slmapb (LOC108276397,LOC108436320)


Basic Information

Item Value
gene id slmapb
gene name LOC108276397,LOC108436320
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11030067 ~ 11039455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921268.2
CTGCCCCCTTCCTCCTCAGAAATGGAATCGTCTAACGGCTCCATCAGAAAAGCAAATGTGTGGAAGAGTGTAAAAGCCAGCAGTGCCTCTGCTTCACCTTCACGACGCCTACCGGCAGCGGAACACCAGTCCTGTGATAAGGAGGAATAAATGGAGAGTCAGCAACTGAAGGATCCACTGAATAAAGTTTCACTAATCAAAGATGAGCTGACTCGGAGCTCCATGGAGGCCAGTGAGTCAGAGAAGGTGATTCAGCACCTTAATCAGGAGCTGAAGGAGGCCCATGATCAGGCCAATGCTGGCAAGCAGAAGTGTGTGGAGCTGCAAGGCCTTCTAGAGGAGGAGAAGCGGGCCAGCAAGCATCAGACAGAGGAGTCTGCAAAGCAGATGAAGATTCTTCAGACTCAGCTTCAGAAGTTGCAGGATGAAATGGAAAATCTCAGGGAACAGAAGGACAGTACTATTTTAAGTATGCGACAGGAAGCACACGCATCTCAAGAGGAAATGCAGGTATTGCGCCGAAGCATGGAGAAGGCTGCAGCCGAGCGCGAGCACGAGGTCAGCGCTCTAAAGGGCAACCTGGCAACACTAACTACTGAGCTGGAGAAATGGCAGTTGACTGCAAATAAGTACGAGCGTGAGATTGACAGCCTGCAGGCAAATCACCAGCAACAGAACCAGCAGAGAGACAAAGTTGCTAAACAGCAAGCCAGTGAGCTGGAGAAGCTGAAGCAGGACTATGAGAGCCtgcagagggagtgtgtgtctctcaggtCAGAGCGGGAGCAGTTGGCTGCACAGCAGCAGAAGGAGAACAGCAGTCTGCAGAGTGAATGCTCGTCACTGCGCTCTGAGAAAGATCAGCTTCTAAGGAAACTGCAGCAACTGGAAAAAGAGCTAGACAGCTGTAAGAAGCAGAGTGAAAGTCTGAGCAGCACGGCAGAGGCTCTGGAGAAGACAAGGGCTGACCTAGAGAAATGTCTGAGTGCTGCGCAGGAGGAGCATCAGAAAAACTGCAGCCAGCTTCAAAGCCAGCTGGAGCAGAGCAAAACGAGGACCAAAGAGCTGCAGAAGGAGTACGAAGAGACGCAAGCAGAGCTGTCAGGCCTGAAAGAGAGGTGTGAGCAGGTAGAGCAGAACAAGGAGTCTCTCAGCCTGGAACTGCAGCAGTGCCAAGCTAGCCTGAAGTCTCTGCAGGAGAAAAGCAGCCAACTGTCTTTATTGCCGCCCATCCTAGCCGTAGTCATCGGCCTTGTCCTGGCTTTGCTGTATTGGTGCTTCGGCCCATTGTGGTAGAAAGGAAAGATGGATCAGGTGGATGCCTGTCGCCGCTGTAACAGTTGCTGTCACAGCCTACGTGCTCACAAAGACTTCAACCTGAGTATCTGGCACTATGAAGCACTAAAAAAACCACACGCGCACATTTCCGACCTTACAGACATATTGCCCTTTTAGTATAAGAGGGCTTTATGTGAGAACTAGTGCAGCTTGTAACTATAATATTGAATGCTGAAGGCCTTAGTTTAATTATATAGGGTATTAGATCCATATCAGATCCAAGCTCCAAGCAGCTGCAGTGTTTCTGTAAAGGCGAAGACTTTTAGACTTTAATGTGTCTAAATGTTAGTTTTCTTCCTGCAAAATGTAGTTATTTTGCCAAACATTTGTATTATACGCATTTGCCTTACTGAATTAATGATGAGGTTAGCCCATTTCCTGATTGCACTGCTATATTTCGTctgctataaaaaaaagtcagctttaaataattattttaataattcactATAGTGAAAGCAATAATACATTTGAAACATGTACTCACATTTGAAGTCTTGCACACTATGAAAATGGTTCTGTTCTGCTAGTTTTGCTCTTCTTGTACTGATTTAATCGTGTTCGTCTTATTTATCTAGTTGCCAGTTCTGATCTTAATTTAAAGTTACAAAAACAAAGTTTATGCCCTGTTTGTCAATGTTCTATAGCTTTTTAAGTATTAAGGTATTAACAATCAGAATACTACACTTAAAGTTAAGAGCACTAATTTGTCTCAAAGAGACACTTAAAGCAATTAATTTGTTACTTGTACAGATGTTTGCTGAAGGACAGAGATTTAAAAGTGTGCTTGTTGCAacaattaaacagaaatattaatggaaataaagaagaaagtgtgtgttaa
>XM_026921269.2
CTGCCCCCTTCCTCCTCAGAAATGGAATCGTCTAACGGCTCCATCAGAAAAGCAAATGTGTGGAAGAGTGTAAAAGCCAGCAGTGCCTCTGCTTCACCTTCACGACGCCTACCGGCAGCGGAACACCAGTCCTGTGATAAGGAGGAATAAATGGAGAGTCAGCAACTGAAGGATCCACTGAATAAAGTTTCACTAATCAAAGATGAGCTGACTCGGAGCTCCATGGAGGCCAGTGAGTCAGAGAAGGTGATTCAGCACCTTAATCAGGAGCTGAAGGAGGCCCATGATCAGGCCAATGCTGGCAAGCAGAAGTGTGTGGAGCTGCAAGGCCTTCTAGAGGAGGAGAAGCGGGCCAGCAAGCATCAGACAGAGGAGTCTGCAAAGCAGATGAAGATTCTTCAGACTCAGCTTCAGAAGTTGCAGGATGAAATGGAAAATCTCAGGGAACAGAAGGACAGTACTATTTTAAGTATGCGACAGGAAGCACACGCATCTCAAGAGGAAATGCAGGTATTGCGCCGAAGCATGGAGAAGGCTGCAGCCGAGCGCGAGCACGAGGTCAGCGCTCTAAAGGGCAACCTGGCAACACTAACTACTGAGCTGGAGAAATGGCAGTTGACTGCAAATAAGTACGAGCGTGAGATTGACAGCCTGCAGGCAAATCACCAGCAACAGAACCAGCAGAGAGACAAAGTTGCTAAACAGCAAGCCAGTGAGCTGGAGAAGCTGAAGCAGGACTATGAGAGCCtgcagagggagtgtgtgtctctcaggtCAGAGCGGGAGCAGTTGGCTGCACAGCAGCAGAAGGAGAACAGCAGTCTGCAGAGTGAATGCTCGTCACTGCGCTCTGAGAAAGATCAGCTTCTAAGGAAACTGCAGCAACTGGAAAAAGAGCTAGACAGCTGTAAGAAGCAGAGTGAAAGTCTGAGCAGCACGGCAGAGGCTCTGGAGAAGACAAGGGCTGACCTAGAGAAATGTCTGAGTGCTGCGCAGGAGGAGCATCAGAAAAACTGCAGCCAGCTTCAAAGCCAGCTGGAGCAGAGCAAAACGAGGACCAAAGAGCTGCAGAAGGAGTACGAAGAGACGCAAGCAGAGCTGTCAGGCCTGAAAGAGAGGTGTGAGCAGGTAGAGCAGAACAAGGAGTCTCTCAGCCTGGAACTGCAGCAGTGCCAAGCTAGCCTGAAGTCTCTGCAGGAGAAAAGCAGCCAAGAAAGATGGATCAGGTGGATGCCTGTCGCCGCTGTAACAGTTGCTGTCACAGCCTACGTGCTCACAAAGACTTCAACCTGAGTATCTGGCACTATGAAGCACTAAAAAAACCACACGCGCACATTTCCGACCTTACAGACATATTGCCCTTTTAGTATAAGAGGGCTTTATGTGAGAACTAGTGCAGCTTGTAACTATAATATTGAATGCTGAAGGCCTTAGTTTAATTATATAGGGTATTAGATCCATATCAGATCCAAGCTCCAAGCAGCTGCAGTGTTTCTGTAAAGGCGAAGACTTTTAGACTTTAATGTGTCTAAATGTTAGTTTTCTTCCTGCAAAATGTAGTTATTTTGCCAAACATTTGTATTATACGCATTTGCCTTACTGAATTAATGATGAGGTTAGCCCATTTCCTGATTGCACTGCTATATTTCGTctgctataaaaaaaagtcagctttaaataattattttaataattcactATAGTGAAAGCAATAATACATTTGAAACATGTACTCACATTTGAAGTCTTGCACACTATGAAAATGGTTCTGTTCTGCTAGTTTTGCTCTTCTTGTACTGATTTAATCGTGTTCGTCTTATTTATCTAGTTGCCAGTTCTGATCTTAATTTAAAGTTACAAAAACAAAGTTTATGCCCTGTTTGTCAATGTTCTATAGCTTTTTAAGTATTAAGGTATTAACAATCAGAATACTACACTTAAAGTTAAGAGCACTAATTTGTCTCAAAGAGACACTTAAAGCAATTAATTTGTTACTTGTACAGATGTTTGCTGAAGGACAGAGATTTAAAAGTGTGCTTGTTGCAacaattaaacagaaatattaatggaaataaagaagaaagtgtgtgttaa

Function

NR:

description
sarcolemmal membrane-associated protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921268.2 True 2182 mRNA 0.45 10 11030067 11039455
XM_026921269.2 False 2094 mRNA 0.44 9 11030067 11039455

Neighbor

gene id symbol gene type direction distance location
kctd6b kctd6b,kctd6,LOC108436290,LOC107671957,LOC107737715,LOC107570288,LOC103028649 coding downstream 10352 11016816 ~ 11019715 (-)
dnase1l1 LOC108275786 coding downstream 25471 10999100 ~ 11004596 (-)
flna flna,LOC101154674,LOC108436314,LOC107712729 coding downstream 56292 10942875 ~ 10973775 (-)
emd LOC108275784 coding downstream 88815 10932106 ~ 10941252 (-)
cfap126 LOC108276287,LOC108276289 coding downstream 173105 10853017 ~ 10856962 (-)
atp6ap1lb atp6ap1lb,LOC108275547,LOC103031199,LOC108436292,LOC105890636,LOC107672058,LOC107737620,LOC107560932 coding upstream 3808 11043263 ~ 11049735 (-)
LOC113530590 LOC108275622 coding upstream 74824 11114279 ~ 11115673 (-)
apobec2b apobec2,apobec2b,LOC108276433,LOC107657013,LOC107712740,LOC107737624 coding upstream 198797 11238252 ~ 11242304 (-)
si:dkey-109j17.5 LOC108276432,LOC108436326,LOC103033727 coding upstream 208197 11247652 ~ 11254606 (-)
ccdc115 ccdc115 coding upstream 216609 11256064 ~ 11258687 (-)
G252969 NA non-coding downstream 23450 11005952 ~ 11006617 (-)
G252967 NA non-coding downstream 32631 10994816 ~ 10997436 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding downstream 117602 10904886 ~ 10912465 (-)
G252921 NA non-coding downstream 163371 10866236 ~ 10866696 (-)
G252920 NA non-coding downstream 164367 10865360 ~ 10865700 (-)
LOC113530615 fam208a non-coding upstream 49610 11089065 ~ 11091335 (-)
G253174 NA non-coding upstream 225454 11264909 ~ 11265149 (-)
G253383 NA non-coding upstream 314047 11353502 ~ 11354217 (-)
G253385 NA non-coding upstream 320060 11359515 ~ 11361585 (-)
G253384 NA non-coding upstream 323517 11362972 ~ 11364414 (-)
abhd6b LOC108275644,LOC108436291 other downstream 5058 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 14401 11009463 ~ 11015666 (-)
sinup NA other downstream 391349 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 560271 10460694 ~ 10469796 (-)
G252373 NA other downstream 1000074 10029492 ~ 10029993 (-)
LOC113530309 NA other upstream 416565 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 509939 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 799341 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 1116273 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1858019 12897474 ~ 12934308 (-)

Expression


Co-expression Network