fbxo30b (LOC108276409,LOC108439483,LOC107735267)


Basic Information

Item Value
gene id fbxo30b
gene name LOC108276409,LOC108439483,LOC107735267
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22570446 ~ 22579027 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921251.2
CACAGCCCACAGCGactgaactattttttttttttggagaagaTTGAAGGATAGGGCACAGGacgagtgatgatgatgatggttttgGTTAAAAAACAAAGTTTTTCGTTTTACAGTGTCTGATTTGTAGTGAACATATTTCGAGGAACAGTGCGGAACAGCCGGGCTAGCTGACACTTCTGGACATTTTATACCTGAGGCTTGGGCTTCAGCCAACATCCCTGCCTTGGCCTTCTTGAAAATGGAAGAGCTCCACACTCACTGTGTGTCATGTGTGAGCCGGCGGTGCATGGTCAAGCCTGAGCCTGGCACTTCCTGTGACCTTCTTGTCTGCCCGCTGGTTTGCGGCGCTGTTTTTCACAGCTGTAAGGTAGACGAACATCGTTTGCTGTGCCCACTTGAGAGGGTACCATGCCTCAACCACAGCATCGGCTGCCCTTTTATGCTGGCCCGAGGCAAGATGGCGGAGCATCTTGAGGTGTGTCCGGCTGGCGTGGTATGTTGCACCATGGAGTGGAACCGGTGGCCGGTGAATGACGAGGACTACCGCTCCTACGAGAGGTTGAGTCGGGATGCAGATGAGGAAGAACAGCTAGACATGGCTCTTGCCTTGCAGGACCAGCGCACAATGCTGGCCTCACTAAAACTTGTATCTCTCGCACCCACAAATTGTCCTGACAGAAAACCGCAGCTTGCAGAGACACGTGAAAAGCCTAGTGTAATTGCAGATGTTATGGTTCCCACCATGACACTTGAGGAAGACATGGATGGGGCATCAGTGTTGTGTTGCTCAAAAGACATAATCAGCAATGGGATTAACGGATTGAATGAGGAGCATTATGGTGAGCTTTACCAAACCACGGTAGAGACGACCAAAAGTCTGTCTGCTGCTCTGAATGTTCTGATACACCTCAATGCCTCGGACACGCAGTGTCAAACAACGAGTGTTTCAGCAGCGCAACCAGACTTAAATGGAGAGTTACATGAAGTGTTACTTATGAAAGAAGACACCGGGTCCTACTGTGATAAAATAGCCAGTGGGGTTAGTGGTTTAAATGAGGAGTTGCAGCCTCAACGACACCAAACCTTGATGGAATTGGGGAGAAACTTGGCCTCTGCTCTTGGTGCGCTTGGAGATGCTGTCAAAGGCTCTGAGCCAAGCTGTATATTCAGCAAGACCAATAGTGCAATCGATCAGCCAGATACTGTTgagtgtgcagacattgaaaTGAAGGATAGTACCTCTGAAAATGAGGTTGAGTTTGGGGCAGTTGGTGGAATTGATGATGAGGATTCAGACAAACTTCCTGGCCACATTAGTCAAGAACATTGTCAAGAATCTTCACTCAGACTAGGAGATGAGGATGAGAAAAGTTTGTGTAACAATTGTCACAATGCTGTATCATCTAGAAAATCACAGGACCATTCTATGGAACCAGCTGAAATAGATGAGTGTTCAGAGCATGGTGATTCTTGGGAGTTTGTTGGTCCATTAATTCCGCACAGACCAGAATTGAGACATGATCTAGCCACTGTTGTAATGCAGGAGGCATCTGGATCCCAGGCTCCACTCTTACAGCCGCCTGTGCATGCCCAGGCTCTGGTTGTTCCCAGGGACAGTCTGCTGCCTTCCATAGCATTAGACTTTGAGGATAAGGCTTTTGAGAGAAAACTCCAAAACCTTCAGTTGCTCCGCAATTTTATGCCTCTTGCACTTAATGGACGGAAGGGTTGCTTTACTGAGAGCttcccacacagacagcatcGTTGTAAAATGGAGGACAAAGCTGTGGACACGTCCGATCTGGAGCAGGAGCCTCAGGATGACCCCTTGGGCCTTGGTGAGATCGACTTCACAGCTGCAGCGCTGCTGTTTTGCCTAGAGGAGTCACCACGAGCCCGCAGAATCTCTGACACCCTCTATGCCTTTGGTGGCTCACGTGTCGATTTTGGAACTCAGACCTTCAGTTTCCCTGCTGCCATCTTGGCGACCAGCACTATGGTTGGCGAGGTGGCGTCTGCTTCGGCTTGTGACCGAGCCGCGCCTCGTCTCTCACAGCCAAGTCCCTTTTGTACTTTACGATTAGATTTGACTCTGGAACAGCTGGTGCCACGACCCAGCTGGGCCCCACGTGAAGGCTCCATGTTCACATTCGAATGTGGCCAACTGTTCCGCCGAGAAGAGTTCCTCTCACACTTCCGCAACGTCCACGGAGACATCCATTCAGGGCTGAACGGCTGGATGGAGCACCGCTGTCCACTCGCCTATTATGGCTGCACCTATTCCCAACGCAGGTTCTGCCCATCCAGACAGGGATCAAAGGTTGTCCATGACCGACACCTCAggtcatttgggattcagcccaTGATGGACATAGTAACAGAGCCTGGGTGTGATCGGCTGAGCGCATTGCCCTTTGAGATCCTGCAGCATGTAGCACGGTTCCTGGATGGCTTCAGCCTGTGCCAGCTGTCTATGGTGTCACGTACCATGAGGGATGTGTGCGCTAGTCTGCTGCAGACACGGGGCATGGTGGTGGTACAGTGGGAAAAGAGGCAGTATCCTGATGGGAGTCGATCCTGGCAGATAAAAGACAAGGTGTGGCGATTCAGTACAGCCTTCAGTCCCGTGACCAGGTGGGAGTTTGCAGACATTTCCAGCATGGCAGACCACCTGAAACGCTGTCCATATAACGAGGTCCATAGACAGGTGGAGGCCGTGCCGCTGCCGTGCATGTGCACGACCAGGGAGCTTACCCGAGGCGGGCGATCACTCCGTTCCGTCCTCAAGCCAGTATTataacaacgacaacaacaacaacaacaacaacaaaaacactttaACACCAGAGCGAAAGAGCTACAACACTACATTACCTAACCTCTTTAATCAATAATATTCATCGCTGTGTACATaagacaaattattttttgagttaagattatttttatatatagtatataaatctAACAACTGCTTCGATTATGATCAGTTTTAATGACACATGCACTGAGAAAGATTTTCAGTGTTTGCCTTGTTTCTCACAGAAATGTGTGGTAACGTCTAGAGCTGTTCTCCCCAAGAGGTAAcactaaaatgacaaaaataactcAGTTGAGTGGAGTCAAATGAAGAGCCTTAAGCTGTGGATTCGATTTGTAGAATTTGACGCAGTGGATTTACTTGTAGATTTCCTCATGCTCACTTCCATCAAGTGGTGTGTTACATTATGTCCGTGTACTCCGGTTGGTATGACTGGACAAGACCCTTACAGGAGGAGACATCTTTCCAGAACAAGCACCAGTGGAGCCAACGATGAAAGAGAGATGGCTGTGATTTAAGTGGTGATACCTTGCCACTACCGACTGTTATTCATTGCTAGTAATCTACTGCACAGATTCCCAAACCCTGTTCCTGGAGTTTCCTCTGTCCTACTCAGGAAGGAGCCCCTCTCCTTCTCAACCCCCAACTCAGGAAGGGTTCTTAATTaactgattagttgaatcagatgtattagagcagggaaaacacgaAAACATGCAGGGCAGAGGATACTCCAGGAACCTGTGATCTTGTGCTGGTtttgaatacattttcattttcagttttagaTGACCAACAGCTGATCCTAAACTAGCACCCATACTCTGTGATTCTGCATAATAAAAAAGGTATTGATGAGTAAAGGTGTTGACTTAGGATCAGAGTTTGGCAATTACATGCAATCTGGATGTCATTCTACACAAATAGGTTTGATATTTCCATCagaatacactttttttttttcattttctcacagtATGAGCTGTCAAAGCATGTTGGCCATATAATCATTTTTTCCTCTGCACTTTACTGAACTCTGTCACACTTGGAACCTTGTTCAACCCAGAGACTGGCATCAGTGTCATCATCTATCACTATTATTTTAGGAGAAAATGAGGGTTCCACTTTTAAAAGACACTCCACAAGCACttaatacatttctgaaaacaTAATGTAGCACCTTCCTAAATATTGTAAACACtcataatttaaatgtttacatgcaaaatgtgttatatCTCCATGTCCAAGTTCACAAGTGCATGTTGAATGAAAACGTTTGTGGATTGTCGCATTCATTTCCGAAAGCTTTACAATATGTGCAGTTAATCTGGTAGGTAATAATAAGTTGGTCTGCTTTCAACTACTGCAGCAATTTTCAGGCCTAATCCATCCACGCtcactttgtttttgtgtctttcatctttctgttctatttcttaagCACATCCAGAGCTGAATTTGATTGATGATTGGGATTGAGCAGCACTGAATTAGCTCATAATCCAAAGCCaagtttttgtgtttatgtctGTGTAATCCCAATGAAGGCCttatggagtgtttttttttgttttgttttgtttgtttgtttgtttttttggcaactcttgctgctgctgctgctgctgctgctgaagaagaaggaaagtGTTTGCCTGAGAAAGCGTGCTGGCACCAATGATATGGAAATTAAGCCAGGACATTATATAGTCTGGACCTGCATGTGGTTTTGGTTGTGTtgaataaaaagatattttatcATCTTTGA

Function

NR:

description
PREDICTED: F-box only protein 30-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921251.2 True 4595 mRNA 0.46 3 22570446 22579027

Neighbor

gene id symbol gene type direction distance location
epm2a epm2a,LOC107718005,LOC102798438 coding downstream 591 22550556 ~ 22569855 (-)
LOC113530701 LOC108276272 coding downstream 265063 22284221 ~ 22305383 (-)
LOC113530687 LOC108275733 coding downstream 556217 21999441 ~ 22014229 (-)
LOC113530694 c1qtnf7,LOC107670563,LOC108240206 coding downstream 569504 21995034 ~ 22000942 (-)
cc2d2a cc2d2a coding downstream 577606 21968614 ~ 21992840 (-)
LOC113530559 fndc7 coding upstream 1125 22580152 ~ 22621931 (-)
LOC113530805 LOC108275557 coding upstream 52262 22631289 ~ 22642289 (-)
LOC113530789 LOC108275917,LOC108439484 coding upstream 154925 22733952 ~ 22741554 (-)
pdyn pdyn coding upstream 179424 22758451 ~ 22762020 (-)
LOC113530929 NA coding upstream 222897 22801924 ~ 22810621 (-)
LOC117599239 NA non-coding downstream 100693 22467663 ~ 22469753 (-)
G259337 NA non-coding downstream 146204 22422592 ~ 22424242 (-)
G259294 NA non-coding downstream 199357 22341861 ~ 22371089 (-)
G258966 NA non-coding downstream 763686 21805096 ~ 21806760 (-)
G258961 NA non-coding downstream 771202 21798836 ~ 21799244 (-)
G259692 NA non-coding upstream 74311 22653338 ~ 22656929 (-)
G259724 NA non-coding upstream 163717 22742744 ~ 22787979 (-)
G259811 LOC100697131,LOC105901900 non-coding upstream 427333 23006360 ~ 23010550 (-)
G259809 NA non-coding upstream 431822 23010849 ~ 23012362 (-)
G259812 NA non-coding upstream 438279 23017306 ~ 23018360 (-)
G259306 LOC108275814,LOC108411446 other downstream 121019 22446030 ~ 22449427 (-)
cpeb2 cpeb2,LOC108276376 other downstream 522058 22016047 ~ 22048388 (-)
fyco1a LOC108275732 other downstream 615784 21925244 ~ 21954662 (-)
trnaq-uug_7 NA other downstream 1215749 21354439 ~ 21354697 (-)
G258580 map7 other downstream 1400748 21168986 ~ 21169698 (-)
si:ch73-217n20.1 NA other upstream 382551 22961578 ~ 22980986 (-)
LOC113530288 vstm2l other upstream 613230 23192257 ~ 23240347 (-)
e2f1 e2f1 other upstream 729872 23308899 ~ 23317464 (-)
G260310 NA other upstream 1184647 23763674 ~ 23764163 (-)
LOC113530810 LOC108275656 other upstream 1394338 23973365 ~ 23979695 (-)

Expression


Co-expression Network