emd (LOC108275784)


Basic Information

Item Value
gene id emd
gene name LOC108275784
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10932106 ~ 10941252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921244.2
ggaaGCTTGATTTCAGGGAAGCTCACATTTCCAGTCTCACTCAAATTTACACTCCCATTTCATCCCATAACGTATGAGGGAGCCGCCCAactcagctcagctcagctcagcgTGTCTTGCTAGGAAAGTTAGCACATCCAACTGAAACGCGCCCACAGAGCACTTAAggtagcaagctagctaacaattACTAGCTTTGCTAACAACAACCAGCTGCGGACAGGGATTTTCCCACCACAAGTACAGTTACAGTCATGTCCTCATTAAGCTCCAAGTCTTCTGACGAGCTCTGTAAACTTTTGGATGAATATGGGATTAACCATGGACCCATTGTTGACTCTACCAGGAAGCTTTATGAGAAGAAGCTGGCAGAGGCCATGGCCAAAAACACCAAGTCGTCTTCTGACAAGACATTCTACAGAGAAGAACaGGAAGAGATCACATATGTTACATATCATCCACCATTGCAGGTGCGACATGAAAACTTTGGAGATGGAATAAGAAGAACAAGGACCACTGAGAACGCTGGTGACGTGGAGGATGAGCCTATCGTCAGCTACACTCGAACATCCTACCAGAGTGCACCCCGATCTAGATCAACAGCCTACACGAGCAAGTCAAGCCTGCAGGATGATAATCCAGGAACAGTCAAATCTGAGGGGAGCAAATCTGGTGGTGTGCCAGGATGGCTTCGTGTGTTGGTTTTCATCATCATTGCAGTGTTTCTTTATTATGTGTATTCAAACATGGAGTCCGCAGACGAAAACCCTTTTAAAAAGATTGAATCATAAGTAGATAACCATTTATTCCATACAAATGAAGATATaccaaaaatgctaatttttcCCCTTGAGGTGATCTATTCCAGTGTTCATTACAACATTATAAGCACAAATAGCTGGTTTTGATTTGATTAGgaactttatatatttacagattttatattaGATGTACTAGGCTCATGAACATAGTTTTACATTAACATGGTTAAcgtgtgttgtgcattttctttctttttttttggctttttaatTCACATGTATTCAAAATGATATGGCTGTTGTTCATCAGACTATTAATAGccataattttatattaaaaaagagCCTTGTTGAATGTAAGAAAATAAGTAACAGgccattataaaataaaattgtgtccAAAACA

Function

NR:

description
PREDICTED: emerin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921244.2 True 1167 mRNA 0.40 8 10932106 10941252

Neighbor

gene id symbol gene type direction distance location
cfap126 LOC108276287,LOC108276289 coding downstream 75144 10853017 ~ 10856962 (-)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding downstream 133508 10795807 ~ 10798598 (-)
LOC113530767 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108275548,LOC108434838,LOC107737591,LOC107568845,LOC108233014,LOC103151310 coding downstream 301845 10625640 ~ 10630261 (-)
tnnc2 LOC108434847,LOC108276484,LOC103044421 coding downstream 308313 10620673 ~ 10623793 (-)
LOC113530527 col20a1,slc35c2,LOC108275935,LOC107699598,LOC107593422,LOC107565826,LOC107712705,LOC107699599,LOC107737589 coding downstream 312441 10570109 ~ 10619665 (-)
flna flna,LOC101154674,LOC108436314,LOC107712729 coding upstream 1623 10942875 ~ 10973775 (-)
dnase1l1 LOC108275786 coding upstream 57848 10999100 ~ 11004596 (-)
kctd6b kctd6b,kctd6,LOC108436290,LOC107671957,LOC107737715,LOC107570288,LOC103028649 coding upstream 75564 11016816 ~ 11019715 (-)
slmapb LOC108276397,LOC108436320 coding upstream 88815 11030067 ~ 11039455 (-)
atp6ap1lb atp6ap1lb,LOC108275547,LOC103031199,LOC108436292,LOC105890636,LOC107672058,LOC107737620,LOC107560932 coding upstream 102011 11043263 ~ 11049735 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding downstream 19641 10904886 ~ 10912465 (-)
G252921 NA non-coding downstream 65410 10866236 ~ 10866696 (-)
G252920 NA non-coding downstream 66406 10865360 ~ 10865700 (-)
G252859 lrrc23 non-coding downstream 149518 10782135 ~ 10782588 (-)
G252856 NA non-coding downstream 152506 10778985 ~ 10779600 (-)
G252967 NA non-coding upstream 53564 10994816 ~ 10997436 (-)
G252969 NA non-coding upstream 64700 11005952 ~ 11006617 (-)
LOC113530895 NA non-coding upstream 96570 11037822 ~ 11038968 (-)
LOC113530615 fam208a non-coding upstream 147813 11089065 ~ 11091335 (-)
G253174 NA non-coding upstream 323657 11264909 ~ 11265149 (-)
sinup NA other downstream 293388 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 462310 10460694 ~ 10469796 (-)
G252373 NA other downstream 902113 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 1160543 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 2353506 8566656 ~ 8578600 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 68211 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 79279 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 514768 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 608142 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 897544 11838796 ~ 11859346 (-)

Expression


Co-expression Network