~ 15657703 (-)
G255772 NA non-coding upstream 485734 15843591 ~ 15849718 (-)
G255781 NA non-coding upstream 523434 15881291 ~ 15881909 (-)
LOC113530984 NA non-coding upstream 526018 15883875 ~ 15890989 (-)
LOC113530775 NA other downstream 22631 15258485 ~ 15317365 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 635726 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 1189415 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 2056111 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 2405688 12897474 ~ 12934308 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 300479 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 1289966 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 1429944 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 1495071 16852928 ~ 16871164 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 2526386 17884243 ~ 17913277 (-)

Expression


Co-expression Network